RNA–Protein interactions for RNA: ENST00000394536.4

PCDH1-203, Transcript of protocadherin 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene PCDH1, Length 3,827 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PCDH1-203ENST00000394536 A8MVM7 634 aa14.56□□□□□ -0.08
PCDH1-203ENST00000394536 IFNA21P01568 189 aa14.56□□□□□ -0.08
PCDH1-203ENST00000394536 HRH1P35367 487 aa14.56□□□□□ -0.08
PCDH1-203ENST00000394536 EPHA4P54764 986 aa14.56□□□□□ -0.08
PCDH1-203ENST00000394536 ABCA11PQ4W5N1 156 aa14.56□□□□□ -0.08
PCDH1-203ENST00000394536 FHL5Q5TD97 284 aa14.56□□□□□ -0.08
PCDH1-203ENST00000394536 ELP5Q8TE02 316 aa14.56□□□□□ -0.08
PCDH1-203ENST00000394536 ELSPBP1Q96BH3 223 aa14.56□□□□□ -0.08
PCDH1-203ENST00000394536 MEMO1Q9Y316 297 aa14.56□□□□□ -0.08
PCDH1-203ENST00000394536 A0A0C4DFX4 3053 aa14.55□□□□□ -0.08
PCDH1-203ENST00000394536 SHISA8B8ZZ34 492 aa14.55□□□□□ -0.08
PCDH1-203ENST00000394536 SDCBPO00560 298 aaPredicted RBP14.55□□□□□ -0.08
PCDH1-203ENST00000394536 ZP3P21754 424 aa14.55□□□□□ -0.08
PCDH1-203ENST00000394536 POLR2HP52434 150 aaKnown RBP14.55□□□□□ -0.08
PCDH1-203ENST00000394536 ZNF117Q03924 483 aa14.55□□□□□ -0.08
PCDH1-203ENST00000394536 SNTB1Q13884 538 aaKnown RBP14.55□□□□□ -0.08
PCDH1-203ENST00000394536 RNASE11Q8TAA1 199 aaKnown RBP14.55□□□□□ -0.08
PCDH1-203ENST00000394536 GPR160Q9UJ42 338 aa14.55□□□□□ -0.08
PCDH1-203ENST00000394536 LRP12Q9Y561 859 aa14.55□□□□□ -0.08
PCDH1-203ENST00000394536 A0A1W2PQF6 199 aa14.55□□□□□ -0.08
PCDH1-203ENST00000394536 ZNF93P35789 620 aaPredicted RBP14.55□□□□□ -0.08
PCDH1-203ENST00000394536 MARCH1Q8TCQ1 289 aa14.55□□□□□ -0.08
PCDH1-203ENST00000394536 STK35Q8TDR2 534 aa14.55□□□□□ -0.08
PCDH1-203ENST00000394536 TIMP4Q99727 224 aa14.55□□□□□ -0.08
PCDH1-203ENST00000394536 LSM5Q9Y4Y9 91 aaKnown RBP14.55□□□□□ -0.08
PCDH1-203ENST00000394536 ZNF749O43361 778 aa14.55□□□□□ -0.08
PCDH1-203ENST00000394536 TNFSF14O43557 240 aa14.55□□□□□ -0.08
PCDH1-203ENST00000394536 WNT11O96014 354 aa14.55□□□□□ -0.08
PCDH1-203ENST00000394536 TPT1P13693 172 aaKnown RBP14.55□□□□□ -0.08
PCDH1-203ENST00000394536 CPN1P15169 458 aa14.55□□□□□ -0.08
PCDH1-203ENST00000394536 CSNK1EP49674 416 aaKnown RBP14.55□□□□□ -0.08
