RNA–Protein interactions for RNA: ENST00000296581.10

LSM6-201, Transcript of LSM6 homolog, U6 small nuclear RNA and mRNA degradation associated, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene LSM6, Length 2,259 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LSM6-201ENST00000296581 PDCD1LG2Q9BQ51 273 aa13.79□□□□□ -0.2
LSM6-201ENST00000296581 PPIL3Q9H2H8 161 aaKnown RBP13.79□□□□□ -0.2
LSM6-201ENST00000296581 SLC6A15Q9H2J7 730 aa13.79□□□□□ -0.2
LSM6-201ENST00000296581 ACKR4Q9NPB9 350 aa13.79□□□□□ -0.2
LSM6-201ENST00000296581 GLTPQ9NZD2 209 aa13.79□□□□□ -0.2
LSM6-201ENST00000296581 PLEKHB1Q9UF11 243 aaPredicted RBP13.79□□□□□ -0.2
LSM6-201ENST00000296581 HMX3A6NHT5 357 aa13.79□□□□□ -0.2
LSM6-201ENST00000296581 CASKO14936 926 aa13.79□□□□□ -0.2
LSM6-201ENST00000296581 ZNF254O75437 659 aa13.79□□□□□ -0.2
LSM6-201ENST00000296581 GATBO75879 557 aaKnown RBP13.79□□□□□ -0.2
LSM6-201ENST00000296581 QDPRP09417 244 aa13.79□□□□□ -0.2
LSM6-201ENST00000296581 ZNF708P17019 499 aa13.79□□□□□ -0.2
LSM6-201ENST00000296581 CLDN18P56856 261 aa13.79□□□□□ -0.2
LSM6-201ENST00000296581 KCNMB1Q16558 191 aa13.79□□□□□ -0.2
LSM6-201ENST00000296581 DEFB109BQ30KR1 87 aa13.79□□□□□ -0.2
LSM6-201ENST00000296581 LRRN1Q6UXK5 716 aa13.79□□□□□ -0.2
LSM6-201ENST00000296581 UNQ9370/PRO34162Q6UXP9 181 aa13.79□□□□□ -0.2
LSM6-201ENST00000296581 CEP19Q96LK0 163 aa13.79□□□□□ -0.2
LSM6-201ENST00000296581 KCNS3Q9BQ31 491 aa13.79□□□□□ -0.2
LSM6-201ENST00000296581 ELOVL3Q9HB03 270 aa13.79□□□□□ -0.2
LSM6-201ENST00000296581 SMURF1Q9HCE7 757 aa13.79□□□□□ -0.2
LSM6-201ENST00000296581 KLK13Q9UKR3 277 aa13.79□□□□□ -0.2
LSM6-201ENST00000296581 ZNF281Q9Y2X9 895 aa13.79□□□□□ -0.2
LSM6-201ENST00000296581 EFSO43281 561 aa13.78□□□□□ -0.2
LSM6-201ENST00000296581 ZFPL1O95159 310 aa13.78□□□□□ -0.2
LSM6-201ENST00000296581 PDGFAP04085 211 aa13.78□□□□□ -0.2
LSM6-201ENST00000296581 CSNK1A1P48729 337 aa13.78□□□□□ -0.2
LSM6-201ENST00000296581 ZNF45Q02386 682 aa13.78□□□□□ -0.2
LSM6-201ENST00000296581 ZMAT1Q5H9K5 638 aa13.78□□□□□ -0.2
LSM6-201ENST00000296581 C10orf128Q5T292 105 aa13.78□□□□□ -0.2
LSM6-201ENST00000296581 ZNF767PQ75MW2 155 aa13.78□□□□□ -0.2
LSM6-201ENST00000296581 PARP16Q8N5Y8 322 aa13.78□□□□□ -0.2
LSM6-201ENST00000296581 OR4M1Q8NGD0 313 aa13.78□□□□□ -0.2
LSM6-201ENST00000296581 OR2G2Q8NGZ5 317 aa13.78□□□□□ -0.2
LSM6-201ENST00000296581 ZFAND1Q8TCF1 268 aa13.78□□□□□ -0.2
LSM6-201ENST00000296581 RNF128Q8TEB7 428 aa13.78□□□□□ -0.2
LSM6-201ENST00000296581 INTS12Q96CB8 462 aaKnown RBP13.78□□□□□ -0.2
LSM6-201ENST00000296581 FRRS1LQ9P0K9 344 aa13.78□□□□□ -0.2
LSM6-201ENST00000296581 RCE1Q9Y256 329 aa13.78□□□□□ -0.2
LSM6-201ENST00000296581 FLVCR1Q9Y5Y0 555 aa13.78□□□□□ -0.2
LSM6-201ENST00000296581 DCDC2BA2VCK2 349 aa13.78□□□□□ -0.2
LSM6-201ENST00000296581 GFRA3O60609 400 aa13.78□□□□□ -0.2
LSM6-201ENST00000296581 CYTIPO60759 359 aa13.78□□□□□ -0.2
LSM6-201ENST00000296581 WNT11O96014 354 aa13.78□□□□□ -0.2
LSM6-201ENST00000296581 FAM27D1Q5T7N8 215 aa13.78□□□□□ -0.2
LSM6-201ENST00000296581 KRT77Q7Z794 578 aa13.78□□□□□ -0.2
LSM6-201ENST00000296581 OR10H5Q8NGA6 315 aa13.78□□□□□ -0.2
LSM6-201ENST00000296581 ROBO4Q8WZ75 1007 aa13.78□□□□□ -0.2
LSM6-201ENST00000296581 RGP1Q92546 391 aaPredicted RBP13.78□□□□□ -0.2
