RNA–Protein interactions for RNA: ENST00000637686.1

CLN3-261, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 533 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-261ENST00000637686 C1QTNF12Q5T7M4 302 aa8.59□□□□□ -1.03
CLN3-261ENST00000637686 LINC01590Q5TEZ4 76 aa8.59□□□□□ -1.03
CLN3-261ENST00000637686 ZNF773Q6PK81 442 aa8.59□□□□□ -1.03
CLN3-261ENST00000637686 ZNF813Q6ZN06 617 aa8.59□□□□□ -1.03
CLN3-261ENST00000637686 FOXL2NBQ6ZUU3 175 aa8.59□□□□□ -1.03
CLN3-261ENST00000637686 ZNF540Q8NDQ6 660 aa8.59□□□□□ -1.03
CLN3-261ENST00000637686 BPIFB6Q8NFQ5 453 aa8.59□□□□□ -1.03
CLN3-261ENST00000637686 TEAD3Q99594 435 aa8.59□□□□□ -1.03
CLN3-261ENST00000637686 SYT4Q9H2B2 425 aa8.59□□□□□ -1.03
CLN3-261ENST00000637686 DNAJC27Q9NZQ0 273 aa8.59□□□□□ -1.03
CLN3-261ENST00000637686 KCNG2Q9UJ96 466 aa8.59□□□□□ -1.03
CLN3-261ENST00000637686 DIMT1Q9UNQ2 313 aaKnown RBP8.59□□□□□ -1.03
CLN3-261ENST00000637686 B9D1Q9UPM9 204 aa8.59□□□□□ -1.03
CLN3-261ENST00000637686 AKAP6Q13023 2319 aa8.59□□□□□ -1.03
CLN3-261ENST00000637686 MAST4O15021 2626 aa8.59□□□□□ -1.03
CLN3-261ENST00000637686 SPG11Q96JI7 2443 aa8.59□□□□□ -1.03
CLN3-261ENST00000637686 IGLV1-36A0A0B4J1U3 117 aa8.58□□□□□ -1.04
CLN3-261ENST00000637686 IGKV1D-43A0A0B4J1Z2 117 aa8.58□□□□□ -1.04
CLN3-261ENST00000637686 IGHV1-18A0A0C4DH31 117 aa8.58□□□□□ -1.04
CLN3-261ENST00000637686 J3QRE1 110 aa8.58□□□□□ -1.04
CLN3-261ENST00000637686 RGS10O43665 173 aa8.58□□□□□ -1.04
CLN3-261ENST00000637686 IGHA1P01876 353 aa8.58□□□□□ -1.04
CLN3-261ENST00000637686 HLA-HP01893 362 aa8.58□□□□□ -1.04
CLN3-261ENST00000637686 CDK1P06493 297 aa8.58□□□□□ -1.04
CLN3-261ENST00000637686 CD79AP11912 226 aa8.58□□□□□ -1.04
CLN3-261ENST00000637686 B4GALT1P15291 398 aa8.58□□□□□ -1.04
CLN3-261ENST00000637686 PTAFRP25105 342 aa8.58□□□□□ -1.04
CLN3-261ENST00000637686 HSF2Q03933 536 aa8.58□□□□□ -1.04
CLN3-261ENST00000637686 GLO1Q04760 184 aa8.58□□□□□ -1.04
CLN3-261ENST00000637686 PIGFQ07326 219 aa8.58□□□□□ -1.04
CLN3-261ENST00000637686 APOFQ13790 326 aa8.58□□□□□ -1.04
CLN3-261ENST00000637686 KCNMB1Q16558 191 aa8.58□□□□□ -1.04
CLN3-261ENST00000637686 PCK2Q16822 640 aa8.58□□□□□ -1.04
CLN3-261ENST00000637686 TEX30Q5JUR7 227 aa8.58□□□□□ -1.04
CLN3-261ENST00000637686 SLC25A47Q6Q0C1 308 aa8.58□□□□□ -1.04
CLN3-261ENST00000637686 ZNF627Q7L945 461 aa8.58□□□□□ -1.04
CLN3-261ENST00000637686 CCDC36Q8IYA8 594 aa8.58□□□□□ -1.04
CLN3-261ENST00000637686 OR6V1Q8N148 313 aa8.58□□□□□ -1.04
CLN3-261ENST00000637686 SVOPQ8N4V2 548 aa8.58□□□□□ -1.04
CLN3-261ENST00000637686 CYB561A3Q8NBI2 242 aa8.58□□□□□ -1.04
CLN3-261ENST00000637686 TSPAN14Q8NG11 270 aa8.58□□□□□ -1.04
CLN3-261ENST00000637686 NSMAFQ92636 917 aa8.58□□□□□ -1.04
CLN3-261ENST00000637686 HTRA1Q92743 480 aa8.58□□□□□ -1.04
CLN3-261ENST00000637686 GGHQ92820 318 aa8.58□□□□□ -1.04
CLN3-261ENST00000637686 RNFT2Q96EX2 444 aa8.58□□□□□ -1.04
CLN3-261ENST00000637686 COPS4Q9BT78 406 aa8.58□□□□□ -1.04
CLN3-261ENST00000637686 WACQ9BTA9 647 aa8.58□□□□□ -1.04
CLN3-261ENST00000637686 CDCA4Q9BXL8 241 aa8.58□□□□□ -1.04
CLN3-261ENST00000637686 MRPS26Q9BYN8 205 aaKnown RBP8.58□□□□□ -1.04
