RNA–Protein interactions for RNA: ENST00000252444.9

LDLR-201, Transcript of low density lipoprotein receptor, humanhuman

APPRIS ALT2 TSL 1 (best)

Gene LDLR, Length 5,337 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-201ENST00000252444 CTHRC1Q96CG8 243 aa12.28□□□□□ -0.44
LDLR-201ENST00000252444 NUP210Q8TEM1 1887 aaPredicted RBP12.27□□□□□ -0.44
LDLR-201ENST00000252444 AIPO00170 330 aa12.27□□□□□ -0.44
LDLR-201ENST00000252444 SH2D1BO14796 132 aa12.27□□□□□ -0.44
LDLR-201ENST00000252444 TMIGD3P0DMS9 266 aaPredicted RBP12.27□□□□□ -0.44
LDLR-201ENST00000252444 CHRNB4P30926 498 aa12.27□□□□□ -0.44
LDLR-201ENST00000252444 ZNF92Q03936 586 aa12.27□□□□□ -0.44
LDLR-201ENST00000252444 OR2G6Q5TZ20 316 aa12.27□□□□□ -0.44
LDLR-201ENST00000252444 ZNF511Q8NB15 262 aa12.27□□□□□ -0.44
LDLR-201ENST00000252444 OR4C3Q8NH37 302 aa12.27□□□□□ -0.44
LDLR-201ENST00000252444 SCGB1C1Q8TD33 95 aa12.27□□□□□ -0.44
LDLR-201ENST00000252444 FAM3DQ96BQ1 224 aa12.27□□□□□ -0.44
LDLR-201ENST00000252444 KTI12Q96EK9 354 aaPredicted RBP12.27□□□□□ -0.44
LDLR-201ENST00000252444 GPX7Q96SL4 187 aaPredicted RBP12.27□□□□□ -0.44
LDLR-201ENST00000252444 FN3KRPQ9HA64 309 aa12.27□□□□□ -0.44
LDLR-201ENST00000252444 DSPPQ9NZW4 1301 aa12.27□□□□□ -0.44
LDLR-201ENST00000252444 LTBP2Q14767 1821 aa12.27□□□□□ -0.44
LDLR-201ENST00000252444 CSN2P05814 226 aa12.27□□□□□ -0.45
LDLR-201ENST00000252444 NAT2P11245 290 aa12.27□□□□□ -0.45
LDLR-201ENST00000252444 MDH2P40926 338 aaKnown RBP12.27□□□□□ -0.45
LDLR-201ENST00000252444 SPOCK1Q08629 439 aa12.27□□□□□ -0.45
LDLR-201ENST00000252444 RBMS2Q15434 407 aaKnown RBP12.27□□□□□ -0.45
LDLR-201ENST00000252444 TMEM99Q8N816 258 aa12.27□□□□□ -0.45
LDLR-201ENST00000252444 NICN1Q9BSH3 213 aa12.27□□□□□ -0.45
LDLR-201ENST00000252444 NECAP2Q9NVZ3 263 aa12.27□□□□□ -0.45
LDLR-201ENST00000252444 MED6O75586 246 aa12.27□□□□□ -0.45
LDLR-201ENST00000252444 ATF1P18846 271 aa12.27□□□□□ -0.45
LDLR-201ENST00000252444 IL2RGP31785 369 aa12.27□□□□□ -0.45
LDLR-201ENST00000252444 DCTDP32321 178 aa12.27□□□□□ -0.45
LDLR-201ENST00000252444 FAPQ12884 760 aa12.27□□□□□ -0.45
LDLR-201ENST00000252444 RAB31Q13636 194 aa12.27□□□□□ -0.45
LDLR-201ENST00000252444 WIPI1Q5MNZ9 446 aaPredicted RBP12.27□□□□□ -0.45
LDLR-201ENST00000252444 TMEM105Q8N8V8 129 aa12.27□□□□□ -0.45
LDLR-201ENST00000252444 ZNF610Q8N9Z0 462 aa12.27□□□□□ -0.45
LDLR-201ENST00000252444 DNAJA3Q96EY1 480 aa12.27□□□□□ -0.45
LDLR-201ENST00000252444 CHST6Q9GZX3 395 aa12.27□□□□□ -0.45
LDLR-201ENST00000252444 C12orf49Q9H741 205 aa12.27□□□□□ -0.45
LDLR-201ENST00000252444 TRGV8A0A0C4DH27 118 aa12.27□□□□□ -0.45
LDLR-201ENST00000252444 NXPH2O95156 264 aa12.27□□□□□ -0.45
LDLR-201ENST00000252444 IFNA1P01562 189 aa12.27□□□□□ -0.45
LDLR-201ENST00000252444 GSTP1P09211 210 aaKnown RBP12.27□□□□□ -0.45
LDLR-201ENST00000252444 PRSS35Q8N3Z0 413 aa12.27□□□□□ -0.45
LDLR-201ENST00000252444 OR13C9Q8NGT0 318 aa12.27□□□□□ -0.45
LDLR-201ENST00000252444 TXNDC12O95881 172 aa12.26□□□□□ -0.45
LDLR-201ENST00000252444 BGLAPP02818 100 aa12.26□□□□□ -0.45
LDLR-201ENST00000252444 FHL5Q5TD97 284 aa12.26□□□□□ -0.45
LDLR-201ENST00000252444 FAM199XQ6PEV8 388 aaPredicted RBP12.26□□□□□ -0.45
LDLR-201ENST00000252444 RNF32Q9H0A6 362 aa12.26□□□□□ -0.45
LDLR-201ENST00000252444 GPR27Q9NS67 375 aa12.26□□□□□ -0.45
