RNA–Protein interactions for RNA: ENST00000308508.5

CSPG4-201, Transcript of chondroitin sulfate proteoglycan 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CSPG4, Length 8,290 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CSPG4-201ENST00000308508 EDDM3AQ14507 147 aa12.71□□□□□ -0.37
CSPG4-201ENST00000308508 YOD1Q5VVQ6 348 aaPredicted RBP12.71□□□□□ -0.37
CSPG4-201ENST00000308508 GALNT16Q8N428 558 aa12.71□□□□□ -0.37
CSPG4-201ENST00000308508 NOL4LQ96MY1 436 aaPredicted RBP12.71□□□□□ -0.37
CSPG4-201ENST00000308508 CXorf36Q9H7Y0 433 aa12.71□□□□□ -0.37
CSPG4-201ENST00000308508 EFSO43281 561 aa12.71□□□□□ -0.38
CSPG4-201ENST00000308508 GPR12P47775 334 aa12.71□□□□□ -0.38
CSPG4-201ENST00000308508 ZNF384Q8TF68 577 aa12.71□□□□□ -0.38
CSPG4-201ENST00000308508 PPP1R3CQ9UQK1 317 aa12.71□□□□□ -0.38
CSPG4-201ENST00000308508 CHST2Q9Y4C5 530 aa12.71□□□□□ -0.38
CSPG4-201ENST00000308508 A0A0B4J203 849 aa12.71□□□□□ -0.38
CSPG4-201ENST00000308508 FITM1A5D6W6 292 aa12.71□□□□□ -0.38
CSPG4-201ENST00000308508 AQP8O94778 261 aa12.71□□□□□ -0.38
CSPG4-201ENST00000308508 ETFDHQ16134 617 aa12.71□□□□□ -0.38
CSPG4-201ENST00000308508 LYG2Q86SG7 212 aa12.71□□□□□ -0.38
CSPG4-201ENST00000308508 TCTEX1D1Q8N7M0 179 aa12.71□□□□□ -0.38
CSPG4-201ENST00000308508 C19orf47Q8N9M1 422 aaKnown RBP12.71□□□□□ -0.38
CSPG4-201ENST00000308508 ARRDC2Q8TBH0 407 aa12.71□□□□□ -0.38
CSPG4-201ENST00000308508 C2orf50Q96LR7 162 aa12.71□□□□□ -0.38
CSPG4-201ENST00000308508 HSPB2A8KAH6 182 aa12.71□□□□□ -0.38
CSPG4-201ENST00000308508 TMEM127O75204 238 aa12.71□□□□□ -0.38
CSPG4-201ENST00000308508 KCNJ3P48549 501 aa12.71□□□□□ -0.38
CSPG4-201ENST00000308508 RBP2P50120 134 aa12.71□□□□□ -0.38
CSPG4-201ENST00000308508 ISL1P61371 349 aa12.71□□□□□ -0.38
CSPG4-201ENST00000308508 HSPB2Q16082 182 aa12.71□□□□□ -0.38
CSPG4-201ENST00000308508 ZNF511Q8NB15 262 aa12.71□□□□□ -0.38
CSPG4-201ENST00000308508 RHOFQ9HBH0 211 aa12.71□□□□□ -0.38
CSPG4-201ENST00000308508 MMP26Q9NRE1 261 aa12.71□□□□□ -0.38
CSPG4-201ENST00000308508 KIAA1456Q9P272 454 aa12.71□□□□□ -0.38
CSPG4-201ENST00000308508 OR2M5A3KFT3 312 aa12.7□□□□□ -0.38
CSPG4-201ENST00000308508 LHFPL2Q6ZUX7 228 aa12.7□□□□□ -0.38
CSPG4-201ENST00000308508 SCCPDHQ8NBX0 429 aa12.7□□□□□ -0.38
CSPG4-201ENST00000308508 BOD1Q96IK1 185 aa12.7□□□□□ -0.38
CSPG4-201ENST00000308508 SCO1O75880 301 aa12.7□□□□□ -0.38
CSPG4-201ENST00000308508 CST2P09228 141 aa12.7□□□□□ -0.38
CSPG4-201ENST00000308508 FCRL6Q6DN72 434 aa12.7□□□□□ -0.38
CSPG4-201ENST00000308508 TSEN54Q7Z6J9 526 aaKnown RBP12.7□□□□□ -0.38
CSPG4-201ENST00000308508 DTWD2Q8NBA8 298 aa12.7□□□□□ -0.38
CSPG4-201ENST00000308508 DCBLD2Q96PD2 775 aa12.7□□□□□ -0.38
CSPG4-201ENST00000308508 OR2A14Q96R47 310 aa12.7□□□□□ -0.38
CSPG4-201ENST00000308508 GLIPR2Q9H4G4 154 aa12.7□□□□□ -0.38
CSPG4-201ENST00000308508 CCDC187A0A096LP49 1063 aa12.7□□□□□ -0.38
CSPG4-201ENST00000308508 DHODHQ02127 395 aa12.7□□□□□ -0.38
CSPG4-201ENST00000308508 BLNKQ8WV28 456 aa12.7□□□□□ -0.38
CSPG4-201ENST00000308508 TRIB1Q96RU8 372 aa12.7□□□□□ -0.38
CSPG4-201ENST00000308508 STACQ99469 402 aa12.7□□□□□ -0.38
CSPG4-201ENST00000308508 RTL8AQ9BWD3 113 aa12.7□□□□□ -0.38
CSPG4-201ENST00000308508 GABARAPL1Q9H0R8 117 aa12.7□□□□□ -0.38
CSPG4-201ENST00000308508 OR2J3O76001 311 aa12.7□□□□□ -0.38
