RNA–Protein interactions for RNA: ENST00000347401.7

COL6A3-202, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 5 BASIC

Gene COL6A3, Length 8,625 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-202ENST00000347401 ZNF480Q8WV37 535 aa12.22□□□□□ -0.45
COL6A3-202ENST00000347401 RNF39Q9H2S5 420 aa12.22□□□□□ -0.45
COL6A3-202ENST00000347401 SIPA1L3O60292 1781 aaPredicted RBP12.22□□□□□ -0.45
COL6A3-202ENST00000347401 NCR1O76036 304 aa12.22□□□□□ -0.45
COL6A3-202ENST00000347401 APOBEC1P41238 236 aaKnown RBP12.22□□□□□ -0.45
COL6A3-202ENST00000347401 ERHP84090 104 aaKnown RBP12.22□□□□□ -0.45
COL6A3-202ENST00000347401 OR52R1Q8NGF1 315 aa12.22□□□□□ -0.45
COL6A3-202ENST00000347401 WDFY2Q96P53 400 aa12.22□□□□□ -0.45
COL6A3-202ENST00000347401 FLVCR1Q9Y5Y0 555 aa12.22□□□□□ -0.45
COL6A3-202ENST00000347401 TCAPO15273 167 aa12.22□□□□□ -0.45
COL6A3-202ENST00000347401 DEDDO75618 318 aa12.22□□□□□ -0.45
COL6A3-202ENST00000347401 SLCO2B1O94956 709 aa12.22□□□□□ -0.45
COL6A3-202ENST00000347401 SMIM17P0DL12 118 aa12.22□□□□□ -0.45
COL6A3-202ENST00000347401 FCGR2CP31995 323 aa12.22□□□□□ -0.45
COL6A3-202ENST00000347401 MRPL19P49406 292 aaKnown RBP12.22□□□□□ -0.45
COL6A3-202ENST00000347401 FCRLBQ6BAA4 426 aa12.22□□□□□ -0.45
COL6A3-202ENST00000347401 HTR3DQ70Z44 454 aa12.22□□□□□ -0.45
COL6A3-202ENST00000347401 IFI44Q8TCB0 444 aa12.22□□□□□ -0.45
COL6A3-202ENST00000347401 ANAPC16Q96DE5 110 aa12.22□□□□□ -0.45
COL6A3-202ENST00000347401 WDR61Q9GZS3 305 aaKnown RBP12.22□□□□□ -0.45
COL6A3-202ENST00000347401 VSX1Q9NZR4 365 aaPredicted RBP12.22□□□□□ -0.45
COL6A3-202ENST00000347401 K7ERU9 68 aa12.22□□□□□ -0.45
COL6A3-202ENST00000347401 SEMA4FO95754 770 aa12.22□□□□□ -0.45
COL6A3-202ENST00000347401 GYPBP06028 91 aa12.22□□□□□ -0.45
COL6A3-202ENST00000347401 G0S2P27469 103 aa12.22□□□□□ -0.45
COL6A3-202ENST00000347401 SIM1P81133 766 aaPredicted RBP12.22□□□□□ -0.45
COL6A3-202ENST00000347401 ZNF787Q6DD87 383 aa12.22□□□□□ -0.45
COL6A3-202ENST00000347401 ZBTB44Q8NCP5 570 aa12.22□□□□□ -0.45
COL6A3-202ENST00000347401 OR2AK2Q8NG84 335 aa12.22□□□□□ -0.45
COL6A3-202ENST00000347401 LHX4Q969G2 390 aa12.22□□□□□ -0.45
COL6A3-202ENST00000347401 CLCF1Q9UBD9 225 aa12.22□□□□□ -0.45
COL6A3-202ENST00000347401 CACNA1BQ00975 2339 aa12.22□□□□□ -0.45
COL6A3-202ENST00000347401 PMP2P02689 132 aa12.22□□□□□ -0.45
COL6A3-202ENST00000347401 OR10P1Q8NGE3 313 aa12.22□□□□□ -0.45
COL6A3-202ENST00000347401 RAB24Q969Q5 203 aa12.22□□□□□ -0.45
COL6A3-202ENST00000347401 CMC2Q9NRP2 79 aa12.22□□□□□ -0.45
COL6A3-202ENST00000347401 STRCQ7RTU9 1775 aa12.22□□□□□ -0.45
COL6A3-202ENST00000347401 ABCA3Q99758 1704 aa12.22□□□□□ -0.45
COL6A3-202ENST00000347401 ZNF354AO60765 605 aaPredicted RBP12.22□□□□□ -0.45
COL6A3-202ENST00000347401 TXNDC12O95881 172 aa12.22□□□□□ -0.45
COL6A3-202ENST00000347401 SHC1P29353 583 aa12.22□□□□□ -0.45
COL6A3-202ENST00000347401 VASPP50552 380 aaPredicted RBP12.22□□□□□ -0.45
COL6A3-202ENST00000347401 FAM189BP81408 668 aa12.22□□□□□ -0.45
COL6A3-202ENST00000347401 XKR7Q5GH72 579 aa12.22□□□□□ -0.45
COL6A3-202ENST00000347401 B3GNTL1Q67FW5 361 aaPredicted RBP12.22□□□□□ -0.45
COL6A3-202ENST00000347401 CSNK1G1Q9HCP0 422 aa12.22□□□□□ -0.45
COL6A3-202ENST00000347401 LOC102723971A0A1B0GUV8 181 aa12.21□□□□□ -0.45
COL6A3-202ENST00000347401 FZD6O60353 706 aa12.21□□□□□ -0.45
