RNA–Protein interactions for RNA: ENST00000637038.1

SCN1A-214, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

TSL 5

Gene SCN1A, Length 4,268 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-214ENST00000637038 NINQ8N4C6 2090 aa3.6□□□□□ -1.83
SCN1A-214ENST00000637038 CENPVL1A0A0U1RR11 272 aa3.6□□□□□ -1.83
SCN1A-214ENST00000637038 OR6C68A6NDL8 312 aa3.6□□□□□ -1.83
SCN1A-214ENST00000637038 MFSD2BA6NFX1 497 aa3.6□□□□□ -1.83
SCN1A-214ENST00000637038 G3V3Q6 166 aa3.6□□□□□ -1.83
SCN1A-214ENST00000637038 PYCARD-AS1I3L0S3 204 aa3.6□□□□□ -1.83
SCN1A-214ENST00000637038 DVL2O14641 736 aa3.6□□□□□ -1.83
SCN1A-214ENST00000637038 SUSD5O60279 629 aa3.6□□□□□ -1.83
SCN1A-214ENST00000637038 NSA2O95478 260 aaKnown RBP3.6□□□□□ -1.83
SCN1A-214ENST00000637038 HRGP04196 525 aa3.6□□□□□ -1.83
SCN1A-214ENST00000637038 ANKRD34CP0C6C1 535 aa3.6□□□□□ -1.83
SCN1A-214ENST00000637038 GABRA1P14867 456 aa3.6□□□□□ -1.83
SCN1A-214ENST00000637038 HTR2CP28335 458 aa3.6□□□□□ -1.83
SCN1A-214ENST00000637038 DEFA5Q01523 94 aa3.6□□□□□ -1.83
SCN1A-214ENST00000637038 HHEXQ03014 270 aa3.6□□□□□ -1.83
SCN1A-214ENST00000637038 GLO1Q04760 184 aa3.6□□□□□ -1.83
SCN1A-214ENST00000637038 FAM53BQ14153 422 aa3.6□□□□□ -1.83
SCN1A-214ENST00000637038 KRBOX4Q5JUW0 171 aa3.6□□□□□ -1.83
SCN1A-214ENST00000637038 ARHGAP40Q5TG30 622 aa3.6□□□□□ -1.83
SCN1A-214ENST00000637038 OR5M10Q6IEU7 315 aa3.6□□□□□ -1.83
SCN1A-214ENST00000637038 TMEM65Q6PI78 240 aa3.6□□□□□ -1.83
SCN1A-214ENST00000637038 ALKAL2Q6UX46 152 aa3.6□□□□□ -1.83
SCN1A-214ENST00000637038 LINC00114Q6XXX2 140 aa3.6□□□□□ -1.83
SCN1A-214ENST00000637038 PGAP1Q75T13 922 aa3.6□□□□□ -1.83
SCN1A-214ENST00000637038 SLC29A4Q7RTT9 530 aa3.6□□□□□ -1.83
SCN1A-214ENST00000637038 CDC20BQ86Y33 519 aa3.6□□□□□ -1.83
SCN1A-214ENST00000637038 GABRG1Q8N1C3 465 aa3.6□□□□□ -1.83
SCN1A-214ENST00000637038 JAGN1Q8N5M9 183 aa3.6□□□□□ -1.83
SCN1A-214ENST00000637038 FRMD1Q8N878 549 aa3.6□□□□□ -1.83
SCN1A-214ENST00000637038 RCBTB1Q8NDN9 531 aa3.6□□□□□ -1.83
SCN1A-214ENST00000637038 OR13C3Q8NGS6 347 aa3.6□□□□□ -1.83
SCN1A-214ENST00000637038 OR8K3Q8NH51 312 aa3.6□□□□□ -1.83
