RNA–Protein interactions for RNA: ENST00000641603.1

SCN1A-220, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

BASIC

Gene SCN1A, Length 12,506 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-220ENST00000641603 FLVCR1Q9Y5Y0 555 aa4.28□□□□□ -1.72
SCN1A-220ENST00000641603 TBC1D3DA0A087WVF3 549 aa4.28□□□□□ -1.72
SCN1A-220ENST00000641603 A0A1B0GTW7 788 aa4.28□□□□□ -1.72
SCN1A-220ENST00000641603 TBC1D3LB9A6J9 549 aa4.28□□□□□ -1.72
SCN1A-220ENST00000641603 SLC17A3O00476 420 aa4.28□□□□□ -1.72
SCN1A-220ENST00000641603 TBC1D3HP0C7X1 549 aa4.28□□□□□ -1.72
SCN1A-220ENST00000641603 SLC9A3R2Q15599 337 aa4.28□□□□□ -1.72
SCN1A-220ENST00000641603 SYPL1Q16563 259 aa4.28□□□□□ -1.72
SCN1A-220ENST00000641603 TBC1D3CQ6IPX1 549 aa4.28□□□□□ -1.72
SCN1A-220ENST00000641603 TBC1D3Q8IZP1 549 aaPredicted RBP4.28□□□□□ -1.72
SCN1A-220ENST00000641603 ZNRF4Q8WWF5 429 aa4.28□□□□□ -1.72
SCN1A-220ENST00000641603 AKR1E2Q96JD6 320 aa4.28□□□□□ -1.72
SCN1A-220ENST00000641603 URGCP-MRPS24S4R325 110 aa4.28□□□□□ -1.72
SCN1A-220ENST00000641603 A0A1W2PPK0 400 aa4.28□□□□□ -1.72
SCN1A-220ENST00000641603 OR2A4O95047 310 aa4.28□□□□□ -1.72
SCN1A-220ENST00000641603 ENPP1P22413 925 aa4.28□□□□□ -1.72
SCN1A-220ENST00000641603 CD300CQ08708 224 aa4.28□□□□□ -1.72
SCN1A-220ENST00000641603 IKZF1Q13422 519 aa4.28□□□□□ -1.72
SCN1A-220ENST00000641603 PMS2P11Q13670 270 aa4.28□□□□□ -1.72
SCN1A-220ENST00000641603 OR2A2Q6IF42 318 aa4.28□□□□□ -1.72
SCN1A-220ENST00000641603 LCN10Q6JVE6 187 aa4.28□□□□□ -1.72
SCN1A-220ENST00000641603 BOLLQ8N9W6 283 aaKnown RBP4.28□□□□□ -1.72
SCN1A-220ENST00000641603 OR10P1Q8NGE3 313 aa4.28□□□□□ -1.72
SCN1A-220ENST00000641603 ARRDC2Q8TBH0 407 aa4.28□□□□□ -1.72
SCN1A-220ENST00000641603 DTD2Q96FN9 168 aa4.28□□□□□ -1.72
SCN1A-220ENST00000641603 OR2A7Q96R45 310 aa4.28□□□□□ -1.72
SCN1A-220ENST00000641603 GAL3ST4Q96RP7 486 aa4.28□□□□□ -1.72
SCN1A-220ENST00000641603 C2orf88Q9BSF0 95 aa4.28□□□□□ -1.72
SCN1A-220ENST00000641603 B3GALT1Q9Y5Z6 326 aa4.28□□□□□ -1.72
SCN1A-220ENST00000641603 HSD17B6O14756 317 aa4.28□□□□□ -1.72
SCN1A-220ENST00000641603 PLA2G10O15496 165 aa4.28□□□□□ -1.72
SCN1A-220ENST00000641603 NDUFA2O43678 99 aa4.28□□□□□ -1.72
SCN1A-220ENST00000641603 NME2P1O60361 137 aa4.28□□□□□ -1.72
SCN1A-220ENST00000641603 IGHA1P01876 353 aa4.28□□□□□ -1.72
SCN1A-220ENST00000641603 FCARP24071 287 aa4.28□□□□□ -1.72
SCN1A-220ENST00000641603 PRLHRP49683 370 aa4.28□□□□□ -1.72
SCN1A-220ENST00000641603 STARD6P59095 220 aa4.28□□□□□ -1.72
SCN1A-220ENST00000641603 LCN2P80188 198 aa4.28□□□□□ -1.72
SCN1A-220ENST00000641603 RTL10Q7L3V2 364 aa4.28□□□□□ -1.72
SCN1A-220ENST00000641603 DOK3Q7L591 496 aa4.28□□□□□ -1.72
SCN1A-220ENST00000641603 ABHD12BQ7Z5M8 362 aaPredicted RBP4.28□□□□□ -1.72
SCN1A-220ENST00000641603 OR5M1Q8NGP8 315 aa4.28□□□□□ -1.72
SCN1A-220ENST00000641603 MEGF10Q96KG7 1140 aa4.28□□□□□ -1.72
SCN1A-220ENST00000641603 NDUFAF3Q9BU61 184 aa4.28□□□□□ -1.72
SCN1A-220ENST00000641603 ABHD6Q9BV23 337 aa4.28□□□□□ -1.72
SCN1A-220ENST00000641603 SMIM3Q9BZL3 60 aa4.28□□□□□ -1.72
SCN1A-220ENST00000641603 SAP18O00422 153 aaKnown RBP4.28□□□□□ -1.73
SCN1A-220ENST00000641603 SMAD9O15198 467 aaKnown RBP4.28□□□□□ -1.73
SCN1A-220ENST00000641603 FZD2Q14332 565 aa4.28□□□□□ -1.73
