RNA–Protein interactions for RNA: ENST00000637985.1

CLN3-264, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 764 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-264ENST00000637985 PARP8Q8N3A8 854 aa13.74□□□□□ -0.21
CLN3-264ENST00000637985 OR4K5Q8NGD3 323 aa13.74□□□□□ -0.21
CLN3-264ENST00000637985 OR52E2Q8NGJ4 325 aa13.74□□□□□ -0.21
CLN3-264ENST00000637985 MOSPD2Q8NHP6 518 aa13.74□□□□□ -0.21
CLN3-264ENST00000637985 SYNPRQ8TBG9 265 aa13.74□□□□□ -0.21
CLN3-264ENST00000637985 BPIFA2Q96DR5 249 aa13.74□□□□□ -0.21
CLN3-264ENST00000637985 ELMOD3Q96FG2 381 aa13.74□□□□□ -0.21
CLN3-264ENST00000637985 TXNIPQ9H3M7 391 aa13.74□□□□□ -0.21
CLN3-264ENST00000637985 RNF121Q9H920 327 aa13.74□□□□□ -0.21
CLN3-264ENST00000637985 SMURF2Q9HAU4 748 aa13.74□□□□□ -0.21
CLN3-264ENST00000637985 HIF3AQ9Y2N7 669 aa13.74□□□□□ -0.21
CLN3-264ENST00000637985 IGHV3OR16-10A0A075B7F0 116 aa13.73□□□□□ -0.21
CLN3-264ENST00000637985 GMNCA6NCL1 334 aa13.73□□□□□ -0.21
CLN3-264ENST00000637985 CXCR6O00574 342 aa13.73□□□□□ -0.21
CLN3-264ENST00000637985 CLPXO76031 633 aa13.73□□□□□ -0.21
CLN3-264ENST00000637985 IFNW1P05000 195 aa13.73□□□□□ -0.21
CLN3-264ENST00000637985 PPIAL4GP0DN37 164 aa13.73□□□□□ -0.21
CLN3-264ENST00000637985 IFI30P13284 250 aa13.73□□□□□ -0.21
CLN3-264ENST00000637985 MAKP20794 623 aa13.73□□□□□ -0.21
CLN3-264ENST00000637985 LAPTM4AQ15012 233 aa13.73□□□□□ -0.21
CLN3-264ENST00000637985 TSTQ16762 297 aaKnown RBP13.73□□□□□ -0.21
CLN3-264ENST00000637985 ANKDD1AQ495B1 522 aa13.73□□□□□ -0.21
CLN3-264ENST00000637985 ALG10Q5BKT4 473 aa13.73□□□□□ -0.21
CLN3-264ENST00000637985 C8orf82Q6P1X6 216 aaPredicted RBP13.73□□□□□ -0.21
CLN3-264ENST00000637985 HACD2Q6Y1H2 254 aa13.73□□□□□ -0.21
CLN3-264ENST00000637985 CBLL1Q75N03 491 aa13.73□□□□□ -0.21
CLN3-264ENST00000637985 VTCN1Q7Z7D3 282 aa13.73□□□□□ -0.21
CLN3-264ENST00000637985 OFCC1Q8IZS5 231 aa13.73□□□□□ -0.21
CLN3-264ENST00000637985 SLC30A7Q8NEW0 376 aa13.73□□□□□ -0.21
CLN3-264ENST00000637985 OR1J2Q8NGS2 313 aa13.73□□□□□ -0.21
CLN3-264ENST00000637985 GEMIN6Q8WXD5 167 aaKnown RBP13.73□□□□□ -0.21
CLN3-264ENST00000637985 GTF3AQ92664 365 aaKnown RBP13.73□□□□□ -0.21
CLN3-264ENST00000637985 FNDC11Q9BVV2 318 aa13.73□□□□□ -0.21
CLN3-264ENST00000637985 SIAEQ9HAT2 523 aa13.73□□□□□ -0.21
CLN3-264ENST00000637985 RNF114Q9Y508 228 aa13.73□□□□□ -0.21
CLN3-264ENST00000637985 NME4O00746 187 aa13.72□□□□□ -0.21
CLN3-264ENST00000637985 GSTA4O15217 222 aa13.72□□□□□ -0.21
CLN3-264ENST00000637985 ATP8B1O43520 1251 aa13.72□□□□□ -0.21
CLN3-264ENST00000637985 UBOX5O94941 541 aa13.72□□□□□ -0.21
CLN3-264ENST00000637985 FAM157BP0CG42 384 aa13.72□□□□□ -0.21
CLN3-264ENST00000637985 CD80P33681 288 aa13.72□□□□□ -0.21
CLN3-264ENST00000637985 SLC6A9P48067 706 aa13.72□□□□□ -0.21
CLN3-264ENST00000637985 SLC7A2P52569 658 aa13.72□□□□□ -0.21
CLN3-264ENST00000637985 MRPS34P82930 218 aaKnown RBP13.72□□□□□ -0.21
CLN3-264ENST00000637985 PLP2Q04941 152 aa13.72□□□□□ -0.21
CLN3-264ENST00000637985 SLC3A1Q07837 685 aa13.72□□□□□ -0.21
CLN3-264ENST00000637985 TRAM2Q15035 370 aa13.72□□□□□ -0.21
CLN3-264ENST00000637985 PDCD1Q15116 288 aa13.72□□□□□ -0.21
CLN3-264ENST00000637985 IFI44LQ53G44 452 aa13.72□□□□□ -0.21
