RNA–Protein interactions for RNA: ENST00000636355.1

CLN3-248, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 975 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-248ENST00000636355 PEX16Q9Y5Y5 336 aa9.35□□□□□ -0.91
CLN3-248ENST00000636355 R4GMQ9 66 aa9.35□□□□□ -0.91
CLN3-248ENST00000636355 TRBV5-5A0A0J9YX44 114 aa9.34□□□□□ -0.91
CLN3-248ENST00000636355 TTLL8A6PVC2 850 aa9.34□□□□□ -0.91
CLN3-248ENST00000636355 TAF4O00268 1085 aa9.34□□□□□ -0.91
CLN3-248ENST00000636355 MRPL33O75394 65 aaKnown RBP9.34□□□□□ -0.91
CLN3-248ENST00000636355 SRSF10O75494 262 aaKnown RBP9.34□□□□□ -0.91
CLN3-248ENST00000636355 ZFPL1O95159 310 aa9.34□□□□□ -0.91
CLN3-248ENST00000636355 ISG15P05161 165 aa9.34□□□□□ -0.91
CLN3-248ENST00000636355 YES1P07947 543 aa9.34□□□□□ -0.91
CLN3-248ENST00000636355 CST2P09228 141 aa9.34□□□□□ -0.91
CLN3-248ENST00000636355 INHBBP09529 407 aa9.34□□□□□ -0.91
CLN3-248ENST00000636355 CD8BP10966 210 aa9.34□□□□□ -0.91
CLN3-248ENST00000636355 SPINK2P20155 84 aa9.34□□□□□ -0.91
CLN3-248ENST00000636355 CTSSP25774 331 aa9.34□□□□□ -0.91
CLN3-248ENST00000636355 CFPP27918 469 aa9.34□□□□□ -0.91
CLN3-248ENST00000636355 S100A5P33763 92 aa9.34□□□□□ -0.91
CLN3-248ENST00000636355 PTGER4P35408 488 aa9.34□□□□□ -0.91
CLN3-248ENST00000636355 PEX19P40855 299 aa9.34□□□□□ -0.91
CLN3-248ENST00000636355 ETV6P41212 452 aa9.34□□□□□ -0.91
CLN3-248ENST00000636355 PCBD1P61457 104 aa9.34□□□□□ -0.91
CLN3-248ENST00000636355 SLC3A1Q07837 685 aa9.34□□□□□ -0.91
CLN3-248ENST00000636355 SCRN3Q0VDG4 424 aa9.34□□□□□ -0.91
CLN3-248ENST00000636355 DBPQ10586 325 aaPredicted RBP9.34□□□□□ -0.91
CLN3-248ENST00000636355 ECH1Q13011 328 aa9.34□□□□□ -0.91
CLN3-248ENST00000636355 Q499Y3 187 aa9.34□□□□□ -0.91
CLN3-248ENST00000636355 SOWAHCQ53LP3 525 aaPredicted RBP9.34□□□□□ -0.91
CLN3-248ENST00000636355 ZMAT1Q5H9K5 638 aa9.34□□□□□ -0.91
CLN3-248ENST00000636355 KLHL24Q6TFL4 600 aa9.34□□□□□ -0.91
CLN3-248ENST00000636355 LRRN1Q6UXK5 716 aa9.34□□□□□ -0.91
CLN3-248ENST00000636355 RPTNQ6XPR3 784 aa9.34□□□□□ -0.91
CLN3-248ENST00000636355 ZNF704Q6ZNC4 412 aaPredicted RBP9.34□□□□□ -0.91
CLN3-248ENST00000636355 LRRC69Q6ZNQ3 347 aa9.34□□□□□ -0.91
CLN3-248ENST00000636355 FGD2Q7Z6J4 655 aa9.34□□□□□ -0.91
CLN3-248ENST00000636355 DPPA2Q7Z7J5 298 aa9.34□□□□□ -0.91
CLN3-248ENST00000636355 CATSPERDQ86XM0 798 aa9.34□□□□□ -0.91
CLN3-248ENST00000636355 GJC3Q8NFK1 279 aa9.34□□□□□ -0.91
CLN3-248ENST00000636355 OR6Q1Q8NGQ2 317 aa9.34□□□□□ -0.91
CLN3-248ENST00000636355 ABHD4Q8TB40 342 aa9.34□□□□□ -0.91
CLN3-248ENST00000636355 FNDC9Q8TBE3 224 aa9.34□□□□□ -0.91
CLN3-248ENST00000636355 GPR148Q8TDV2 347 aa9.34□□□□□ -0.91
CLN3-248ENST00000636355 SMAP2Q8WU79 429 aaPredicted RBP9.34□□□□□ -0.91
CLN3-248ENST00000636355 ACOT12Q8WYK0 555 aa9.34□□□□□ -0.91
CLN3-248ENST00000636355 ROBO4Q8WZ75 1007 aa9.34□□□□□ -0.91
CLN3-248ENST00000636355 SLAMF6Q96DU3 332 aa9.34□□□□□ -0.91
CLN3-248ENST00000636355 GMPPAQ96IJ6 420 aaPredicted RBP9.34□□□□□ -0.91
CLN3-248ENST00000636355 MAP6Q96JE9 813 aa9.34□□□□□ -0.91
CLN3-248ENST00000636355 WDFY2Q96P53 400 aa9.34□□□□□ -0.91
CLN3-248ENST00000636355 AMELYQ99218 206 aa9.34□□□□□ -0.91
