RNA–Protein interactions for RNA: ENST00000405805.5

HMGB1-206, Transcript of high mobility group box 1, humanhuman

APPRIS P1 TSL 2 BASIC

Gene HMGB1, Length 4,199 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-206ENST00000405805 SLC9A3R2Q15599 337 aa10.84□□□□□ -0.67
HMGB1-206ENST00000405805 OR51A4Q8NGJ6 313 aa10.84□□□□□ -0.67
HMGB1-206ENST00000405805 OR1S2Q8NGQ3 325 aa10.84□□□□□ -0.67
HMGB1-206ENST00000405805 ZNF417Q8TAU3 575 aa10.84□□□□□ -0.67
HMGB1-206ENST00000405805 SLC37A2Q8TED4 501 aa10.84□□□□□ -0.67
HMGB1-206ENST00000405805 FAM3DQ96BQ1 224 aa10.84□□□□□ -0.67
HMGB1-206ENST00000405805 ZBTB8AQ96BR9 441 aa10.84□□□□□ -0.67
HMGB1-206ENST00000405805 LIN37Q96GY3 246 aaPredicted RBP10.84□□□□□ -0.67
HMGB1-206ENST00000405805 FAM71F1Q96KD3 344 aaPredicted RBP10.84□□□□□ -0.67
HMGB1-206ENST00000405805 HDAC8Q9BY41 377 aa10.84□□□□□ -0.67
HMGB1-206ENST00000405805 AICDAQ9GZX7 198 aa10.84□□□□□ -0.67
HMGB1-206ENST00000405805 DUSP22Q9NRW4 184 aa10.84□□□□□ -0.67
HMGB1-206ENST00000405805 OR5V1Q9UGF6 321 aa10.84□□□□□ -0.67
HMGB1-206ENST00000405805 NPIPA1Q9UND3 350 aa10.84□□□□□ -0.67
HMGB1-206ENST00000405805 EMC9Q9Y3B6 208 aa10.84□□□□□ -0.67
HMGB1-206ENST00000405805 MEIKINA0A087WXM9 373 aa10.84□□□□□ -0.67
HMGB1-206ENST00000405805 A0A0D9SG52 128 aa10.84□□□□□ -0.67
HMGB1-206ENST00000405805 NAP1L6A6NFF2 107 aa10.84□□□□□ -0.67
HMGB1-206ENST00000405805 SERINC4A6NH21 518 aa10.84□□□□□ -0.67
HMGB1-206ENST00000405805 A6NLC8 198 aa10.84□□□□□ -0.67
HMGB1-206ENST00000405805 KCNAB3O43448 404 aa10.84□□□□□ -0.67
HMGB1-206ENST00000405805 MPIG6BO95866 241 aa10.84□□□□□ -0.67
HMGB1-206ENST00000405805 IGF2P01344 180 aa10.84□□□□□ -0.67
HMGB1-206ENST00000405805 EBPQ15125 230 aaKnown RBP10.84□□□□□ -0.67
HMGB1-206ENST00000405805 OR2A2Q6IF42 318 aa10.84□□□□□ -0.67
HMGB1-206ENST00000405805 KCTD18Q6PI47 426 aaPredicted RBP10.84□□□□□ -0.67
HMGB1-206ENST00000405805 NUBPLQ8TB37 319 aa10.84□□□□□ -0.67
HMGB1-206ENST00000405805 RNF141Q8WVD5 230 aa10.84□□□□□ -0.67
HMGB1-206ENST00000405805 ZFP64Q9NPA5 681 aa10.84□□□□□ -0.67
HMGB1-206ENST00000405805 COPS7AQ9UBW8 275 aa10.84□□□□□ -0.67
HMGB1-206ENST00000405805 ZNF208O43345 1280 aa10.83□□□□□ -0.68