LSM6-201ENST00000296581 PHYHIPQ92561 330 aa13.78□□□□□ -0.2
LSM6-201ENST00000296581 RANGRFQ9HD47 186 aaPredicted RBP13.78□□□□□ -0.2
LSM6-201ENST00000296581 CYB5R1Q9UHQ9 305 aa13.78□□□□□ -0.2
LSM6-201ENST00000296581 FOXD3Q9UJU5 478 aaPredicted RBP13.78□□□□□ -0.2
LSM6-201ENST00000296581 KCNMB2Q9Y691 235 aa13.78□□□□□ -0.2
LSM6-201ENST00000296581 CACNA1CQ13936 2221 aa13.77□□□□□ -0.2
LSM6-201ENST00000296581 A0A1W2PPL8 197 aa13.77□□□□□ -0.21
LSM6-201ENST00000296581 OR4C45A6NMZ5 311 aa13.77□□□□□ -0.21
LSM6-201ENST00000296581 UCHL1P09936 223 aa13.77□□□□□ -0.21
LSM6-201ENST00000296581 DEGS2Q6QHC5 323 aa13.77□□□□□ -0.21
LSM6-201ENST00000296581 FOXL2NBQ6ZUU3 175 aa13.77□□□□□ -0.21
LSM6-201ENST00000296581 DCXRQ7Z4W1 244 aa13.77□□□□□ -0.21
LSM6-201ENST00000296581 TPRA1Q86W33 373 aa13.77□□□□□ -0.21
LSM6-201ENST00000296581 LINC00346Q8IVM7 164 aa13.77□□□□□ -0.21
LSM6-201ENST00000296581 OR6N1Q8NGY5 312 aa13.77□□□□□ -0.21
LSM6-201ENST00000296581 PNPLA2Q96AD5 504 aa13.77□□□□□ -0.21
LSM6-201ENST00000296581 ZNF845Q96IR2 970 aaPredicted RBP13.77□□□□□ -0.21
LSM6-201ENST00000296581 DCBLD2Q96PD2 775 aa13.77□□□□□ -0.21
LSM6-201ENST00000296581 FYTTD1Q96QD9 318 aaKnown RBP13.77□□□□□ -0.21
LSM6-201ENST00000296581 CSAG2Q9Y5P2 127 aa13.77□□□□□ -0.21
LSM6-201ENST00000296581 ACOT7O00154 380 aa13.76□□□□□ -0.21
LSM6-201ENST00000296581 ETV6P41212 452 aa13.76□□□□□ -0.21
LSM6-201ENST00000296581 SELENOPP49908 381 aa13.76□□□□□ -0.21
LSM6-201ENST00000296581 CCR9P51686 369 aa13.76□□□□□ -0.21
LSM6-201ENST00000296581 SLC10A1Q14973 349 aa13.76□□□□□ -0.21
LSM6-201ENST00000296581 IGSF11Q5DX21 431 aa13.76□□□□□ -0.21
LSM6-201ENST00000296581 PHYHD1Q5SRE7 291 aa13.76□□□□□ -0.21
LSM6-201ENST00000296581 C20orf196Q8IYI0 205 aa13.76□□□□□ -0.21
LSM6-201ENST00000296581 LINC00518Q8N0U6 118 aa13.76□□□□□ -0.21
LSM6-201ENST00000296581 MEIOBQ8N635 442 aa13.76□□□□□ -0.21
LSM6-201ENST00000296581 OR4M2Q8NGB6 313 aa13.76□□□□□ -0.21
LSM6-201ENST00000296581 OR5AK2Q8NH90 309 aa13.76□□□□□ -0.21
LSM6-201ENST00000296581 RNF133Q8WVZ7 376 aa13.76□□□□□ -0.21
LSM6-201ENST00000296581 C4orf45Q96LM5 186 aa13.76□□□□□ -0.21
LSM6-201ENST00000296581 LRP12Q9Y561 859 aa13.76□□□□□ -0.21
LSM6-201ENST00000296581 TRAV1-2A0A0B4J238 106 aa13.76□□□□□ -0.21
LSM6-201ENST00000296581 SMIM30A4D0T7 59 aa13.76□□□□□ -0.21
LSM6-201ENST00000296581 ACTL6AO96019 429 aa13.76□□□□□ -0.21
LSM6-201ENST00000296581 MYL9P24844 172 aa13.76□□□□□ -0.21
LSM6-201ENST00000296581 RIDAP52758 137 aaKnown RBP13.76□□□□□ -0.21
LSM6-201ENST00000296581 RASGEF1BQ0VAM2 473 aa13.76□□□□□ -0.21
LSM6-201ENST00000296581 FCRLAQ7L513 359 aa13.76□□□□□ -0.21
LSM6-201ENST00000296581 CCDC190Q86UF4 302 aa13.76□□□□□ -0.21
LSM6-201ENST00000296581 PRSS35Q8N3Z0 413 aa13.76□□□□□ -0.21
LSM6-201ENST00000296581 AP3S1Q92572 193 aa13.76□□□□□ -0.21
LSM6-201ENST00000296581 MARC2Q969Z3 335 aa13.76□□□□□ -0.21
LSM6-201ENST00000296581 ZDHHC11Q9H8X9 412 aa13.76□□□□□ -0.21
LSM6-201ENST00000296581 SEC61A2Q9H9S3 476 aa13.76□□□□□ -0.21
LSM6-201ENST00000296581 A0A087WV48 116 aa13.75□□□□□ -0.21
LSM6-201ENST00000296581 A0A1B0GTH9 108 aa13.75□□□□□ -0.21
LSM6-201ENST00000296581 TMEM212A6NML5 194 aa13.75□□□□□ -0.21
Retrieved 100 of 20,778 RNA–protein pairs in 9.1 ms