PCDH1-203ENST00000394536 SLC25A1P53007 311 aa14.55□□□□□ -0.08
PCDH1-203ENST00000394536 RGP1Q92546 391 aaPredicted RBP14.55□□□□□ -0.08
PCDH1-203ENST00000394536 PNPLA2Q96AD5 504 aa14.55□□□□□ -0.08
PCDH1-203ENST00000394536 CMTM3Q96MX0 182 aa14.55□□□□□ -0.08
PCDH1-203ENST00000394536 GDF15Q99988 308 aa14.55□□□□□ -0.08
PCDH1-203ENST00000394536 MTCL1Q9Y4B5 1905 aaKnown RBP14.54□□□□□ -0.08
PCDH1-203ENST00000394536 ATP1B3P54709 279 aa14.54□□□□□ -0.08
PCDH1-203ENST00000394536 C2orf68Q2NKX9 166 aa14.54□□□□□ -0.08
PCDH1-203ENST00000394536 MARC2Q969Z3 335 aa14.54□□□□□ -0.08
PCDH1-203ENST00000394536 CNTNAP3BQ96NU0 1288 aa14.54□□□□□ -0.08
PCDH1-203ENST00000394536 IGHV5-51A0A0C4DH38 117 aa14.54□□□□□ -0.08
PCDH1-203ENST00000394536 SMIM10L1P0DMW3 83 aa14.54□□□□□ -0.08
PCDH1-203ENST00000394536 ZNF43P17038 809 aa14.54□□□□□ -0.08
PCDH1-203ENST00000394536 GABRG2P18507 467 aa14.54□□□□□ -0.08
PCDH1-203ENST00000394536 MGAT2Q10469 447 aa14.54□□□□□ -0.08
PCDH1-203ENST00000394536 C1orf53Q5VUE5 145 aa14.54□□□□□ -0.08
PCDH1-203ENST00000394536 KIAA0895LQ68EN5 471 aa14.54□□□□□ -0.08
PCDH1-203ENST00000394536 Q6ZS52 159 aa14.54□□□□□ -0.08
PCDH1-203ENST00000394536 FAM57BQ71RH2 274 aa14.54□□□□□ -0.08
PCDH1-203ENST00000394536 RAB3CQ96E17 227 aa14.54□□□□□ -0.08
PCDH1-203ENST00000394536 SMIM10Q96HG1 83 aa14.54□□□□□ -0.08
PCDH1-203ENST00000394536 SCGB3A2Q96PL1 93 aa14.54□□□□□ -0.08
PCDH1-203ENST00000394536 CDC6Q99741 560 aa14.54□□□□□ -0.08
PCDH1-203ENST00000394536 ICAM5Q9UMF0 924 aa14.54□□□□□ -0.08
PCDH1-203ENST00000394536 PLSCR5A0PG75 271 aa14.54□□□□□ -0.08
PCDH1-203ENST00000394536 ZNF254O75437 659 aa14.54□□□□□ -0.08
PCDH1-203ENST00000394536 SERPINA2P20848 420 aa14.54□□□□□ -0.08
PCDH1-203ENST00000394536 RPS4Y1P22090 263 aaKnown RBP14.54□□□□□ -0.08
PCDH1-203ENST00000394536 OR1D5P58170 312 aa14.54□□□□□ -0.08
PCDH1-203ENST00000394536 MRPS21P82921 87 aaKnown RBP14.54□□□□□ -0.08
PCDH1-203ENST00000394536 UEVLDQ8IX04 471 aa14.54□□□□□ -0.08
PCDH1-203ENST00000394536 OR51E1Q8TCB6 317 aa14.54□□□□□ -0.08
PCDH1-203ENST00000394536 CD300LFQ8TDQ1 290 aa14.54□□□□□ -0.08
PCDH1-203ENST00000394536 NUDT9Q9BW91 350 aa14.54□□□□□ -0.08
PCDH1-203ENST00000394536 ZNF768Q9H5H4 540 aaKnown RBP14.54□□□□□ -0.08
