RNA–Protein interactions for RNA: ENST00000316707.10

PTPN13-201, Transcript of protein tyrosine phosphatase, non-receptor type 13, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene PTPN13, Length 7,546 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN13-201ENST00000316707 HSFX3A0A1B0GWH4 333 aaPredicted RBP4.3□□□□□ -1.72
PTPN13-201ENST00000316707 HLA-DQA2P01906 255 aa4.3□□□□□ -1.72
PTPN13-201ENST00000316707 PRICKLE4Q2TBC4 344 aa4.3□□□□□ -1.72
PTPN13-201ENST00000316707 ZNF260Q3ZCT1 412 aa4.3□□□□□ -1.72
PTPN13-201ENST00000316707 SOHLH1Q5JUK2 328 aa4.3□□□□□ -1.72
PTPN13-201ENST00000316707 FIGLAQ6QHK4 219 aa4.3□□□□□ -1.72
PTPN13-201ENST00000316707 SSX9Q7RTT3 188 aa4.3□□□□□ -1.72
PTPN13-201ENST00000316707 TRAPPC6BQ86SZ2 158 aa4.3□□□□□ -1.72
PTPN13-201ENST00000316707 LRRC75AQ8NAA5 344 aa4.3□□□□□ -1.72
PTPN13-201ENST00000316707 RNF166Q96A37 237 aaPredicted RBP4.3□□□□□ -1.72
PTPN13-201ENST00000316707 ASB16Q96NS5 453 aa4.3□□□□□ -1.72
PTPN13-201ENST00000316707 PARPBPQ9NWS1 579 aa4.3□□□□□ -1.72
PTPN13-201ENST00000316707 GHRLQ9UBU3 117 aa4.3□□□□□ -1.72
PTPN13-201ENST00000316707 KCNG2Q9UJ96 466 aa4.3□□□□□ -1.72
PTPN13-201ENST00000316707 STARD10Q9Y365 291 aa4.3□□□□□ -1.72
PTPN13-201ENST00000316707 TMED7Q9Y3B3 224 aa4.3□□□□□ -1.72
PTPN13-201ENST00000316707 CHD5Q8TDI0 1954 aa4.3□□□□□ -1.72
PTPN13-201ENST00000316707 LOC390937A0A1W2PQ73 354 aa4.3□□□□□ -1.72
PTPN13-201ENST00000316707 DCDC2BA2VCK2 349 aa4.3□□□□□ -1.72
PTPN13-201ENST00000316707 CXorf65A6NEN9 183 aa4.3□□□□□ -1.72
PTPN13-201ENST00000316707 PRR19A6NJB7 356 aa4.3□□□□□ -1.72
PTPN13-201ENST00000316707 OR52A4PA6NMU1 304 aa4.3□□□□□ -1.72
PTPN13-201ENST00000316707 M0R036 132 aa4.3□□□□□ -1.72
PTPN13-201ENST00000316707 ALOX12BO75342 701 aa4.3□□□□□ -1.72
PTPN13-201ENST00000316707 ADH1BP00325 375 aa4.3□□□□□ -1.72
PTPN13-201ENST00000316707 STATHP02808 62 aa4.3□□□□□ -1.72
PTPN13-201ENST00000316707 ZNF823P16415 610 aa4.3□□□□□ -1.72
PTPN13-201ENST00000316707 SGCBQ16585 318 aa4.3□□□□□ -1.72
PTPN13-201ENST00000316707 FBXO42Q6P3S6 717 aa4.3□□□□□ -1.72
PTPN13-201ENST00000316707 ATG4DQ86TL0 474 aaPredicted RBP4.3□□□□□ -1.72
PTPN13-201ENST00000316707 HOGA1Q86XE5 327 aa4.3□□□□□ -1.72