COL6A3-202ENST00000347401 HTR6P50406 440 aa12.21□□□□□ -0.45
COL6A3-202ENST00000347401 RBPJQ06330 500 aa12.21□□□□□ -0.45
COL6A3-202ENST00000347401 MOB3CQ70IA8 216 aa12.21□□□□□ -0.45
COL6A3-202ENST00000347401 ZNF107Q9UII5 783 aaPredicted RBP12.21□□□□□ -0.45
COL6A3-202ENST00000347401 RPH3ALQ9UNE2 315 aa12.21□□□□□ -0.45
COL6A3-202ENST00000347401 SLC35E2P0CK97 266 aa12.21□□□□□ -0.45
COL6A3-202ENST00000347401 NOVA1P51513 510 aaKnown RBP12.21□□□□□ -0.45
COL6A3-202ENST00000347401 RRADP55042 308 aa12.21□□□□□ -0.45
COL6A3-202ENST00000347401 OLIG1Q8TAK6 271 aa12.21□□□□□ -0.45
COL6A3-202ENST00000347401 NAA50Q9GZZ1 169 aaKnown RBP12.21□□□□□ -0.45
COL6A3-202ENST00000347401 POMT2Q9UKY4 750 aa12.21□□□□□ -0.45
COL6A3-202ENST00000347401 ALS2Q96Q42 1657 aa12.21□□□□□ -0.45
COL6A3-202ENST00000347401 IGKV6D-21A0A0A0MT36 114 aa12.21□□□□□ -0.45
COL6A3-202ENST00000347401 CRYM-AS1A6NIL9 109 aa12.21□□□□□ -0.45
COL6A3-202ENST00000347401 HNF1AP20823 631 aa12.21□□□□□ -0.45
COL6A3-202ENST00000347401 KIR2DL3P43628 341 aa12.21□□□□□ -0.45
COL6A3-202ENST00000347401 TTC9Q92623 222 aa12.21□□□□□ -0.45
COL6A3-202ENST00000347401 ATF6BQ99941 703 aa12.21□□□□□ -0.45
COL6A3-202ENST00000347401 NXPH2O95156 264 aa12.21□□□□□ -0.45
COL6A3-202ENST00000347401 AIFM1O95831 613 aa12.21□□□□□ -0.45
COL6A3-202ENST00000347401 HEXAP06865 529 aa12.21□□□□□ -0.45
COL6A3-202ENST00000347401 F7P08709 466 aaPredicted RBP12.21□□□□□ -0.45
COL6A3-202ENST00000347401 TCN2P20062 427 aa12.21□□□□□ -0.45
COL6A3-202ENST00000347401 TCEAL8Q8IYN2 117 aa12.21□□□□□ -0.45
COL6A3-202ENST00000347401 TMEM130Q8N3G9 435 aa12.21□□□□□ -0.45
COL6A3-202ENST00000347401 TMEM104Q8NE00 496 aa12.21□□□□□ -0.45
COL6A3-202ENST00000347401 ARHGAP9Q9BRR9 750 aa12.21□□□□□ -0.45
COL6A3-202ENST00000347401 BOCQ9BWV1 1114 aa12.21□□□□□ -0.45
COL6A3-202ENST00000347401 SLC5A6Q9Y289 635 aa12.21□□□□□ -0.45
COL6A3-202ENST00000347401 PARP14Q460N5 1801 aa12.21□□□□□ -0.45
COL6A3-202ENST00000347401 ABCD3P28288 659 aa12.21□□□□□ -0.45
COL6A3-202ENST00000347401 PJVKQ0ZLH3 352 aa12.21□□□□□ -0.45
COL6A3-202ENST00000347401 SIRT7Q9NRC8 400 aa12.21□□□□□ -0.45
COL6A3-202ENST00000347401 LTBP3Q9NS15 1303 aa12.21□□□□□ -0.46
COL6A3-202ENST00000347401 A6NDN8 102 aa12.21□□□□□ -0.46
COL6A3-202ENST00000347401 HSBP1O75506 76 aa12.21□□□□□ -0.46
COL6A3-202ENST00000347401 CST4P01036 141 aa12.21□□□□□ -0.46
COL6A3-202ENST00000347401 OR8G3PP0DMU2 310 aa12.21□□□□□ -0.46
COL6A3-202ENST00000347401 CEBPEQ15744 281 aa12.21□□□□□ -0.46
COL6A3-202ENST00000347401 OR4E1P0C645 316 aa12.21□□□□□ -0.46
COL6A3-202ENST00000347401 RPA2P15927 270 aa12.21□□□□□ -0.46
COL6A3-202ENST00000347401 CBR1P16152 277 aa12.21□□□□□ -0.46
COL6A3-202ENST00000347401 FGF9P31371 208 aaPredicted RBP12.21□□□□□ -0.46
COL6A3-202ENST00000347401 NPY4RP50391 375 aa12.21□□□□□ -0.46
COL6A3-202ENST00000347401 ZNF573Q86YE8 665 aa12.21□□□□□ -0.46
COL6A3-202ENST00000347401 C16orf70Q9BSU1 422 aa12.21□□□□□ -0.46
COL6A3-202ENST00000347401 FLVCR2Q9UPI3 526 aa12.21□□□□□ -0.46
COL6A3-202ENST00000347401 CCDC187A0A096LP49 1063 aa12.2□□□□□ -0.46
COL6A3-202ENST00000347401 RNASEK-C17orf49H0YIS7 233 aa12.2□□□□□ -0.46
COL6A3-202ENST00000347401 AP4M1O00189 453 aa12.2□□□□□ -0.46
COL6A3-202ENST00000347401 ADPRHP54922 357 aa12.2□□□□□ -0.46
COL6A3-202ENST00000347401 ADAMTSL4Q6UY14 1074 aa12.2□□□□□ -0.46
Retrieved 100 of 20,778 RNA–protein pairs in 31.3 ms