RNA–Protein interactions for RNA: ENST00000297979.9

C9orf3-202, Transcript of chromosome 9 open reading frame 3, humanhuman

TSL 1 (best) BASIC

Gene C9orf3, Length 2,820 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
C9orf3-202ENST00000297979 OR2V1Q8NHB1 315 aa12.66□□□□□ -0.38
C9orf3-202ENST00000297979 ZNF385AQ96PM9 386 aaKnown RBP12.66□□□□□ -0.38
C9orf3-202ENST00000297979 SMAD5Q99717 465 aaKnown RBP12.66□□□□□ -0.38
C9orf3-202ENST00000297979 TTTY12Q9BZ98 90 aa12.66□□□□□ -0.38
C9orf3-202ENST00000297979 MED13Q9UHV7 2174 aa12.66□□□□□ -0.38
C9orf3-202ENST00000297979 TRBV5-5A0A0J9YX44 114 aa12.66□□□□□ -0.38
C9orf3-202ENST00000297979 ISPDA4D126 451 aa12.66□□□□□ -0.38
C9orf3-202ENST00000297979 PIN1P1O15428 100 aa12.66□□□□□ -0.38
C9orf3-202ENST00000297979 NME2P1O60361 137 aa12.66□□□□□ -0.38
C9orf3-202ENST00000297979 HPGDSO60760 199 aa12.66□□□□□ -0.38
C9orf3-202ENST00000297979 SP1P08047 785 aa12.66□□□□□ -0.38
C9orf3-202ENST00000297979 PRKAR1AP10644 381 aa12.66□□□□□ -0.38
C9orf3-202ENST00000297979 NME2P22392 152 aa12.66□□□□□ -0.38
C9orf3-202ENST00000297979 CSNK1A1P48729 337 aa12.66□□□□□ -0.38
C9orf3-202ENST00000297979 SUCLG1P53597 346 aaKnown RBP12.66□□□□□ -0.38
C9orf3-202ENST00000297979 SRSF6Q13247 344 aaKnown RBP12.66□□□□□ -0.38
C9orf3-202ENST00000297979 KRBOX4Q5JUW0 171 aa12.66□□□□□ -0.38
C9orf3-202ENST00000297979 CDH26Q8IXH8 852 aa12.66□□□□□ -0.38
C9orf3-202ENST00000297979 OR2M2Q96R28 347 aa12.66□□□□□ -0.38
C9orf3-202ENST00000297979 SDHCQ99643 169 aaPredicted RBP12.66□□□□□ -0.38
C9orf3-202ENST00000297979 SEC61A2Q9H9S3 476 aa12.66□□□□□ -0.38
C9orf3-202ENST00000297979 GLTPQ9NZD2 209 aa12.66□□□□□ -0.38
C9orf3-202ENST00000297979 UGT2A1Q9Y4X1 527 aa12.66□□□□□ -0.38
C9orf3-202ENST00000297979 NKX2-8O15522 239 aa12.65□□□□□ -0.38
C9orf3-202ENST00000297979 OCM2P0CE71 109 aa12.65□□□□□ -0.38
C9orf3-202ENST00000297979 MFAP5Q13361 173 aa12.65□□□□□ -0.38
C9orf3-202ENST00000297979 ZNF79Q15937 498 aa12.65□□□□□ -0.38
C9orf3-202ENST00000297979 STEAP3Q658P3 488 aa12.65□□□□□ -0.38
C9orf3-202ENST00000297979 SLC25A25Q6KCM7 469 aa12.65□□□□□ -0.38
C9orf3-202ENST00000297979 FAM131AQ6UXB0 335 aa12.65□□□□□ -0.38
C9orf3-202ENST00000297979 OR10D3Q8NH80 312 aa12.65□□□□□ -0.38
