RNA–Protein interactions for RNA: ENST00000397053.6

UPF2-203, Transcript of UPF2, regulator of nonsense mediated mRNA decay, humanhuman

APPRIS P1 TSL 5 BASIC

Gene UPF2, Length 5,369 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF2-203ENST00000397053 SFTPA1Q8IWL2 248 aa6.56□□□□□ -1.36
UPF2-203ENST00000397053 TCTE3Q8IZS6 198 aa6.56□□□□□ -1.36
UPF2-203ENST00000397053 ANKRD53Q8N9V6 530 aa6.56□□□□□ -1.36
UPF2-203ENST00000397053 OR2M7Q8NG81 312 aa6.56□□□□□ -1.36
UPF2-203ENST00000397053 OR1M1Q8NGA1 313 aa6.56□□□□□ -1.36
UPF2-203ENST00000397053 OR6K3Q8NGY3 331 aa6.56□□□□□ -1.36
UPF2-203ENST00000397053 TMEM255BQ8WV15 326 aa6.56□□□□□ -1.36
UPF2-203ENST00000397053 ST8SIA1Q92185 356 aa6.56□□□□□ -1.36
UPF2-203ENST00000397053 STACQ99469 402 aa6.56□□□□□ -1.36
UPF2-203ENST00000397053 CTDSP1Q9GZU7 261 aa6.56□□□□□ -1.36
UPF2-203ENST00000397053 RAB1BQ9H0U4 201 aa6.56□□□□□ -1.36
UPF2-203ENST00000397053 SEMA4GQ9NTN9 838 aa6.56□□□□□ -1.36
UPF2-203ENST00000397053 CNOT1A5YKK6 2376 aaKnown RBP6.56□□□□□ -1.36
UPF2-203ENST00000397053 FITM1A5D6W6 292 aa6.56□□□□□ -1.36
UPF2-203ENST00000397053 HRO43593 1189 aa6.56□□□□□ -1.36
UPF2-203ENST00000397053 GJB3O75712 270 aa6.56□□□□□ -1.36
UPF2-203ENST00000397053 ABLIM3O94929 683 aa6.56□□□□□ -1.36
UPF2-203ENST00000397053 ZGLP1P0C6A0 271 aa6.56□□□□□ -1.36
UPF2-203ENST00000397053 ATXN1LP0C7T5 689 aaKnown RBP6.56□□□□□ -1.36
UPF2-203ENST00000397053 ACHEP22303 614 aa6.56□□□□□ -1.36
UPF2-203ENST00000397053 SSTR2P30874 369 aa6.56□□□□□ -1.36
UPF2-203ENST00000397053 ZNF83P51522 516 aa6.56□□□□□ -1.36
UPF2-203ENST00000397053 OR1C1Q15619 314 aa6.56□□□□□ -1.36
UPF2-203ENST00000397053 TBCEQ15813 527 aaPredicted RBP6.56□□□□□ -1.36
UPF2-203ENST00000397053 PCK2Q16822 640 aa6.56□□□□□ -1.36
UPF2-203ENST00000397053 Q56UQ5 140 aa6.56□□□□□ -1.36
UPF2-203ENST00000397053 ZNF766Q5HY98 468 aa6.56□□□□□ -1.36
UPF2-203ENST00000397053 SVBPQ8N300 66 aa6.56□□□□□ -1.36
UPF2-203ENST00000397053 OR51E1Q8TCB6 317 aa6.56□□□□□ -1.36
UPF2-203ENST00000397053 CCL17Q92583 94 aa6.56□□□□□ -1.36
UPF2-203ENST00000397053 ARSGQ96EG1 525 aa6.56□□□□□ -1.36
UPF2-203ENST00000397053 TCEAL7Q9BRU2 100 aa6.56□□□□□ -1.36
UPF2-203ENST00000397053 METTL17Q9H7H0 456 aaPredicted RBP6.56□□□□□ -1.36
UPF2-203ENST00000397053 PLA2G3Q9NZ20 509 aa6.56□□□□□ -1.36
UPF2-203ENST00000397053 KLK4Q9Y5K2 254 aa6.56□□□□□ -1.36
UPF2-203ENST00000397053 LOC100289279A0A1B0GTE1 492 aa6.56□□□□□ -1.36
UPF2-203ENST00000397053 METTL12A8MUP2 240 aa6.56□□□□□ -1.36
UPF2-203ENST00000397053 C2CD4DB7Z1M9 353 aa6.56□□□□□ -1.36
UPF2-203ENST00000397053 H0YIG0 161 aa6.56□□□□□ -1.36
UPF2-203ENST00000397053 SOCS7O14512 581 aa6.56□□□□□ -1.36
UPF2-203ENST00000397053 GASTP01350 101 aa6.56□□□□□ -1.36
UPF2-203ENST00000397053 SHC1P29353 583 aa6.56□□□□□ -1.36
UPF2-203ENST00000397053 TRIP6Q15654 476 aaKnown RBP6.56□□□□□ -1.36
UPF2-203ENST00000397053 TUSC1Q2TAM9 212 aa6.56□□□□□ -1.36
UPF2-203ENST00000397053 PLA1AQ53H76 456 aa6.56□□□□□ -1.36
UPF2-203ENST00000397053 ZNF628Q5EBL2 1059 aa6.56□□□□□ -1.36
UPF2-203ENST00000397053 PLXDC2Q6UX71 529 aa6.56□□□□□ -1.36
UPF2-203ENST00000397053 ZDHHC23Q8IYP9 409 aa6.56□□□□□ -1.36
UPF2-203ENST00000397053 SLC15A4Q8N697 577 aa6.56□□□□□ -1.36
