RNA–Protein interactions for RNA: ENST00000427110.6

PTPRC-208, Transcript of protein tyrosine phosphatase, receptor type C, humanhuman

TSL 1 (best)

Gene PTPRC, Length 264 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRC-208ENST00000427110 PISDQ9UG56 409 aa1.56□□□□□ -2.16
PTPRC-208ENST00000427110 STARD10Q9Y365 291 aa1.56□□□□□ -2.16
PTPRC-208ENST00000427110 RRP15Q9Y3B9 282 aaKnown RBP1.56□□□□□ -2.16
PTPRC-208ENST00000427110 F11RQ9Y624 299 aaKnown RBP1.56□□□□□ -2.16
PTPRC-208ENST00000427110 COL24A1Q17RW2 1714 aa1.56□□□□□ -2.16
PTPRC-208ENST00000427110 WDR19Q8NEZ3 1342 aa1.56□□□□□ -2.16
PTPRC-208ENST00000427110 PCDH11XQ9BZA7 1347 aa1.56□□□□□ -2.16
PTPRC-208ENST00000427110 LAMB1P07942 1786 aa1.56□□□□□ -2.16
PTPRC-208ENST00000427110 MAST2Q6P0Q8 1798 aa1.56□□□□□ -2.16
PTPRC-208ENST00000427110 FOCADQ5VW36 1801 aa1.56□□□□□ -2.16
PTPRC-208ENST00000427110 BCL9O00512 1426 aa1.56□□□□□ -2.16
PTPRC-208ENST00000427110 ZNF609O15014 1411 aa1.56□□□□□ -2.16
PTPRC-208ENST00000427110 MYH8P13535 1937 aa1.56□□□□□ -2.16
PTPRC-208ENST00000427110 SCN7AQ01118 1682 aa1.55□□□□□ -2.16
PTPRC-208ENST00000427110 LY75O60449 1722 aa1.55□□□□□ -2.16
PTPRC-208ENST00000427110 FRMPD3Q5JV73 1810 aa1.55□□□□□ -2.16
PTPRC-208ENST00000427110 CACNA1SQ13698 1873 aa1.55□□□□□ -2.16
PTPRC-208ENST00000427110 A0A0D9SFI3 127 aa1.55□□□□□ -2.16
PTPRC-208ENST00000427110 SMCO3A2RU48 225 aa1.55□□□□□ -2.16
PTPRC-208ENST00000427110 XKRY2A2RUG3 117 aa1.55□□□□□ -2.16
PTPRC-208ENST00000427110 GOLGA8OA6NCC3 632 aa1.55□□□□□ -2.16
PTPRC-208ENST00000427110 ZNF726A6NNF4 738 aa1.55□□□□□ -2.16
PTPRC-208ENST00000427110 LRRIQ3A6PVS8 624 aaPredicted RBP1.55□□□□□ -2.16
PTPRC-208ENST00000427110 ANKRD63C9JTQ0 380 aa1.55□□□□□ -2.16
PTPRC-208ENST00000427110 GOLGA8NF8WBI6 632 aa1.55□□□□□ -2.16
PTPRC-208ENST00000427110 AIM2O14862 343 aa1.55□□□□□ -2.16
PTPRC-208ENST00000427110 EEDO75530 441 aaKnown RBP1.55□□□□□ -2.16
PTPRC-208ENST00000427110 MED6O75586 246 aa1.55□□□□□ -2.16
PTPRC-208ENST00000427110 GABARAPO95166 117 aa1.55□□□□□ -2.16
PTPRC-208ENST00000427110 CLIC3O95833 236 aa1.55□□□□□ -2.16
PTPRC-208ENST00000427110 TPM3P06753 285 aa1.55□□□□□ -2.16
PTPRC-208ENST00000427110 TPM2P07951 284 aa1.55□□□□□ -2.16