PTPN13-201ENST00000316707 ASB5Q8WWX0 329 aa4.3□□□□□ -1.72
PTPN13-201ENST00000316707 GAL3ST1Q99999 423 aa4.3□□□□□ -1.72
PTPN13-201ENST00000316707 UBQLN4Q9NRR5 601 aa4.3□□□□□ -1.72
PTPN13-201ENST00000316707 FBXO34Q9NWN3 711 aa4.3□□□□□ -1.72
PTPN13-201ENST00000316707 PCOLCE2Q9UKZ9 415 aa4.3□□□□□ -1.72
PTPN13-201ENST00000316707 B9D1Q9UPM9 204 aa4.3□□□□□ -1.72
PTPN13-201ENST00000316707 FAM96BQ9Y3D0 163 aa4.3□□□□□ -1.72
PTPN13-201ENST00000316707 MIA3Q5JRA6 1907 aa4.3□□□□□ -1.72
PTPN13-201ENST00000316707 FITM1A5D6W6 292 aa4.3□□□□□ -1.72
PTPN13-201ENST00000316707 MEIS3P1A6NDR6 274 aa4.3□□□□□ -1.72
PTPN13-201ENST00000316707 K7EPK0 472 aa4.3□□□□□ -1.72
PTPN13-201ENST00000316707 ADAM10O14672 748 aa4.3□□□□□ -1.72
PTPN13-201ENST00000316707 PPP1R2P9O14990 202 aa4.3□□□□□ -1.72
PTPN13-201ENST00000316707 CXCL14O95715 111 aa4.3□□□□□ -1.72
PTPN13-201ENST00000316707 IGHV2-5P01817 119 aa4.3□□□□□ -1.72
PTPN13-201ENST00000316707 SNRNP70P08621 437 aaKnown RBP4.3□□□□□ -1.72
PTPN13-201ENST00000316707 ELNP15502 786 aa4.3□□□□□ -1.72
PTPN13-201ENST00000316707 CDX1P47902 265 aaPredicted RBP4.3□□□□□ -1.72
PTPN13-201ENST00000316707 TAS2R46P59540 309 aa4.3□□□□□ -1.72
PTPN13-201ENST00000316707 PLAURQ03405 335 aa4.3□□□□□ -1.72
PTPN13-201ENST00000316707 ZNF239Q16600 458 aaKnown RBP4.3□□□□□ -1.72
PTPN13-201ENST00000316707 GPR157Q5UAW9 335 aa4.3□□□□□ -1.72
PTPN13-201ENST00000316707 ADAM5Q6NVV9 412 aa4.3□□□□□ -1.72
PTPN13-201ENST00000316707 FAM71E2Q8N5Q1 922 aa4.3□□□□□ -1.72
PTPN13-201ENST00000316707 OR52R1Q8NGF1 315 aa4.3□□□□□ -1.72
PTPN13-201ENST00000316707 OR10AC1Q8NH08 325 aa4.3□□□□□ -1.72
PTPN13-201ENST00000316707 BMFQ96LC9 184 aa4.3□□□□□ -1.72
PTPN13-201ENST00000316707 LPAR4Q99677 370 aa4.3□□□□□ -1.72
PTPN13-201ENST00000316707 TM7SF3Q9NS93 570 aa4.3□□□□□ -1.72
PTPN13-201ENST00000316707 THAP10Q9P2Z0 257 aaPredicted RBP4.3□□□□□ -1.72
PTPN13-201ENST00000316707 CACFD1Q9UGQ2 172 aa4.3□□□□□ -1.72
PTPN13-201ENST00000316707 VSIG4Q9Y279 399 aa4.3□□□□□ -1.72
PTPN13-201ENST00000316707 SLC5A6Q9Y289 635 aa4.3□□□□□ -1.72
PTPN13-201ENST00000316707 A6NIZ1 184 aa4.3□□□□□ -1.72
PTPN13-201ENST00000316707 PRR32B1ATL7 298 aa4.3□□□□□ -1.72