LDLR-201ENST00000252444 SEMA5BQ9P283 1151 aa12.26□□□□□ -0.45
LDLR-201ENST00000252444 ASH2LQ9UBL3 628 aa12.26□□□□□ -0.45
LDLR-201ENST00000252444 FOXD3Q9UJU5 478 aaPredicted RBP12.26□□□□□ -0.45
LDLR-201ENST00000252444 SLC22A5O76082 557 aa12.26□□□□□ -0.45
LDLR-201ENST00000252444 RAB6AP20340 208 aa12.26□□□□□ -0.45
LDLR-201ENST00000252444 FGF9P31371 208 aaPredicted RBP12.26□□□□□ -0.45
LDLR-201ENST00000252444 MFGE8Q08431 387 aaPredicted RBP12.26□□□□□ -0.45
LDLR-201ENST00000252444 ARSJQ5FYB0 599 aaPredicted RBP12.26□□□□□ -0.45
LDLR-201ENST00000252444 INO80CQ6PI98 192 aaPredicted RBP12.26□□□□□ -0.45
LDLR-201ENST00000252444 SULF2Q8IWU5 870 aa12.26□□□□□ -0.45
LDLR-201ENST00000252444 REEP6Q96HR9 211 aa12.26□□□□□ -0.45
LDLR-201ENST00000252444 SLC25A18Q9H1K4 315 aa12.26□□□□□ -0.45
LDLR-201ENST00000252444 VWA8A3KMH1 1905 aa12.26□□□□□ -0.45
LDLR-201ENST00000252444 SPAARA0A1B0GVQ0 90 aa12.26□□□□□ -0.45
LDLR-201ENST00000252444 A0A1W2PNV4 684 aa12.26□□□□□ -0.45
LDLR-201ENST00000252444 A0A1W2PPK0 400 aa12.26□□□□□ -0.45
LDLR-201ENST00000252444 J3QW42 95 aa12.26□□□□□ -0.45
LDLR-201ENST00000252444 OPN1LWP04000 364 aa12.26□□□□□ -0.45
LDLR-201ENST00000252444 SERPINA2P20848 420 aa12.26□□□□□ -0.45
LDLR-201ENST00000252444 PHC2Q8IXK0 858 aa12.26□□□□□ -0.45
LDLR-201ENST00000252444 NAXEQ8NCW5 288 aa12.26□□□□□ -0.45
LDLR-201ENST00000252444 TMEFF2Q9UIK5 374 aaPredicted RBP12.26□□□□□ -0.45
LDLR-201ENST00000252444 TBC1D24Q9ULP9 559 aa12.26□□□□□ -0.45
LDLR-201ENST00000252444 ATP23Q9Y6H3 246 aa12.26□□□□□ -0.45
LDLR-201ENST00000252444 ANKRD16Q6P6B7 361 aa12.26□□□□□ -0.45
LDLR-201ENST00000252444 Q6ZTK2 550 aa12.26□□□□□ -0.45
LDLR-201ENST00000252444 MEX3DQ86XN8 651 aaKnown RBP12.26□□□□□ -0.45
LDLR-201ENST00000252444 SLC6A13Q9NSD5 602 aa12.26□□□□□ -0.45
LDLR-201ENST00000252444 TET1Q8NFU7 2136 aa12.26□□□□□ -0.45
LDLR-201ENST00000252444 TMEM108Q6UXF1 575 aa12.25□□□□□ -0.45
LDLR-201ENST00000252444 ZNF695Q8IW36 515 aa12.25□□□□□ -0.45
LDLR-201ENST00000252444 OR56B4Q8NH76 319 aa12.25□□□□□ -0.45
LDLR-201ENST00000252444 FGGYQ96C11 551 aa12.25□□□□□ -0.45
LDLR-201ENST00000252444 MPC1Q9Y5U8 109 aa12.25□□□□□ -0.45
LDLR-201ENST00000252444 ANKRD61A6NGH8 418 aa12.25□□□□□ -0.45
LDLR-201ENST00000252444 TOR1AO14656 332 aa12.25□□□□□ -0.45
LDLR-201ENST00000252444 NRASP01111 189 aa12.25□□□□□ -0.45
LDLR-201ENST00000252444 SERPINE2P07093 398 aa12.25□□□□□ -0.45
LDLR-201ENST00000252444 CD1EP15812 388 aa12.25□□□□□ -0.45
LDLR-201ENST00000252444 S100A1P23297 94 aa12.25□□□□□ -0.45
LDLR-201ENST00000252444 SMIM21Q3B7S5 101 aa12.25□□□□□ -0.45
LDLR-201ENST00000252444 SLC22A6Q4U2R8 563 aa12.25□□□□□ -0.45
LDLR-201ENST00000252444 HYLS1Q96M11 299 aa12.25□□□□□ -0.45
LDLR-201ENST00000252444 DIRC2Q96SL1 478 aa12.25□□□□□ -0.45
LDLR-201ENST00000252444 SLC6A7Q99884 636 aa12.25□□□□□ -0.45
LDLR-201ENST00000252444 SLC25A31Q9H0C2 315 aa12.25□□□□□ -0.45
LDLR-201ENST00000252444 PPA2Q9H2U2 334 aa12.25□□□□□ -0.45
LDLR-201ENST00000252444 VSX1Q9NZR4 365 aaPredicted RBP12.25□□□□□ -0.45
LDLR-201ENST00000252444 CGGBP1Q9UFW8 167 aaPredicted RBP12.25□□□□□ -0.45
LDLR-201ENST00000252444 SLC22A13Q9Y226 551 aa12.25□□□□□ -0.45
LDLR-201ENST00000252444 OR5B21A6NL26 309 aa12.25□□□□□ -0.45
Retrieved 100 of 20,778 RNA–protein pairs in 40.3 ms