PTPRC-208ENST00000427110 ANXA5P08758 320 aa1.55□□□□□ -2.16
PTPRC-208ENST00000427110 ZDHHC11BP0C7U3 371 aa1.55□□□□□ -2.16
PTPRC-208ENST00000427110 SMIM10L1P0DMW3 83 aa1.55□□□□□ -2.16
PTPRC-208ENST00000427110 ZNF24P17028 368 aa1.55□□□□□ -2.16
PTPRC-208ENST00000427110 TFPI2P48307 235 aa1.55□□□□□ -2.16
PTPRC-208ENST00000427110 MNAT1P51948 309 aa1.55□□□□□ -2.16
PTPRC-208ENST00000427110 NCBP2P52298 156 aaKnown RBP eCLIP1.55□□□□□ -2.16
PTPRC-208ENST00000427110 ACLYP53396 1101 aa1.55□□□□□ -2.16
PTPRC-208ENST00000427110 NUTF2P61970 127 aaKnown RBP1.55□□□□□ -2.16
PTPRC-208ENST00000427110 SLC7A9P82251 487 aa1.55□□□□□ -2.16
PTPRC-208ENST00000427110 TWF1Q12792 350 aa1.55□□□□□ -2.16
PTPRC-208ENST00000427110 ZSCAN26Q16670 478 aa1.55□□□□□ -2.16
PTPRC-208ENST00000427110 HSP90AB3PQ58FF7 597 aa1.55□□□□□ -2.16
PTPRC-208ENST00000427110 HES5Q5TA89 166 aa1.55□□□□□ -2.16
PTPRC-208ENST00000427110 ANKRD26P1Q6NSI1 321 aa1.55□□□□□ -2.16
PTPRC-208ENST00000427110 ZNF493Q6ZR52 646 aa1.55□□□□□ -2.16
PTPRC-208ENST00000427110 LINC00173Q6ZV60 143 aa1.55□□□□□ -2.16
PTPRC-208ENST00000427110 NCCRP1Q6ZVX7 275 aaPredicted RBP1.55□□□□□ -2.16
PTPRC-208ENST00000427110 NIPA1Q7RTP0 329 aa1.55□□□□□ -2.16
PTPRC-208ENST00000427110 LIX1Q8N485 282 aa1.55□□□□□ -2.16
PTPRC-208ENST00000427110 MS4A15Q8N5U1 240 aa1.55□□□□□ -2.16
PTPRC-208ENST00000427110 HSD17B11Q8NBQ5 300 aa1.55□□□□□ -2.16
PTPRC-208ENST00000427110 OR56B2PQ8NGI1 322 aa1.55□□□□□ -2.16
PTPRC-208ENST00000427110 OR5B3Q8NH48 314 aa1.55□□□□□ -2.16
PTPRC-208ENST00000427110 SLC7A13Q8TCU3 470 aa1.55□□□□□ -2.16
PTPRC-208ENST00000427110 CD300LFQ8TDQ1 290 aa1.55□□□□□ -2.16
PTPRC-208ENST00000427110 STARD8Q92502 1023 aa1.55□□□□□ -2.16
PTPRC-208ENST00000427110 TMEM54Q969K7 222 aa1.55□□□□□ -2.16
PTPRC-208ENST00000427110 EXOSC8Q96B26 276 aaKnown RBP1.55□□□□□ -2.16
PTPRC-208ENST00000427110 FAM3DQ96BQ1 224 aa1.55□□□□□ -2.16
PTPRC-208ENST00000427110 RASD2Q96D21 266 aa1.55□□□□□ -2.16
PTPRC-208ENST00000427110 PIK3IP1Q96FE7 263 aa1.55□□□□□ -2.16
PTPRC-208ENST00000427110 SMIM10Q96HG1 83 aa1.55□□□□□ -2.16
PTPRC-208ENST00000427110 FOPNLQ96NB1 174 aa1.55□□□□□ -2.16
PTPRC-208ENST00000427110 TSSK3Q96PN8 268 aa1.55□□□□□ -2.16