SCN1A-214ENST00000637038 STK35Q8TDR2 534 aa3.6□□□□□ -1.83
SCN1A-214ENST00000637038 DOK4Q8TEW6 326 aa3.6□□□□□ -1.83
SCN1A-214ENST00000637038 ANKRD9Q96BM1 317 aaPredicted RBP3.6□□□□□ -1.83
SCN1A-214ENST00000637038 ZBTB8AQ96BR9 441 aa3.6□□□□□ -1.83
SCN1A-214ENST00000637038 C4orf45Q96LM5 186 aa3.6□□□□□ -1.83
SCN1A-214ENST00000637038 VSTM2LQ96N03 204 aa3.6□□□□□ -1.83
SCN1A-214ENST00000637038 GABRG3Q99928 467 aa3.6□□□□□ -1.83
SCN1A-214ENST00000637038 ENKD1Q9H0I2 346 aa3.6□□□□□ -1.83
SCN1A-214ENST00000637038 ELOVL3Q9HB03 270 aa3.6□□□□□ -1.83
SCN1A-214ENST00000637038 SLC39A1Q9NY26 324 aa3.6□□□□□ -1.83
SCN1A-214ENST00000637038 SERGEFQ9UGK8 458 aa3.6□□□□□ -1.83
SCN1A-214ENST00000637038 COPS3Q9UNS2 423 aa3.6□□□□□ -1.83
SCN1A-214ENST00000637038 TPRP12270 2363 aaKnown RBP3.6□□□□□ -1.83
SCN1A-214ENST00000637038 CHD8Q9HCK8 2581 aa3.6□□□□□ -1.83
SCN1A-214ENST00000637038 TRBV5-7A0A0A0MS05 114 aa3.59□□□□□ -1.83
SCN1A-214ENST00000637038 A0A0A6YYC8 382 aaPredicted RBP3.59□□□□□ -1.83
SCN1A-214ENST00000637038 OR2M5A3KFT3 312 aa3.59□□□□□ -1.83
SCN1A-214ENST00000637038 NPIPA5E9PKD4 350 aa3.59□□□□□ -1.83
SCN1A-214ENST00000637038 H7C2Y5 167 aa3.59□□□□□ -1.83
SCN1A-214ENST00000637038 I3L1I5 382 aaPredicted RBP3.59□□□□□ -1.83
SCN1A-214ENST00000637038 NDUFS6O75380 124 aaKnown RBP3.59□□□□□ -1.83
SCN1A-214ENST00000637038 MPC2O95563 127 aa3.59□□□□□ -1.83
SCN1A-214ENST00000637038 APOC3P02656 99 aa3.59□□□□□ -1.83
SCN1A-214ENST00000637038 NR2C1P13056 603 aa3.59□□□□□ -1.83
SCN1A-214ENST00000637038 PVRP15151 417 aa3.59□□□□□ -1.83
SCN1A-214ENST00000637038 CALCRP30988 508 aa3.59□□□□□ -1.83
SCN1A-214ENST00000637038 CSF2RBP32927 897 aa3.59□□□□□ -1.83
SCN1A-214ENST00000637038 DLSTP36957 453 aa3.59□□□□□ -1.83
SCN1A-214ENST00000637038 PPICP45877 212 aa3.59□□□□□ -1.83
SCN1A-214ENST00000637038 DAP3P51398 398 aaKnown RBP3.59□□□□□ -1.83
SCN1A-214ENST00000637038 AFF3P51826 1226 aaKnown RBP3.59□□□□□ -1.83
SCN1A-214ENST00000637038 ZP1P60852 638 aa3.59□□□□□ -1.83
SCN1A-214ENST00000637038 RPS4XP62701 263 aaKnown RBP3.59□□□□□ -1.83
SCN1A-214ENST00000637038 SORDQ00796 357 aa3.59□□□□□ -1.83
SCN1A-214ENST00000637038 FLI1Q01543 452 aaPredicted RBP3.59□□□□□ -1.83