CLN3-264ENST00000637985 FAM205BPQ63HN1 556 aa13.72□□□□□ -0.21
CLN3-264ENST00000637985 RNF113BQ8IZP6 322 aaKnown RBP13.72□□□□□ -0.21
CLN3-264ENST00000637985 FNDC8Q8TC99 324 aa13.72□□□□□ -0.21
CLN3-264ENST00000637985 ALG12Q9BV10 488 aa13.72□□□□□ -0.21
CLN3-264ENST00000637985 LRMDAQ9H2I8 198 aa13.72□□□□□ -0.21
CLN3-264ENST00000637985 KCNN2Q9H2S1 579 aa13.72□□□□□ -0.21
CLN3-264ENST00000637985 IQCMA0A1B0GVH7 501 aa13.71□□□□□ -0.21
CLN3-264ENST00000637985 C5orf63A6NC05 138 aa13.71□□□□□ -0.21
CLN3-264ENST00000637985 PLXNB1O43157 2135 aa13.71□□□□□ -0.21
CLN3-264ENST00000637985 PIP5K1CO60331 668 aa13.71□□□□□ -0.21
CLN3-264ENST00000637985 SNAP29O95721 258 aa13.71□□□□□ -0.21
CLN3-264ENST00000637985 ZNF682O95780 498 aa13.71□□□□□ -0.21
CLN3-264ENST00000637985 MMP7P09237 267 aaPredicted RBP13.71□□□□□ -0.21
CLN3-264ENST00000637985 YAP1P46937 504 aaKnown RBP13.71□□□□□ -0.21
CLN3-264ENST00000637985 PROK1P58294 105 aa13.71□□□□□ -0.21
CLN3-264ENST00000637985 RPL27P61353 136 aaKnown RBP13.71□□□□□ -0.21
CLN3-264ENST00000637985 PRKCDQ05655 676 aa13.71□□□□□ -0.21
CLN3-264ENST00000637985 FAM189A2Q15884 450 aa13.71□□□□□ -0.21
CLN3-264ENST00000637985 TBC1D28Q2M2D7 210 aa13.71□□□□□ -0.21
CLN3-264ENST00000637985 FAM209AQ5JX71 171 aa13.71□□□□□ -0.21
CLN3-264ENST00000637985 SAMD5Q5TGI4 173 aa13.71□□□□□ -0.21
CLN3-264ENST00000637985 PAQR4Q8N4S7 273 aaPredicted RBP13.71□□□□□ -0.21
CLN3-264ENST00000637985 RBM15BQ8NDT2 890 aaKnown RBP13.71□□□□□ -0.21
CLN3-264ENST00000637985 ZNF519Q8TB69 540 aa13.71□□□□□ -0.21
CLN3-264ENST00000637985 ACOT11Q8WXI4 607 aaPredicted RBP13.71□□□□□ -0.21
CLN3-264ENST00000637985 C11orf40Q8WZ69 217 aa13.71□□□□□ -0.21
CLN3-264ENST00000637985 HDAC2Q92769 488 aaKnown RBP13.71□□□□□ -0.21
CLN3-264ENST00000637985 NMD3Q96D46 503 aaKnown RBP13.71□□□□□ -0.21
CLN3-264ENST00000637985 CMTM5Q96DZ9 223 aa13.71□□□□□ -0.21
CLN3-264ENST00000637985 CHIAQ9BZP6 476 aa13.71□□□□□ -0.21
CLN3-264ENST00000637985 CDH20Q9HBT6 801 aa13.71□□□□□ -0.21
CLN3-264ENST00000637985 TCF7L1Q9HCS4 588 aa13.71□□□□□ -0.21
CLN3-264ENST00000637985 MAN2C1Q9NTJ4 1040 aa13.71□□□□□ -0.21
CLN3-264ENST00000637985 GMPR2Q9P2T1 348 aaKnown RBP13.71□□□□□ -0.21
CLN3-264ENST00000637985 ASH2LQ9UBL3 628 aa13.71□□□□□ -0.21
CLN3-264ENST00000637985 SNX13Q9Y5W8 968 aa13.71□□□□□ -0.21
CLN3-264ENST00000637985 TANC2Q9HCD6 1990 aa13.71□□□□□ -0.22
CLN3-264ENST00000637985 COL7A1Q02388 2944 aa13.7□□□□□ -0.22
CLN3-264ENST00000637985 A8MXK9 166 aa13.7□□□□□ -0.22
CLN3-264ENST00000637985 J3KTA2 159 aa13.7□□□□□ -0.22
CLN3-264ENST00000637985 FFAR1O14842 300 aa13.7□□□□□ -0.22
CLN3-264ENST00000637985 SLC2A10O95528 541 aa13.7□□□□□ -0.22
CLN3-264ENST00000637985 SERPINA1P01009 418 aa13.7□□□□□ -0.22
CLN3-264ENST00000637985 MT-ND5P03915 603 aa13.7□□□□□ -0.22
CLN3-264ENST00000637985 SLC9A3P48764 834 aa13.7□□□□□ -0.22
CLN3-264ENST00000637985 GSK3BP49841 420 aa13.7□□□□□ -0.22
CLN3-264ENST00000637985 NUDT2P50583 147 aa13.7□□□□□ -0.22
CLN3-264ENST00000637985 LOXL3P58215 753 aa13.7□□□□□ -0.22
CLN3-264ENST00000637985 CTXN1P60606 82 aa13.7□□□□□ -0.22
CLN3-264ENST00000637985 ERVS71-1P61550 626 aa13.7□□□□□ -0.22
CLN3-264ENST00000637985 SEC61A1P61619 476 aaKnown RBP13.7□□□□□ -0.22
Retrieved 100 of 20,778 RNA–protein pairs in 33.6 ms