UPF2-203ENST00000397053 OR2V1Q8NHB1 315 aa6.56□□□□□ -1.36
UPF2-203ENST00000397053 PHYHIPQ92561 330 aa6.56□□□□□ -1.36
UPF2-203ENST00000397053 SLAMF6Q96DU3 332 aa6.56□□□□□ -1.36
UPF2-203ENST00000397053 NEURL3Q96EH8 262 aa6.56□□□□□ -1.36
UPF2-203ENST00000397053 SLC29A1Q99808 456 aa6.56□□□□□ -1.36
UPF2-203ENST00000397053 MYOZ1Q9NP98 299 aaPredicted RBP6.56□□□□□ -1.36
UPF2-203ENST00000397053 B3GALT5Q9Y2C3 310 aa6.56□□□□□ -1.36
UPF2-203ENST00000397053 NPTNQ9Y639 398 aa6.56□□□□□ -1.36
UPF2-203ENST00000397053 MED1Q15648 1581 aaPredicted RBP6.56□□□□□ -1.36
UPF2-203ENST00000397053 COL3A1P02461 1466 aaPredicted RBP6.56□□□□□ -1.36
UPF2-203ENST00000397053 OR6C76A6NM76 312 aa6.56□□□□□ -1.36
UPF2-203ENST00000397053 ZNF716A6NP11 495 aa6.56□□□□□ -1.36
UPF2-203ENST00000397053 LMO7DNF2Z398 122 aa6.56□□□□□ -1.36
UPF2-203ENST00000397053 DHHO43323 396 aa6.56□□□□□ -1.36
UPF2-203ENST00000397053 B4GALT1P15291 398 aa6.56□□□□□ -1.36
UPF2-203ENST00000397053 CBR1P16152 277 aa6.56□□□□□ -1.36
UPF2-203ENST00000397053 RPL7P18124 248 aaKnown RBP6.56□□□□□ -1.36
UPF2-203ENST00000397053 GABRB3P28472 473 aa6.56□□□□□ -1.36
UPF2-203ENST00000397053 MRPL19P49406 292 aaKnown RBP6.56□□□□□ -1.36
UPF2-203ENST00000397053 GFERP55789 205 aa6.56□□□□□ -1.36
UPF2-203ENST00000397053 CLDN10P78369 228 aa6.56□□□□□ -1.36
UPF2-203ENST00000397053 ACKR1Q16570 336 aa6.56□□□□□ -1.36
UPF2-203ENST00000397053 DUSP5Q16690 384 aa6.56□□□□□ -1.36
UPF2-203ENST00000397053 SLC35D3Q5M8T2 416 aa6.56□□□□□ -1.36
UPF2-203ENST00000397053 PXDC1Q5TGL8 231 aa6.56□□□□□ -1.36
UPF2-203ENST00000397053 LAIR1Q6GTX8 287 aa6.56□□□□□ -1.36
UPF2-203ENST00000397053 TCTN3Q6NUS6 607 aa6.56□□□□□ -1.36
UPF2-203ENST00000397053 SLC25A26Q70HW3 274 aa6.56□□□□□ -1.36
UPF2-203ENST00000397053 HIST2H3AQ71DI3 136 aa6.56□□□□□ -1.36
UPF2-203ENST00000397053 TUSC5Q8IXB3 177 aa6.56□□□□□ -1.36
UPF2-203ENST00000397053 C3orf30Q96M34 536 aa6.56□□□□□ -1.36
UPF2-203ENST00000397053 ANKRD60Q9BZ19 345 aa6.56□□□□□ -1.36
UPF2-203ENST00000397053 C20orf85Q9H1P6 137 aa6.56□□□□□ -1.36
UPF2-203ENST00000397053 UBQLN3Q9H347 655 aa6.56□□□□□ -1.36
UPF2-203ENST00000397053 ESRP2Q9H6T0 727 aaKnown RBP6.56□□□□□ -1.36
UPF2-203ENST00000397053 FLVCR1Q9Y5Y0 555 aa6.56□□□□□ -1.36
UPF2-203ENST00000397053 OR2M5A3KFT3 312 aa6.55□□□□□ -1.36
UPF2-203ENST00000397053 MAGEB4O15481 346 aaPredicted RBP6.55□□□□□ -1.36
UPF2-203ENST00000397053 PAPLNO95428 1278 aa6.55□□□□□ -1.36
UPF2-203ENST00000397053 NPPBP16860 134 aa6.55□□□□□ -1.36
UPF2-203ENST00000397053 TNFSF8P32971 234 aa6.55□□□□□ -1.36
UPF2-203ENST00000397053 HAAOP46952 286 aa6.55□□□□□ -1.36
UPF2-203ENST00000397053 SYT14P1Q58G82 188 aa6.55□□□□□ -1.36
UPF2-203ENST00000397053 THEM4Q5T1C6 240 aa6.55□□□□□ -1.36
UPF2-203ENST00000397053 APH1BQ8WW43 257 aa6.55□□□□□ -1.36
UPF2-203ENST00000397053 ROBO4Q8WZ75 1007 aa6.55□□□□□ -1.36
UPF2-203ENST00000397053 BIRC8Q96P09 236 aa6.55□□□□□ -1.36
UPF2-203ENST00000397053 SLC25A21Q9BQT8 299 aaPredicted RBP6.55□□□□□ -1.36
UPF2-203ENST00000397053 CHRDL1Q9BU40 450 aa6.55□□□□□ -1.36
UPF2-203ENST00000397053 AAMDCQ9H7C9 122 aa6.55□□□□□ -1.36
UPF2-203ENST00000397053 GALNT9Q9HCQ5 603 aa6.55□□□□□ -1.36
Retrieved 100 of 20,778 RNA–protein pairs in 62.7 ms