C9orf3-202ENST00000297979 CYB5R1Q9UHQ9 305 aa12.65□□□□□ -0.38
C9orf3-202ENST00000297979 ADAM30Q9UKF2 790 aa12.65□□□□□ -0.38
C9orf3-202ENST00000297979 FABP12A6NFH5 140 aa12.65□□□□□ -0.38
C9orf3-202ENST00000297979 CXCL13O43927 109 aa12.65□□□□□ -0.38
C9orf3-202ENST00000297979 SRMP19623 302 aa12.65□□□□□ -0.38
C9orf3-202ENST00000297979 THBS2P35442 1172 aa12.65□□□□□ -0.38
C9orf3-202ENST00000297979 EIF1AXP47813 144 aaKnown RBP12.65□□□□□ -0.38
C9orf3-202ENST00000297979 MFGE8Q08431 387 aaPredicted RBP12.65□□□□□ -0.38
C9orf3-202ENST00000297979 LRFN4Q6PJG9 635 aa12.65□□□□□ -0.38
C9orf3-202ENST00000297979 DEGS2Q6QHC5 323 aa12.65□□□□□ -0.38
C9orf3-202ENST00000297979 GALNTL5Q7Z4T8 443 aa12.65□□□□□ -0.38
C9orf3-202ENST00000297979 CCDC36Q8IYA8 594 aa12.65□□□□□ -0.38
C9orf3-202ENST00000297979 OR6N1Q8NGY5 312 aa12.65□□□□□ -0.38
C9orf3-202ENST00000297979 GPR148Q8TDV2 347 aa12.65□□□□□ -0.38
C9orf3-202ENST00000297979 TMEM54Q969K7 222 aa12.65□□□□□ -0.38
C9orf3-202ENST00000297979 DLL3Q9NYJ7 618 aa12.65□□□□□ -0.38
C9orf3-202ENST00000297979 POLR1DQ9Y2S0 133 aa12.65□□□□□ -0.38
C9orf3-202ENST00000297979 FAM166BA8MTA8 275 aa12.64□□□□□ -0.39
C9orf3-202ENST00000297979 SLC19A2O60779 497 aa12.64□□□□□ -0.39
C9orf3-202ENST00000297979 PNPP00491 289 aa12.64□□□□□ -0.39
C9orf3-202ENST00000297979 CDAP32320 146 aa12.64□□□□□ -0.39
C9orf3-202ENST00000297979 MAGEB1P43366 347 aa12.64□□□□□ -0.39
C9orf3-202ENST00000297979 PLGLB1Q02325 96 aa12.64□□□□□ -0.39
C9orf3-202ENST00000297979 TRIM16LQ309B1 348 aa12.64□□□□□ -0.39
C9orf3-202ENST00000297979 SLC25A35Q3KQZ1 300 aa12.64□□□□□ -0.39
C9orf3-202ENST00000297979 SYT9Q86SS6 491 aa12.64□□□□□ -0.39
C9orf3-202ENST00000297979 TMEM123Q8N131 208 aa12.64□□□□□ -0.39
C9orf3-202ENST00000297979 RNF133Q8WVZ7 376 aa12.64□□□□□ -0.39
C9orf3-202ENST00000297979 PNPLA2Q96AD5 504 aa12.64□□□□□ -0.39
C9orf3-202ENST00000297979 SRRQ9GZT4 340 aa12.64□□□□□ -0.39
C9orf3-202ENST00000297979 C12orf49Q9H741 205 aa12.64□□□□□ -0.39
C9orf3-202ENST00000297979 EMC7Q9NPA0 242 aa12.64□□□□□ -0.39
C9orf3-202ENST00000297979 B3GAT2Q9NPZ5 323 aa12.64□□□□□ -0.39
C9orf3-202ENST00000297979 R4GMQ9 66 aa12.64□□□□□ -0.39
C9orf3-202ENST00000297979 ATP6V1G2-DDX39BF2Z307 99 aa12.64□□□□□ -0.39