SCN1A-220ENST00000641603 SUSD1Q6UWL2 747 aa4.28□□□□□ -1.73
SCN1A-220ENST00000641603 STAC2Q6ZMT1 411 aa4.28□□□□□ -1.73
SCN1A-220ENST00000641603 CMTM2Q8TAZ6 248 aa4.28□□□□□ -1.73
SCN1A-220ENST00000641603 LMLNQ96KR4 655 aa4.28□□□□□ -1.73
SCN1A-220ENST00000641603 LIN7CQ9NUP9 197 aaKnown RBP4.28□□□□□ -1.73
SCN1A-220ENST00000641603 TRBV9A0A0B4J1U6 114 aa4.27□□□□□ -1.73
SCN1A-220ENST00000641603 UBE2CO00762 179 aa4.27□□□□□ -1.73
SCN1A-220ENST00000641603 KLF8O95600 359 aaPredicted RBP4.27□□□□□ -1.73
SCN1A-220ENST00000641603 ZNF888P0CJ79 500 aaPredicted RBP4.27□□□□□ -1.73
SCN1A-220ENST00000641603 OR5B3Q8NH48 314 aa4.27□□□□□ -1.73
SCN1A-220ENST00000641603 DTD1Q8TEA8 209 aa4.27□□□□□ -1.73
SCN1A-220ENST00000641603 ASB5Q8WWX0 329 aa4.27□□□□□ -1.73
SCN1A-220ENST00000641603 DCDC2BA2VCK2 349 aa4.27□□□□□ -1.73
SCN1A-220ENST00000641603 VSTM5A8MXK1 200 aa4.27□□□□□ -1.73
SCN1A-220ENST00000641603 FAM72CH0Y354 149 aa4.27□□□□□ -1.73
SCN1A-220ENST00000641603 SIRPB1O00241 398 aa4.27□□□□□ -1.73
SCN1A-220ENST00000641603 ARPC3O15145 178 aa4.27□□□□□ -1.73
SCN1A-220ENST00000641603 USP2O75604 605 aaPredicted RBP4.27□□□□□ -1.73
SCN1A-220ENST00000641603 SFT2D2O95562 160 aa4.27□□□□□ -1.73
SCN1A-220ENST00000641603 GABRA3P34903 492 aa4.27□□□□□ -1.73
SCN1A-220ENST00000641603 SPINT3P49223 89 aa4.27□□□□□ -1.73
SCN1A-220ENST00000641603 IL24Q13007 206 aa4.27□□□□□ -1.73
SCN1A-220ENST00000641603 OR1Q1Q15612 314 aa4.27□□□□□ -1.73
SCN1A-220ENST00000641603 PRAMEF19Q5SWL8 479 aa4.27□□□□□ -1.73
SCN1A-220ENST00000641603 FAM72AQ5TYM5 149 aa4.27□□□□□ -1.73
SCN1A-220ENST00000641603 FAM72DQ6L9T8 149 aa4.27□□□□□ -1.73
SCN1A-220ENST00000641603 FAM72BQ86X60 149 aa4.27□□□□□ -1.73
SCN1A-220ENST00000641603 REM2Q8IYK8 340 aaPredicted RBP4.27□□□□□ -1.73
SCN1A-220ENST00000641603 TMEM130Q8N3G9 435 aa4.27□□□□□ -1.73
SCN1A-220ENST00000641603 OR4C16Q8NGL9 310 aa4.27□□□□□ -1.73
SCN1A-220ENST00000641603 OR5B2Q96R09 309 aa4.27□□□□□ -1.73
SCN1A-220ENST00000641603 TLCD2A6NGC4 264 aa4.27□□□□□ -1.73
SCN1A-220ENST00000641603 PDHXO00330 501 aa4.27□□□□□ -1.73
SCN1A-220ENST00000641603 SIAH2O43255 324 aa4.27□□□□□ -1.73
SCN1A-220ENST00000641603 CD3DP04234 171 aa4.27□□□□□ -1.73
SCN1A-220ENST00000641603 CD200P41217 278 aa4.27□□□□□ -1.73
SCN1A-220ENST00000641603 PIGPP57054 158 aa4.27□□□□□ -1.73
SCN1A-220ENST00000641603 ERVFRD-1P60508 538 aa4.27□□□□□ -1.73
SCN1A-220ENST00000641603 ZNF92Q03936 586 aa4.27□□□□□ -1.73
SCN1A-220ENST00000641603 ZNF79Q15937 498 aa4.27□□□□□ -1.73
SCN1A-220ENST00000641603 MRPL24Q96A35 216 aaKnown RBP4.27□□□□□ -1.73
SCN1A-220ENST00000641603 SEC22AQ96IW7 307 aa4.27□□□□□ -1.73
SCN1A-220ENST00000641603 RNF2Q99496 336 aa4.27□□□□□ -1.73
SCN1A-220ENST00000641603 SERTAD4Q9NUC0 356 aa4.27□□□□□ -1.73
SCN1A-220ENST00000641603 TDP1Q9NUW8 608 aa4.27□□□□□ -1.73
SCN1A-220ENST00000641603 B4GALT6Q9UBX8 382 aa4.27□□□□□ -1.73
SCN1A-220ENST00000641603 NPTNQ9Y639 398 aa4.27□□□□□ -1.73
SCN1A-220ENST00000641603 H0Y8G0 127 aa4.27□□□□□ -1.73
SCN1A-220ENST00000641603 PYCARD-AS1I3L0S3 204 aa4.27□□□□□ -1.73
SCN1A-220ENST00000641603 WNT10BO00744 389 aa4.27□□□□□ -1.73
SCN1A-220ENST00000641603 PDE6DO43924 150 aa4.27□□□□□ -1.73
Retrieved 100 of 20,778 RNA–protein pairs in 30.6 ms