RNA–Protein interactions for RNA: ENST00000307340.7

USH2A-201, Transcript of usherin, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene USH2A, Length 18,883 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USH2A-201ENST00000307340 SLC25A44Q96H78 314 aaPredicted RBP3.67□□□□□ -1.82
USH2A-201ENST00000307340 HBEGFQ99075 208 aa3.67□□□□□ -1.82
USH2A-201ENST00000307340 SLC52A3Q9NQ40 469 aa3.67□□□□□ -1.82
USH2A-201ENST00000307340 CCL16O15467 120 aa3.67□□□□□ -1.82
USH2A-201ENST00000307340 PDGFAP04085 211 aa3.67□□□□□ -1.82
USH2A-201ENST00000307340 CAPNS1P04632 268 aa3.67□□□□□ -1.82
USH2A-201ENST00000307340 PRF1P14222 555 aa3.67□□□□□ -1.82
USH2A-201ENST00000307340 GDNFP39905 211 aa3.67□□□□□ -1.82
USH2A-201ENST00000307340 SGSHP51688 502 aa3.67□□□□□ -1.82
USH2A-201ENST00000307340 MRPL58Q14197 206 aaKnown RBP3.67□□□□□ -1.82
USH2A-201ENST00000307340 HLXQ14774 488 aaPredicted RBP3.67□□□□□ -1.82
USH2A-201ENST00000307340 CLLU1OSQ5K130 101 aa3.67□□□□□ -1.82
USH2A-201ENST00000307340 MRPL2Q5T653 305 aaKnown RBP3.67□□□□□ -1.82
USH2A-201ENST00000307340 DGAT2L6Q6ZPD8 337 aa3.67□□□□□ -1.82
USH2A-201ENST00000307340 SAMD10Q9BYL1 202 aa3.67□□□□□ -1.82
USH2A-201ENST00000307340 POLD4Q9HCU8 107 aa3.67□□□□□ -1.82
USH2A-201ENST00000307340 OPN4Q9UHM6 478 aa3.67□□□□□ -1.82
USH2A-201ENST00000307340 SVILO95425 2214 aa3.67□□□□□ -1.82
USH2A-201ENST00000307340 FAM149AA5PLN7 773 aa3.67□□□□□ -1.82
USH2A-201ENST00000307340 EIF4EP06730 217 aaKnown RBP3.67□□□□□ -1.82
USH2A-201ENST00000307340 CBLP22681 906 aa3.67□□□□□ -1.82
USH2A-201ENST00000307340 CAV2P51636 162 aa3.67□□□□□ -1.82
USH2A-201ENST00000307340 APOOLQ6UXV4 268 aa3.67□□□□□ -1.82
USH2A-201ENST00000307340 GDPD3Q7L5L3 318 aa3.67□□□□□ -1.82
USH2A-201ENST00000307340 BOLLQ8N9W6 283 aaKnown RBP3.67□□□□□ -1.82
USH2A-201ENST00000307340 SPNS1Q9H2V7 528 aa3.67□□□□□ -1.82
USH2A-201ENST00000307340 NCOR1O75376 2440 aa3.67□□□□□ -1.82
USH2A-201ENST00000307340 STK17BO94768 372 aa3.67□□□□□ -1.82
USH2A-201ENST00000307340 TOXO94900 526 aa3.67□□□□□ -1.82
USH2A-201ENST00000307340 SLC10A2Q12908 348 aaPredicted RBP3.67□□□□□ -1.82
USH2A-201ENST00000307340 DESI1Q6ICB0 168 aa3.67□□□□□ -1.82
USH2A-201ENST00000307340 FAM180BQ6P0A1 224 aa3.67□□□□□ -1.82
USH2A-201ENST00000307340 CRTC1Q6UUV9 634 aa3.67□□□□□ -1.82
USH2A-201ENST00000307340 DLEU7Q6UYE1 221 aa3.67□□□□□ -1.82
USH2A-201ENST00000307340 ESPNLQ6ZVH7 1005 aa3.67□□□□□ -1.82
USH2A-201ENST00000307340 ZFP41Q8N8Y5 198 aa3.67□□□□□ -1.82
USH2A-201ENST00000307340 TMEM104Q8NE00 496 aa3.67□□□□□ -1.82
USH2A-201ENST00000307340 IL22RA2Q969J5 263 aa3.67□□□□□ -1.82
USH2A-201ENST00000307340 APOBEC3DQ96AK3 386 aaPredicted RBP3.67□□□□□ -1.82
USH2A-201ENST00000307340 ZNF778Q96MU6 729 aa3.67□□□□□ -1.82
USH2A-201ENST00000307340 OR6C3Q9NZP0 311 aa3.67□□□□□ -1.82
USH2A-201ENST00000307340 CACNA1EQ15878 2313 aa3.67□□□□□ -1.82
USH2A-201ENST00000307340 RPP14O95059 124 aaKnown RBP3.67□□□□□ -1.82
USH2A-201ENST00000307340 APOA2P02652 100 aa3.67□□□□□ -1.82
USH2A-201ENST00000307340 ACAA1P09110 424 aaPredicted RBP3.67□□□□□ -1.82
USH2A-201ENST00000307340 PIRTP0C851 137 aa3.67□□□□□ -1.82
USH2A-201ENST00000307340 SLC6A1P30531 599 aa3.67□□□□□ -1.82
USH2A-201ENST00000307340 SLC11A1P49279 550 aa3.67□□□□□ -1.82
USH2A-201ENST00000307340 SLC39A5Q6ZMH5 540 aa3.67□□□□□ -1.82