PTPN13-201ENST00000316707 CYR61O00622 381 aa4.3□□□□□ -1.72
PTPN13-201ENST00000316707 NARSO43776 548 aaKnown RBP4.3□□□□□ -1.72
PTPN13-201ENST00000316707 CA11O75493 328 aa4.3□□□□□ -1.72
PTPN13-201ENST00000316707 RHOP08100 348 aa4.3□□□□□ -1.72
PTPN13-201ENST00000316707 IGFBP3P17936 291 aaPredicted RBP4.3□□□□□ -1.72
PTPN13-201ENST00000316707 RAP1BP61224 184 aa4.3□□□□□ -1.72
PTPN13-201ENST00000316707 RAP1AP62834 184 aa4.3□□□□□ -1.72
PTPN13-201ENST00000316707 MGAT2Q10469 447 aa4.3□□□□□ -1.72
PTPN13-201ENST00000316707 SRSF5Q13243 272 aaKnown RBP4.3□□□□□ -1.72
PTPN13-201ENST00000316707 EXOSC7Q15024 291 aaKnown RBP4.3□□□□□ -1.72
PTPN13-201ENST00000316707 ZNF529Q6P280 563 aa4.3□□□□□ -1.72
PTPN13-201ENST00000316707 DHRS11Q6UWP2 260 aa4.3□□□□□ -1.72
PTPN13-201ENST00000316707 BOLLQ8N9W6 283 aaKnown RBP4.3□□□□□ -1.72
PTPN13-201ENST00000316707 PLPP7Q8NBV4 271 aa4.3□□□□□ -1.72
PTPN13-201ENST00000316707 FNDC9Q8TBE3 224 aa4.3□□□□□ -1.72
PTPN13-201ENST00000316707 PRRX2Q99811 253 aa4.3□□□□□ -1.72
PTPN13-201ENST00000316707 METTL8Q9H825 291 aaKnown RBP4.3□□□□□ -1.72
PTPN13-201ENST00000316707 UCK1Q9HA47 277 aa4.3□□□□□ -1.72
PTPN13-201ENST00000316707 CUTCQ9NTM9 273 aa4.3□□□□□ -1.72
PTPN13-201ENST00000316707 PILRAQ9UKJ1 303 aa4.3□□□□□ -1.72
PTPN13-201ENST00000316707 LATO43561 262 aa4.3□□□□□ -1.72
PTPN13-201ENST00000316707 SLC34A2O95436 690 aa4.3□□□□□ -1.72
PTPN13-201ENST00000316707 CEACAM5P06731 702 aa4.3□□□□□ -1.72
PTPN13-201ENST00000316707 HOXC4P09017 264 aaPredicted RBP4.3□□□□□ -1.72
PTPN13-201ENST00000316707 ASAH2BP0C7U1 165 aa4.3□□□□□ -1.72
PTPN13-201ENST00000316707 ZNF44P15621 663 aa4.3□□□□□ -1.72
PTPN13-201ENST00000316707 MAS1LP35410 378 aa4.3□□□□□ -1.72
PTPN13-201ENST00000316707 CCR4P51679 360 aa4.3□□□□□ -1.72
PTPN13-201ENST00000316707 KIAA0141Q14154 515 aaPredicted RBP4.3□□□□□ -1.72
PTPN13-201ENST00000316707 PPA1Q15181 289 aa4.3□□□□□ -1.72
PTPN13-201ENST00000316707 MST1LQ2TV78 715 aa4.3□□□□□ -1.72
PTPN13-201ENST00000316707 SLC29A4Q7RTT9 530 aa4.3□□□□□ -1.72
PTPN13-201ENST00000316707 ANKRD33Q7Z3H0 272 aa4.3□□□□□ -1.72
PTPN13-201ENST00000316707 FJX1Q86VR8 437 aa4.3□□□□□ -1.72
Retrieved 100 of 20,778 RNA–protein pairs in 70.1 ms