PCDH1-203ENST00000394536 CSAG2Q9Y5P2 127 aa14.54□□□□□ -0.08
PCDH1-203ENST00000394536 FREM3P0C091 2139 aa14.54□□□□□ -0.08
PCDH1-203ENST00000394536 PRR32B1ATL7 298 aa14.53□□□□□ -0.08
PCDH1-203ENST00000394536 CDK2AP1O14519 115 aa14.53□□□□□ -0.08
PCDH1-203ENST00000394536 SERPINF1P36955 418 aa14.53□□□□□ -0.08
PCDH1-203ENST00000394536 FXYD4P59646 89 aa14.53□□□□□ -0.08
PCDH1-203ENST00000394536 EIF5AP63241 154 aaKnown RBP14.53□□□□□ -0.08
PCDH1-203ENST00000394536 FZD5Q13467 585 aa14.53□□□□□ -0.08
PCDH1-203ENST00000394536 SHHQ15465 462 aa14.53□□□□□ -0.08
PCDH1-203ENST00000394536 ATG4DQ86TL0 474 aaPredicted RBP14.53□□□□□ -0.08
PCDH1-203ENST00000394536 LRRTM1Q86UE6 522 aa14.53□□□□□ -0.08
PCDH1-203ENST00000394536 OR5T2Q8NGG2 359 aa14.53□□□□□ -0.08
PCDH1-203ENST00000394536 NECAB3Q96P71 396 aaPredicted RBP14.53□□□□□ -0.08
PCDH1-203ENST00000394536 C5orf42Q9H799 3197 aa14.53□□□□□ -0.08
PCDH1-203ENST00000394536 FAM221BA6H8Z2 402 aa14.53□□□□□ -0.08
PCDH1-203ENST00000394536 RFPL4AA6NLU0 287 aa14.53□□□□□ -0.08
PCDH1-203ENST00000394536 RFPL4AL1F8VTS6 287 aa14.53□□□□□ -0.08
PCDH1-203ENST00000394536 TMEM225BP0DP42 221 aa14.53□□□□□ -0.08
PCDH1-203ENST00000394536 NME2P22392 152 aa14.53□□□□□ -0.08
PCDH1-203ENST00000394536 CD38P28907 300 aa14.53□□□□□ -0.08
PCDH1-203ENST00000394536 GPR3P46089 330 aa14.53□□□□□ -0.08
PCDH1-203ENST00000394536 DAP3P51398 398 aaKnown RBP14.53□□□□□ -0.08
PCDH1-203ENST00000394536 MFSD13AQ14CX5 517 aa14.53□□□□□ -0.08
PCDH1-203ENST00000394536 EMC4Q5J8M3 183 aa14.53□□□□□ -0.08
PCDH1-203ENST00000394536 GLIPR1L1Q6UWM5 242 aa14.53□□□□□ -0.08
PCDH1-203ENST00000394536 ZFP82Q8N141 532 aa14.53□□□□□ -0.08
PCDH1-203ENST00000394536 OR52N5Q8NH56 324 aa14.53□□□□□ -0.08
PCDH1-203ENST00000394536 RBM24Q9BX46 236 aaKnown RBP14.53□□□□□ -0.08
PCDH1-203ENST00000394536 EHFQ9NZC4 300 aa14.53□□□□□ -0.08
PCDH1-203ENST00000394536 MPDZO75970 2070 aa14.53□□□□□ -0.08
PCDH1-203ENST00000394536 SPTY2D1-AS1A0A0U1RR47 76 aa14.53□□□□□ -0.08
PCDH1-203ENST00000394536 UPK3AO75631 287 aa14.53□□□□□ -0.08
PCDH1-203ENST00000394536 HNRNPKP61978 463 aaKnown RBP eCLIP14.53□□□□□ -0.08
PCDH1-203ENST00000394536 LINC01590Q5TEZ4 76 aa14.53□□□□□ -0.08
Retrieved 100 of 20,778 RNA–protein pairs in 26 ms