USH2A-201ENST00000307340 FOXRED2Q8IWF2 684 aa3.67□□□□□ -1.82
USH2A-201ENST00000307340 AKR7LQ8NHP1 331 aa3.67□□□□□ -1.82
USH2A-201ENST00000307340 CDCP1Q9H5V8 836 aa3.67□□□□□ -1.82
USH2A-201ENST00000307340 GSKIPQ9P0R6 139 aa3.67□□□□□ -1.82
USH2A-201ENST00000307340 EBF1Q9UH73 591 aa3.67□□□□□ -1.82
USH2A-201ENST00000307340 MYO7AQ13402 2215 aa3.67□□□□□ -1.82
USH2A-201ENST00000307340 TMED7-TICAM2A0A0A6YYA0 188 aa3.67□□□□□ -1.82
USH2A-201ENST00000307340 CLN5O75503 358 aa3.67□□□□□ -1.82
USH2A-201ENST00000307340 ITGA3P26006 1051 aa3.67□□□□□ -1.82
USH2A-201ENST00000307340 HOXD9P28356 352 aaPredicted RBP3.67□□□□□ -1.82
USH2A-201ENST00000307340 CEACAM3P40198 252 aa3.67□□□□□ -1.82
USH2A-201ENST00000307340 TMEM107Q6UX40 140 aa3.67□□□□□ -1.82
USH2A-201ENST00000307340 APOOQ9BUR5 198 aa3.67□□□□□ -1.82
USH2A-201ENST00000307340 NMNAT2Q9BZQ4 307 aa3.67□□□□□ -1.82
USH2A-201ENST00000307340 PPIEQ9UNP9 301 aaKnown RBP3.67□□□□□ -1.82
USH2A-201ENST00000307340 ATG2BQ96BY7 2078 aa3.67□□□□□ -1.82
USH2A-201ENST00000307340 A0A0U1RQV5 110 aa3.67□□□□□ -1.82
USH2A-201ENST00000307340 TMEM238LA0A1B0GVL6 79 aa3.67□□□□□ -1.82
USH2A-201ENST00000307340 A6NJY4 79 aa3.67□□□□□ -1.82
USH2A-201ENST00000307340 CTDSP2O14595 271 aa3.67□□□□□ -1.82
USH2A-201ENST00000307340 FUT1P19526 365 aa3.67□□□□□ -1.82
USH2A-201ENST00000307340 SGCAQ16586 387 aa3.67□□□□□ -1.82
USH2A-201ENST00000307340 FGFBP2Q9BYJ0 223 aa3.67□□□□□ -1.82
USH2A-201ENST00000307340 SLC17A4Q9Y2C5 497 aa3.67□□□□□ -1.82
USH2A-201ENST00000307340 A0A0B4J2A0 478 aa3.67□□□□□ -1.82
USH2A-201ENST00000307340 MDFIC2A0A1B0GVS7 189 aa3.67□□□□□ -1.82
USH2A-201ENST00000307340 PTGESO14684 152 aa3.67□□□□□ -1.82
USH2A-201ENST00000307340 DEGS1O15121 323 aa3.67□□□□□ -1.82
USH2A-201ENST00000307340 PRKRAO75569 313 aaKnown RBP3.67□□□□□ -1.82
USH2A-201ENST00000307340 CD27P26842 260 aa3.67□□□□□ -1.82
USH2A-201ENST00000307340 EPHA8P29322 1005 aaPredicted RBP3.67□□□□□ -1.82
USH2A-201ENST00000307340 ZNF343Q6P1L6 599 aa3.67□□□□□ -1.82
USH2A-201ENST00000307340 TEX261Q6UWH6 196 aa3.67□□□□□ -1.82
USH2A-201ENST00000307340 SPACA9Q96E40 222 aaPredicted RBP3.67□□□□□ -1.82
USH2A-201ENST00000307340 INPP5KQ9BT40 448 aa3.67□□□□□ -1.82
USH2A-201ENST00000307340 LHX3Q9UBR4 397 aa3.67□□□□□ -1.82
USH2A-201ENST00000307340 SHPKQ9UHJ6 478 aa3.67□□□□□ -1.82
USH2A-201ENST00000307340 U3KQ87 197 aa3.67□□□□□ -1.82
USH2A-201ENST00000307340 HEPACAM2A8MVW5 462 aa3.67□□□□□ -1.82
USH2A-201ENST00000307340 SLC17A2O00624 439 aa3.67□□□□□ -1.82
USH2A-201ENST00000307340 KLF8O95600 359 aaPredicted RBP3.67□□□□□ -1.82
USH2A-201ENST00000307340 GAPDHP04406 335 aaKnown RBP3.67□□□□□ -1.82
USH2A-201ENST00000307340 H2AFB1P0C5Y9 115 aa3.67□□□□□ -1.82
USH2A-201ENST00000307340 VDAC1P21796 283 aa3.67□□□□□ -1.82
USH2A-201ENST00000307340 AZGP1P25311 298 aaKnown RBP3.67□□□□□ -1.82
USH2A-201ENST00000307340 RPL29P47914 159 aaKnown RBP3.67□□□□□ -1.82
USH2A-201ENST00000307340 ERFP50548 548 aa3.67□□□□□ -1.82
USH2A-201ENST00000307340 CDK5R1Q15078 307 aa3.67□□□□□ -1.82
USH2A-201ENST00000307340 Q7L0L9 218 aa3.67□□□□□ -1.82
USH2A-201ENST00000307340 IQCF2Q8IXL9 164 aa3.67□□□□□ -1.82
USH2A-201ENST00000307340 ZNF668Q96K58 619 aaPredicted RBP3.67□□□□□ -1.82
Retrieved 100 of 20,778 RNA–protein pairs in 33.9 ms