CLN3-248ENST00000636355 MRI1Q9BV20 369 aa9.34□□□□□ -0.91
CLN3-248ENST00000636355 HDHD5Q9BXW7 423 aa9.34□□□□□ -0.91
CLN3-248ENST00000636355 TTTY10Q9BZA0 68 aa9.34□□□□□ -0.91
CLN3-248ENST00000636355 PRRG4Q9BZD6 226 aa9.34□□□□□ -0.91
CLN3-248ENST00000636355 HDHD2Q9H0R4 259 aa9.34□□□□□ -0.91
CLN3-248ENST00000636355 SEC61A2Q9H9S3 476 aa9.34□□□□□ -0.91
CLN3-248ENST00000636355 TMEM38BQ9NVV0 291 aa9.34□□□□□ -0.91
CLN3-248ENST00000636355 MALT1Q9UDY8 824 aa9.34□□□□□ -0.91
CLN3-248ENST00000636355 PMF1-BGLAPU3KQ54 211 aa9.34□□□□□ -0.91
CLN3-248ENST00000636355 CLDN25C9JDP6 229 aa9.33□□□□□ -0.92
CLN3-248ENST00000636355 ZNF587BE7ETH6 402 aa9.33□□□□□ -0.92
CLN3-248ENST00000636355 LOC110117498-PIK3R3F6TDL0 507 aa9.33□□□□□ -0.92
CLN3-248ENST00000636355 CASKO14936 926 aa9.33□□□□□ -0.92
CLN3-248ENST00000636355 SS18L1O75177 396 aaPredicted RBP9.33□□□□□ -0.92
CLN3-248ENST00000636355 CDRT1O95170 752 aa9.33□□□□□ -0.92
CLN3-248ENST00000636355 FARS2O95363 451 aaKnown RBP9.33□□□□□ -0.92
CLN3-248ENST00000636355 CNOT4O95628 575 aaKnown RBP9.33□□□□□ -0.92
CLN3-248ENST00000636355 GPANK1O95872 356 aa9.33□□□□□ -0.92
CLN3-248ENST00000636355 CD2P06729 351 aa9.33□□□□□ -0.92
CLN3-248ENST00000636355 H2BFMP0C1H6 154 aa9.33□□□□□ -0.92
CLN3-248ENST00000636355 FSTP19883 344 aa9.33□□□□□ -0.92
CLN3-248ENST00000636355 ACHEP22303 614 aa9.33□□□□□ -0.92
CLN3-248ENST00000636355 OTX1P32242 354 aaPredicted RBP9.33□□□□□ -0.92
CLN3-248ENST00000636355 SDC2P34741 201 aa9.33□□□□□ -0.92
CLN3-248ENST00000636355 NANOS3P60323 173 aaKnown RBP9.33□□□□□ -0.92
CLN3-248ENST00000636355 RPS11P62280 158 aaKnown RBP eCLIP9.33□□□□□ -0.92
CLN3-248ENST00000636355 PMP22Q01453 160 aa9.33□□□□□ -0.92
CLN3-248ENST00000636355 SRYQ05066 204 aa9.33□□□□□ -0.92
CLN3-248ENST00000636355 DCTN2Q13561 401 aaKnown RBP9.33□□□□□ -0.92
CLN3-248ENST00000636355 ZNF846Q147U1 533 aa9.33□□□□□ -0.92
CLN3-248ENST00000636355 ACSM3Q53FZ2 586 aa9.33□□□□□ -0.92
CLN3-248ENST00000636355 WDR38Q5JTN6 314 aa9.33□□□□□ -0.92
CLN3-248ENST00000636355 DDI2Q5TDH0 399 aa9.33□□□□□ -0.92
CLN3-248ENST00000636355 OR2A2Q6IF42 318 aa9.33□□□□□ -0.92
CLN3-248ENST00000636355 OR7E24Q6IFN5 339 aa9.33□□□□□ -0.92
CLN3-248ENST00000636355 UNQ9370/PRO34162Q6UXP9 181 aa9.33□□□□□ -0.92
CLN3-248ENST00000636355 HIST2H2ABQ8IUE6 130 aaPredicted RBP9.33□□□□□ -0.92
CLN3-248ENST00000636355 ZNF676Q8N7Q3 588 aa9.33□□□□□ -0.92
CLN3-248ENST00000636355 CCDC54Q8NEL0 328 aa9.33□□□□□ -0.92
CLN3-248ENST00000636355 IL17RDQ8NFM7 739 aa9.33□□□□□ -0.92
CLN3-248ENST00000636355 BORCS5Q969J3 196 aa9.33□□□□□ -0.92
CLN3-248ENST00000636355 ITFG2Q969R8 447 aa9.33□□□□□ -0.92
CLN3-248ENST00000636355 APH1AQ96BI3 265 aa9.33□□□□□ -0.92
CLN3-248ENST00000636355 DOCK7Q96N67 2140 aa9.33□□□□□ -0.92
CLN3-248ENST00000636355 FOXB1Q99853 325 aa9.33□□□□□ -0.92
CLN3-248ENST00000636355 ZNF416Q9BWM5 594 aa9.33□□□□□ -0.92
CLN3-248ENST00000636355 DEFB127Q9H1M4 99 aa9.33□□□□□ -0.92
CLN3-248ENST00000636355 SMURF1Q9HCE7 757 aa9.33□□□□□ -0.92
CLN3-248ENST00000636355 AKIP1Q9NQ31 210 aa9.33□□□□□ -0.92
CLN3-248ENST00000636355 FRRS1LQ9P0K9 344 aa9.33□□□□□ -0.92
CLN3-248ENST00000636355 ASH2LQ9UBL3 628 aa9.33□□□□□ -0.92
Retrieved 100 of 20,778 RNA–protein pairs in 64.6 ms