SCN1A-214ENST00000637038 SCGB2A2Q13296 93 aa3.59□□□□□ -1.83
SCN1A-214ENST00000637038 BTN1A1Q13410 526 aa3.59□□□□□ -1.83
SCN1A-214ENST00000637038 ARL6IP1Q15041 203 aa3.59□□□□□ -1.83
SCN1A-214ENST00000637038 TAF13Q15543 124 aa3.59□□□□□ -1.83
SCN1A-214ENST00000637038 SCGB2B2Q4G0G5 96 aa3.59□□□□□ -1.83
SCN1A-214ENST00000637038 KLHL26Q53HC5 615 aa3.59□□□□□ -1.83
SCN1A-214ENST00000637038 VWA2Q5GFL6 755 aa3.59□□□□□ -1.83
SCN1A-214ENST00000637038 CLEC2AQ6UVW9 174 aa3.59□□□□□ -1.83
SCN1A-214ENST00000637038 NDUFAF7Q7L592 441 aa3.59□□□□□ -1.83
SCN1A-214ENST00000637038 PARGQ86W56 976 aa3.59□□□□□ -1.83
SCN1A-214ENST00000637038 ZNF679Q8IYX0 411 aa3.59□□□□□ -1.83
SCN1A-214ENST00000637038 CHST4Q8NCG5 386 aa3.59□□□□□ -1.83
SCN1A-214ENST00000637038 OR5T3Q8NGG3 340 aa3.59□□□□□ -1.83
SCN1A-214ENST00000637038 OR51S1Q8NGJ8 323 aa3.59□□□□□ -1.83
SCN1A-214ENST00000637038 OR1J4Q8NGS1 313 aa3.59□□□□□ -1.83
SCN1A-214ENST00000637038 OR8S1Q8NH09 359 aa3.59□□□□□ -1.83
SCN1A-214ENST00000637038 DUSP19Q8WTR2 217 aa3.59□□□□□ -1.83
SCN1A-214ENST00000637038 HOXB13Q92826 284 aaPredicted RBP3.59□□□□□ -1.83
SCN1A-214ENST00000637038 DAZLQ92904 295 aaKnown RBP3.59□□□□□ -1.83
SCN1A-214ENST00000637038 MMABQ96EY8 250 aaPredicted RBP3.59□□□□□ -1.83
SCN1A-214ENST00000637038 ARL5BQ96KC2 179 aa3.59□□□□□ -1.83
SCN1A-214ENST00000637038 OR8B4Q96RC9 309 aa3.59□□□□□ -1.83
SCN1A-214ENST00000637038 SLC38A3Q99624 504 aa3.59□□□□□ -1.83
SCN1A-214ENST00000637038 C12orf49Q9H741 205 aa3.59□□□□□ -1.83
SCN1A-214ENST00000637038 IL21RQ9HBE5 538 aa3.59□□□□□ -1.83
SCN1A-214ENST00000637038 MYOZ1Q9NP98 299 aaPredicted RBP3.59□□□□□ -1.83
SCN1A-214ENST00000637038 MMP25Q9NPA2 562 aa3.59□□□□□ -1.83
SCN1A-214ENST00000637038 STARD5Q9NSY2 213 aa3.59□□□□□ -1.83
SCN1A-214ENST00000637038 FBXO34Q9NWN3 711 aa3.59□□□□□ -1.83
SCN1A-214ENST00000637038 MRM2Q9UI43 246 aaKnown RBP3.59□□□□□ -1.83
SCN1A-214ENST00000637038 KCNE5Q9UJ90 142 aa3.59□□□□□ -1.83
SCN1A-214ENST00000637038 RAB22AQ9UL26 194 aa3.59□□□□□ -1.83
SCN1A-214ENST00000637038 NPIPA1Q9UND3 350 aa3.59□□□□□ -1.83
Retrieved 100 of 20,778 RNA–protein pairs in 28.4 ms