C9orf3-202ENST00000297979 KLRC4-KLRK1H3BQV0 150 aa12.64□□□□□ -0.39
C9orf3-202ENST00000297979 GPR171O14626 319 aa12.64□□□□□ -0.39
C9orf3-202ENST00000297979 CELA3AP09093 270 aa12.64□□□□□ -0.39
C9orf3-202ENST00000297979 CD46P15529 392 aa12.64□□□□□ -0.39
C9orf3-202ENST00000297979 MAGEA5P43359 124 aa12.64□□□□□ -0.39
C9orf3-202ENST00000297979 MEOX1P50221 254 aa12.64□□□□□ -0.39
C9orf3-202ENST00000297979 CDC20Q12834 499 aa12.64□□□□□ -0.39
C9orf3-202ENST00000297979 OXA1LQ15070 435 aa12.64□□□□□ -0.39
C9orf3-202ENST00000297979 ODF4Q2M2E3 257 aa12.64□□□□□ -0.39
C9orf3-202ENST00000297979 PDSS1Q5T2R2 415 aa12.64□□□□□ -0.39
C9orf3-202ENST00000297979 CATSPERDQ86XM0 798 aa12.64□□□□□ -0.39
C9orf3-202ENST00000297979 ZIC4Q8N9L1 334 aa12.64□□□□□ -0.39
C9orf3-202ENST00000297979 MINDY2Q8NBR6 621 aa12.64□□□□□ -0.39
C9orf3-202ENST00000297979 C1orf198Q9H425 327 aa12.64□□□□□ -0.39
C9orf3-202ENST00000297979 TIGARQ9NQ88 270 aa12.64□□□□□ -0.39
C9orf3-202ENST00000297979 FBXL3Q9UKT7 428 aa12.64□□□□□ -0.39
C9orf3-202ENST00000297979 PROB1E7EW31 1015 aa12.63□□□□□ -0.39
C9orf3-202ENST00000297979 PDCD5O14737 125 aa12.63□□□□□ -0.39
C9orf3-202ENST00000297979 SSX5O60225 188 aa12.63□□□□□ -0.39
C9orf3-202ENST00000297979 SRSF10O75494 262 aaKnown RBP12.63□□□□□ -0.39
C9orf3-202ENST00000297979 H2BFMP0C1H6 154 aa12.63□□□□□ -0.39
C9orf3-202ENST00000297979 OCMP0CE72 109 aaPredicted RBP12.63□□□□□ -0.39
C9orf3-202ENST00000297979 SOX2P48431 317 aa12.63□□□□□ -0.39
C9orf3-202ENST00000297979 CLDN15P56746 228 aa12.63□□□□□ -0.39
C9orf3-202ENST00000297979 KCNMB1Q16558 191 aa12.63□□□□□ -0.39
C9orf3-202ENST00000297979 ABLIM2Q6H8Q1 611 aa12.63□□□□□ -0.39
C9orf3-202ENST00000297979 CNIH2Q6PI25 160 aa12.63□□□□□ -0.39
C9orf3-202ENST00000297979 XKRXQ6PP77 449 aa12.63□□□□□ -0.39
C9orf3-202ENST00000297979 ASCL5Q7RTU5 278 aa12.63□□□□□ -0.39
C9orf3-202ENST00000297979 RDH10Q8IZV5 341 aa12.63□□□□□ -0.39
C9orf3-202ENST00000297979 TMEM251Q8N6I4 163 aa12.63□□□□□ -0.39
C9orf3-202ENST00000297979 THRSPQ92748 146 aa12.63□□□□□ -0.39
C9orf3-202ENST00000297979 CPNE4Q96A23 557 aaPredicted RBP12.63□□□□□ -0.39
C9orf3-202ENST00000297979 ORAI1Q96D31 301 aa12.63□□□□□ -0.39
Retrieved 100 of 20,778 RNA–protein pairs in 39.4 ms