HMGB1-206ENST00000405805 EFEMP2O95967 443 aa10.83□□□□□ -0.68
HMGB1-206ENST00000405805 NDUFB7P17568 137 aa10.83□□□□□ -0.68
HMGB1-206ENST00000405805 PLCXD2Q0VAA5 305 aa10.83□□□□□ -0.68
HMGB1-206ENST00000405805 ETFBKMTQ8IXQ9 262 aa10.83□□□□□ -0.68
HMGB1-206ENST00000405805 AKR1E2Q96JD6 320 aa10.83□□□□□ -0.68
HMGB1-206ENST00000405805 OCSTAMPQ9BR26 566 aa10.83□□□□□ -0.68
HMGB1-206ENST00000405805 PBDC1Q9BVG4 233 aa10.83□□□□□ -0.68
HMGB1-206ENST00000405805 POFUT1Q9H488 388 aa10.83□□□□□ -0.68
HMGB1-206ENST00000405805 MEMO1Q9Y316 297 aa10.83□□□□□ -0.68
HMGB1-206ENST00000405805 CEP250Q9BV73 2442 aa10.83□□□□□ -0.68
HMGB1-206ENST00000405805 ARHGEF17Q96PE2 2063 aaPredicted RBP10.83□□□□□ -0.68
HMGB1-206ENST00000405805 ZNF587BE7ETH6 402 aa10.83□□□□□ -0.68
HMGB1-206ENST00000405805 CD14P08571 375 aa10.83□□□□□ -0.68
HMGB1-206ENST00000405805 RAB40ALP0C0E4 278 aa10.83□□□□□ -0.68
HMGB1-206ENST00000405805 IFNGR1P15260 489 aa10.83□□□□□ -0.68
HMGB1-206ENST00000405805 RBP2P50120 134 aa10.83□□□□□ -0.68
HMGB1-206ENST00000405805 SNRPNP63162 240 aaKnown RBP10.83□□□□□ -0.68
HMGB1-206ENST00000405805 CCINQ13939 588 aa10.83□□□□□ -0.68
HMGB1-206ENST00000405805 SOHLH1Q5JUK2 328 aa10.83□□□□□ -0.68
HMGB1-206ENST00000405805 COL13A1Q5TAT6 717 aaPredicted RBP10.83□□□□□ -0.68
HMGB1-206ENST00000405805 OR2T2Q6IF00 324 aa10.83□□□□□ -0.68
HMGB1-206ENST00000405805 CBLN3Q6UW01 205 aa10.83□□□□□ -0.68
HMGB1-206ENST00000405805 PXKQ7Z7A4 578 aa10.83□□□□□ -0.68
HMGB1-206ENST00000405805 PHOSPHO2Q8TCD6 241 aa10.83□□□□□ -0.68
HMGB1-206ENST00000405805 RAB40AQ8WXH6 277 aa10.83□□□□□ -0.68
HMGB1-206ENST00000405805 ZNF681Q96N22 645 aa10.83□□□□□ -0.68
HMGB1-206ENST00000405805 OR11A1Q9GZK7 315 aa10.83□□□□□ -0.68
HMGB1-206ENST00000405805 ZNF701Q9NV72 531 aaPredicted RBP10.83□□□□□ -0.68
HMGB1-206ENST00000405805 TMEM14AQ9Y6G1 99 aa10.83□□□□□ -0.68
HMGB1-206ENST00000405805 TSPAN11A1L157 253 aa10.83□□□□□ -0.68
HMGB1-206ENST00000405805 F10P00742 488 aa10.83□□□□□ -0.68
HMGB1-206ENST00000405805 HSD11B1P28845 292 aa10.83□□□□□ -0.68
HMGB1-206ENST00000405805 ADPRHP54922 357 aa10.83□□□□□ -0.68
HMGB1-206ENST00000405805 FAM185AQ8N0U4 392 aa10.83□□□□□ -0.68
HMGB1-206ENST00000405805 KCNRGQ8N5I3 272 aa10.83□□□□□ -0.68