PTPRC-208ENST00000427110 MYCBPQ99417 103 aaPredicted RBP1.55□□□□□ -2.16
PTPRC-208ENST00000427110 P2RX4Q99571 388 aa1.55□□□□□ -2.16
PTPRC-208ENST00000427110 ATP5SQ99766 215 aa1.55□□□□□ -2.16
PTPRC-208ENST00000427110 SH3GL3Q99963 347 aa1.55□□□□□ -2.16
PTPRC-208ENST00000427110 CENPKQ9BS16 269 aa1.55□□□□□ -2.16
PTPRC-208ENST00000427110 ILKAPQ9H0C8 392 aaPredicted RBP1.55□□□□□ -2.16
PTPRC-208ENST00000427110 BOLA2Q9H3K6 86 aa1.55□□□□□ -2.16
PTPRC-208ENST00000427110 ZSCAN16Q9H4T2 348 aaPredicted RBP1.55□□□□□ -2.16
PTPRC-208ENST00000427110 PATZ1Q9HBE1 687 aaKnown RBP1.55□□□□□ -2.16
PTPRC-208ENST00000427110 DDX19AQ9NUU7 478 aaKnown RBP1.55□□□□□ -2.16
PTPRC-208ENST00000427110 NMRK1Q9NWW6 199 aa1.55□□□□□ -2.16
PTPRC-208ENST00000427110 RBAKQ9NYW8 714 aaPredicted RBP1.55□□□□□ -2.16
PTPRC-208ENST00000427110 ZNF629Q9UEG4 869 aaPredicted RBP1.55□□□□□ -2.16
PTPRC-208ENST00000427110 OR12D3Q9UGF7 316 aa1.55□□□□□ -2.16
PTPRC-208ENST00000427110 CD84Q9UIB8 345 aa1.55□□□□□ -2.16
PTPRC-208ENST00000427110 LSM7Q9UK45 103 aaKnown RBP1.55□□□□□ -2.16
PTPRC-208ENST00000427110 RAB26Q9ULW5 256 aa1.55□□□□□ -2.16
PTPRC-208ENST00000427110 PSG11Q9UQ72 335 aa1.55□□□□□ -2.16
PTPRC-208ENST00000427110 CNTNAP1P78357 1384 aa1.55□□□□□ -2.16
PTPRC-208ENST00000427110 NID2Q14112 1375 aa1.55□□□□□ -2.16
PTPRC-208ENST00000427110 CARMIL3Q8ND23 1372 aa1.55□□□□□ -2.16
PTPRC-208ENST00000427110 RTL9Q8NET4 1388 aa1.55□□□□□ -2.16
PTPRC-208ENST00000427110 ATRNO75882 1429 aa1.55□□□□□ -2.16
PTPRC-208ENST00000427110 ATAD5Q96QE3 1844 aa1.54□□□□□ -2.16
PTPRC-208ENST00000427110 MYH7BA7E2Y1 1941 aa1.54□□□□□ -2.16
PTPRC-208ENST00000427110 IGKV2D-24A0A075B6R9 120 aa1.54□□□□□ -2.16
PTPRC-208ENST00000427110 ZNF816-ZNF321PA0A0X1KG74 233 aa1.54□□□□□ -2.16
PTPRC-208ENST00000427110 PLAC8L1A1L4L8 177 aa1.54□□□□□ -2.16
PTPRC-208ENST00000427110 E7EWF7 191 aa1.54□□□□□ -2.16
PTPRC-208ENST00000427110 INS-IGF2F8WCM5 200 aa1.54□□□□□ -2.16
PTPRC-208ENST00000427110 RAB29O14966 203 aa1.54□□□□□ -2.16
PTPRC-208ENST00000427110 RNF113AO15541 343 aaKnown RBP1.54□□□□□ -2.16
PTPRC-208ENST00000427110 RNF13O43567 381 aa1.54□□□□□ -2.16
Retrieved 100 of 20,778 RNA–protein pairs in 32.5 ms