CLN3-261ENST00000637686 RPRD1BQ9NQG5 326 aaKnown RBP8.58□□□□□ -1.04
CLN3-261ENST00000637686 TMEM38BQ9NVV0 291 aa8.58□□□□□ -1.04
CLN3-261ENST00000637686 CRNNQ9UBG3 495 aaPredicted RBP8.58□□□□□ -1.04
CLN3-261ENST00000637686 SCOCQ9UIL1 159 aa8.58□□□□□ -1.04
CLN3-261ENST00000637686 RAI1Q7Z5J4 1906 aaPredicted RBP8.57□□□□□ -1.04
CLN3-261ENST00000637686 FAM183AA6NL82 134 aa8.57□□□□□ -1.04
CLN3-261ENST00000637686 XPNPEP2O43895 674 aa8.57□□□□□ -1.04
CLN3-261ENST00000637686 IGLV1-44P01699 117 aa8.57□□□□□ -1.04
CLN3-261ENST00000637686 CELA3BP08861 270 aa8.57□□□□□ -1.04
CLN3-261ENST00000637686 SBK2P0C263 348 aa8.57□□□□□ -1.04
CLN3-261ENST00000637686 OR8G3PP0DMU2 310 aa8.57□□□□□ -1.04
CLN3-261ENST00000637686 CBR1P16152 277 aa8.57□□□□□ -1.04
CLN3-261ENST00000637686 CTLA4P16410 223 aa8.57□□□□□ -1.04
CLN3-261ENST00000637686 PAX7P23759 505 aa8.57□□□□□ -1.04
CLN3-261ENST00000637686 GSTT1P30711 240 aa8.57□□□□□ -1.04
CLN3-261ENST00000637686 ZNF84P51523 738 aa8.57□□□□□ -1.04
CLN3-261ENST00000637686 IDH3GP51553 393 aaPredicted RBP8.57□□□□□ -1.04
CLN3-261ENST00000637686 ART1P52961 327 aa8.57□□□□□ -1.04
CLN3-261ENST00000637686 FMODQ06828 376 aa8.57□□□□□ -1.04
CLN3-261ENST00000637686 ST3GAL4Q11206 333 aa8.57□□□□□ -1.04
CLN3-261ENST00000637686 IRF3Q14653 427 aa8.57□□□□□ -1.04
CLN3-261ENST00000637686 TBCEQ15813 527 aaPredicted RBP8.57□□□□□ -1.04
CLN3-261ENST00000637686 SMN1Q16637 294 aaKnown RBP8.57□□□□□ -1.04
CLN3-261ENST00000637686 DEFB113Q30KQ7 82 aa8.57□□□□□ -1.04
CLN3-261ENST00000637686 KLHL12Q53G59 568 aa8.57□□□□□ -1.04
CLN3-261ENST00000637686 SLC22A25Q6T423 547 aa8.57□□□□□ -1.04
CLN3-261ENST00000637686 C20orf204Q6ZNR8 217 aa8.57□□□□□ -1.04
CLN3-261ENST00000637686 MDP1Q86V88 176 aa8.57□□□□□ -1.04
CLN3-261ENST00000637686 GLB1L2Q8IW92 636 aa8.57□□□□□ -1.04
CLN3-261ENST00000637686 SKA3Q8IX90 412 aa8.57□□□□□ -1.04
CLN3-261ENST00000637686 SLC22A24Q8N4F4 322 aa8.57□□□□□ -1.04
CLN3-261ENST00000637686 ZNF611Q8N823 705 aa8.57□□□□□ -1.04
CLN3-261ENST00000637686 FAM169BQ8N8A8 192 aa8.57□□□□□ -1.04
CLN3-261ENST00000637686 ZNF454Q8N9F8 522 aa8.57□□□□□ -1.04
CLN3-261ENST00000637686 PROKR2Q8NFJ6 384 aa8.57□□□□□ -1.04
CLN3-261ENST00000637686 BBS1Q8NFJ9 593 aa8.57□□□□□ -1.04
CLN3-261ENST00000637686 HAVCR2Q8TDQ0 301 aa8.57□□□□□ -1.04
CLN3-261ENST00000637686 FCGR1BQ92637 280 aa8.57□□□□□ -1.04
CLN3-261ENST00000637686 FBXW5Q969U6 566 aa8.57□□□□□ -1.04
CLN3-261ENST00000637686 MBD6Q96DN6 1003 aa8.57□□□□□ -1.04
CLN3-261ENST00000637686 LGALS12Q96DT0 336 aa8.57□□□□□ -1.04
CLN3-261ENST00000637686 MRPL48Q96GC5 212 aaKnown RBP8.57□□□□□ -1.04
CLN3-261ENST00000637686 TMEM80Q96HE8 168 aa8.57□□□□□ -1.04
CLN3-261ENST00000637686 RADILQ96JH8 1075 aa8.57□□□□□ -1.04
CLN3-261ENST00000637686 CNN2Q99439 309 aaKnown RBP8.57□□□□□ -1.04
CLN3-261ENST00000637686 CCL19Q99731 98 aa8.57□□□□□ -1.04
CLN3-261ENST00000637686 SH3GL3Q99963 347 aa8.57□□□□□ -1.04
CLN3-261ENST00000637686 HCAR1Q9BXC0 346 aa8.57□□□□□ -1.04
CLN3-261ENST00000637686 YIPF3Q9GZM5 350 aa8.57□□□□□ -1.04
CLN3-261ENST00000637686 NUAK2Q9H093 628 aa8.57□□□□□ -1.04
CLN3-261ENST00000637686 OR51V1Q9H2C8 321 aa8.57□□□□□ -1.04
Retrieved 100 of 20,778 RNA–protein pairs in 28.6 ms