HMGB1-206ENST00000405805 SORCS2Q96PQ0 1159 aa10.83□□□□□ -0.68
HMGB1-206ENST00000405805 MCOLN1Q9GZU1 580 aa10.83□□□□□ -0.68
HMGB1-206ENST00000405805 CHST6Q9GZX3 395 aa10.83□□□□□ -0.68
HMGB1-206ENST00000405805 OR10A5Q9H207 317 aa10.83□□□□□ -0.68
HMGB1-206ENST00000405805 FBXO7Q9Y3I1 522 aa10.83□□□□□ -0.68
HMGB1-206ENST00000405805 A0A0U1RQK1 487 aa10.82□□□□□ -0.68
HMGB1-206ENST00000405805 THBS1P07996 1170 aa10.82□□□□□ -0.68
HMGB1-206ENST00000405805 HNRNPA2B1P22626 353 aaKnown RBP10.82□□□□□ -0.68
HMGB1-206ENST00000405805 PAX6P26367 422 aa10.82□□□□□ -0.68
HMGB1-206ENST00000405805 CDKN2AP42771 156 aaKnown RBP10.82□□□□□ -0.68
HMGB1-206ENST00000405805 ZNF84P51523 738 aa10.82□□□□□ -0.68
HMGB1-206ENST00000405805 PTTG1IPP53801 180 aa10.82□□□□□ -0.68
HMGB1-206ENST00000405805 C15orf40Q8WUR7 153 aa10.82□□□□□ -0.68
HMGB1-206ENST00000405805 LRFN5Q96NI6 719 aa10.82□□□□□ -0.68
HMGB1-206ENST00000405805 EMC6Q9BV81 110 aa10.82□□□□□ -0.68
HMGB1-206ENST00000405805 EDEM2Q9BV94 578 aa10.82□□□□□ -0.68
HMGB1-206ENST00000405805 ST6GALNAC5Q9BVH7 336 aa10.82□□□□□ -0.68
HMGB1-206ENST00000405805 SELENOIQ9C0D9 397 aa10.82□□□□□ -0.68
HMGB1-206ENST00000405805 NELFAQ9H3P2 528 aa10.82□□□□□ -0.68
HMGB1-206ENST00000405805 KCNE5Q9UJ90 142 aa10.82□□□□□ -0.68
HMGB1-206ENST00000405805 ZMIZ1Q9ULJ6 1067 aa10.82□□□□□ -0.68
HMGB1-206ENST00000405805 CACNA1EQ15878 2313 aa10.82□□□□□ -0.68
HMGB1-206ENST00000405805 TEX13DA0A0J9YY54 714 aaPredicted RBP10.82□□□□□ -0.68
HMGB1-206ENST00000405805 FAM221BA6H8Z2 402 aa10.82□□□□□ -0.68
HMGB1-206ENST00000405805 OR5K4A6NMS3 321 aa10.82□□□□□ -0.68
HMGB1-206ENST00000405805 ABCD3P28288 659 aa10.82□□□□□ -0.68
HMGB1-206ENST00000405805 PEBP1P30086 187 aaKnown RBP10.82□□□□□ -0.68
HMGB1-206ENST00000405805 FAM53BQ14153 422 aa10.82□□□□□ -0.68
HMGB1-206ENST00000405805 VAMP3Q15836 100 aa10.82□□□□□ -0.68
HMGB1-206ENST00000405805 SLC36A2Q495M3 483 aa10.82□□□□□ -0.68
HMGB1-206ENST00000405805 TMEM255AQ5JRV8 349 aa10.82□□□□□ -0.68
HMGB1-206ENST00000405805 DMKNQ6E0U4 476 aaPredicted RBP10.82□□□□□ -0.68
HMGB1-206ENST00000405805 SLC18B1Q6NT16 456 aa10.82□□□□□ -0.68
HMGB1-206ENST00000405805 OR13H1Q8NG92 308 aa10.82□□□□□ -0.68
Retrieved 100 of 20,778 RNA–protein pairs in 27.5 ms