CSPG4-201ENST00000308508 OR5G3P0C626 314 aa12.7□□□□□ -0.38
CSPG4-201ENST00000308508 EVX1P49640 407 aa12.7□□□□□ -0.38
CSPG4-201ENST00000308508 RELL2Q8NC24 303 aaPredicted RBP12.7□□□□□ -0.38
CSPG4-201ENST00000308508 NAT6Q93015 286 aa12.7□□□□□ -0.38
CSPG4-201ENST00000308508 UCN3Q969E3 161 aa12.7□□□□□ -0.38
CSPG4-201ENST00000308508 CMBLQ96DG6 245 aa12.7□□□□□ -0.38
CSPG4-201ENST00000308508 IKZF5Q9H5V7 419 aa12.7□□□□□ -0.38
CSPG4-201ENST00000308508 BET1LQ9NYM9 111 aa12.7□□□□□ -0.38
CSPG4-201ENST00000308508 SLCO1B1Q9Y6L6 691 aa12.7□□□□□ -0.38
CSPG4-201ENST00000308508 IQCF3P0C7M6 154 aa12.7□□□□□ -0.38
CSPG4-201ENST00000308508 AKR1C3P42330 323 aa12.7□□□□□ -0.38
CSPG4-201ENST00000308508 EGR3Q06889 387 aa12.7□□□□□ -0.38
CSPG4-201ENST00000308508 GUK1Q16774 197 aa12.7□□□□□ -0.38
CSPG4-201ENST00000308508 OR2AK2Q8NG84 335 aa12.7□□□□□ -0.38
CSPG4-201ENST00000308508 OR2A1Q8NGT9 310 aa12.7□□□□□ -0.38
CSPG4-201ENST00000308508 PFN4Q8NHR9 129 aa12.7□□□□□ -0.38
CSPG4-201ENST00000308508 RNF24Q9Y225 148 aa12.7□□□□□ -0.38
CSPG4-201ENST00000308508 TRIP11Q15643 1979 aa12.7□□□□□ -0.38
CSPG4-201ENST00000308508 HCRTR1O43613 425 aa12.7□□□□□ -0.38
CSPG4-201ENST00000308508 GP2P55259 537 aaKnown RBP12.7□□□□□ -0.38
CSPG4-201ENST00000308508 FAM174AQ8TBP5 190 aa12.7□□□□□ -0.38
CSPG4-201ENST00000308508 UTP23Q9BRU9 249 aaKnown RBP12.7□□□□□ -0.38
CSPG4-201ENST00000308508 GABARAPL3Q9BY60 117 aa12.7□□□□□ -0.38
CSPG4-201ENST00000308508 SH2D1BO14796 132 aa12.69□□□□□ -0.38
CSPG4-201ENST00000308508 TCN2P20062 427 aa12.69□□□□□ -0.38
CSPG4-201ENST00000308508 CLDN2P57739 230 aa12.69□□□□□ -0.38
CSPG4-201ENST00000308508 GNB1P62873 340 aa12.69□□□□□ -0.38
CSPG4-201ENST00000308508 H1FNTQ75WM6 255 aaPredicted RBP12.69□□□□□ -0.38
CSPG4-201ENST00000308508 OLIG1Q8TAK6 271 aa12.69□□□□□ -0.38
CSPG4-201ENST00000308508 TEAD3Q99594 435 aa12.69□□□□□ -0.38
CSPG4-201ENST00000308508 LRIT1Q9P2V4 623 aa12.69□□□□□ -0.38
CSPG4-201ENST00000308508 HRH1P35367 487 aa12.69□□□□□ -0.38
CSPG4-201ENST00000308508 KIR2DL3P43628 341 aa12.69□□□□□ -0.38
CSPG4-201ENST00000308508 SULT1A2P50226 295 aa12.69□□□□□ -0.38
CSPG4-201ENST00000308508 GGNBP1Q5YKI7 109 aa12.69□□□□□ -0.38
CSPG4-201ENST00000308508 B3GNT9Q6UX72 402 aa12.69□□□□□ -0.38
CSPG4-201ENST00000308508 PPP1R1CQ8WVI7 109 aa12.69□□□□□ -0.38
CSPG4-201ENST00000308508 PSENENQ9NZ42 101 aa12.69□□□□□ -0.38
CSPG4-201ENST00000308508 LAMA4Q16363 1823 aa12.69□□□□□ -0.38
CSPG4-201ENST00000308508 KIF13AQ9H1H9 1805 aa12.69□□□□□ -0.38
CSPG4-201ENST00000308508 GALR2O43603 387 aaPredicted RBP12.69□□□□□ -0.38
CSPG4-201ENST00000308508 LRP3O75074 770 aa12.69□□□□□ -0.38
CSPG4-201ENST00000308508 GPX2P18283 190 aa12.69□□□□□ -0.38
CSPG4-201ENST00000308508 MFSD12Q6NUT3 480 aa12.69□□□□□ -0.38
CSPG4-201ENST00000308508 DRAM2Q6UX65 266 aa12.69□□□□□ -0.38
CSPG4-201ENST00000308508 PARS2Q7L3T8 475 aaKnown RBP12.69□□□□□ -0.38
CSPG4-201ENST00000308508 PELI3Q8N2H9 469 aa12.69□□□□□ -0.38
CSPG4-201ENST00000308508 FAM26EQ8N5C1 309 aa12.69□□□□□ -0.38
CSPG4-201ENST00000308508 PTDSS2Q9BVG9 487 aa12.69□□□□□ -0.38
CSPG4-201ENST00000308508 CALHM2Q9HA72 323 aa12.69□□□□□ -0.38
CSPG4-201ENST00000308508 TAAR2Q9P1P5 351 aa12.69□□□□□ -0.38
Retrieved 100 of 20,778 RNA–protein pairs in 25.8 ms