RNA–Protein interactions for RNA: ENST00000620219.4

CPSF1-213, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CPSF1, Length 4,462 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-213ENST00000620219 PLEKHB1Q9UF11 243 aaPredicted RBP14.03□□□□□ -0.16
CPSF1-213ENST00000620219 ZMIZ1Q9ULJ6 1067 aa14.03□□□□□ -0.16
CPSF1-213ENST00000620219 IGF2RP11717 2491 aa14.03□□□□□ -0.16
CPSF1-213ENST00000620219 TPOP07202 933 aa14.03□□□□□ -0.16
CPSF1-213ENST00000620219 FAPQ12884 760 aa14.03□□□□□ -0.16
CPSF1-213ENST00000620219 OR5D18Q8NGL1 313 aa14.03□□□□□ -0.16
CPSF1-213ENST00000620219 FGGYQ96C11 551 aa14.03□□□□□ -0.16
CPSF1-213ENST00000620219 DERL3Q96Q80 235 aa14.03□□□□□ -0.16
CPSF1-213ENST00000620219 NLKQ9UBE8 527 aa14.03□□□□□ -0.16
CPSF1-213ENST00000620219 MRM2Q9UI43 246 aaKnown RBP14.03□□□□□ -0.16
CPSF1-213ENST00000620219 CD3GP09693 182 aa14.03□□□□□ -0.16
CPSF1-213ENST00000620219 Q0VFX4 171 aa14.03□□□□□ -0.16
CPSF1-213ENST00000620219 TMEM69Q5SWH9 247 aa14.03□□□□□ -0.16
CPSF1-213ENST00000620219 ZNF454Q8N9F8 522 aa14.03□□□□□ -0.16
CPSF1-213ENST00000620219 TMEM41AQ96HV5 264 aa14.03□□□□□ -0.16
CPSF1-213ENST00000620219 NEDD4LQ96PU5 975 aa14.03□□□□□ -0.16
CPSF1-213ENST00000620219 GDF2Q9UK05 429 aaPredicted RBP14.03□□□□□ -0.16
CPSF1-213ENST00000620219 LRP12Q9Y561 859 aa14.03□□□□□ -0.16
CPSF1-213ENST00000620219 A0A0G2JMP0 313 aa14.02□□□□□ -0.16
CPSF1-213ENST00000620219 A0A0X1KG70 313 aa14.02□□□□□ -0.16
CPSF1-213ENST00000620219 DHHO43323 396 aa14.02□□□□□ -0.16
CPSF1-213ENST00000620219 SULT1C4O75897 302 aa14.02□□□□□ -0.16
CPSF1-213ENST00000620219 CELA3AP09093 270 aa14.02□□□□□ -0.16
CPSF1-213ENST00000620219 SPNP16150 400 aa14.02□□□□□ -0.16
CPSF1-213ENST00000620219 ALOX5APP20292 161 aa14.02□□□□□ -0.16
CPSF1-213ENST00000620219 AGFG1P52594 562 aaKnown RBP14.02□□□□□ -0.16
CPSF1-213ENST00000620219 SOX8P57073 446 aa14.02□□□□□ -0.16
CPSF1-213ENST00000620219 TOMM5Q8N4H5 51 aa14.02□□□□□ -0.16
CPSF1-213ENST00000620219 OR4M2Q8NGB6 313 aa14.02□□□□□ -0.16
CPSF1-213ENST00000620219 OR9K2Q8NGE7 335 aa14.02□□□□□ -0.16
CPSF1-213ENST00000620219 POC1BQ8TC44 478 aa14.02□□□□□ -0.16
CPSF1-213ENST00000620219 LGALS14Q8TCE9 139 aa14.02□□□□□ -0.16
CPSF1-213ENST00000620219 GCDHQ92947 438 aaPredicted RBP14.02□□□□□ -0.16
CPSF1-213ENST00000620219 CGGBP1Q9UFW8 167 aaPredicted RBP14.02□□□□□ -0.16
CPSF1-213ENST00000620219 COL4A2P08572 1712 aa14.02□□□□□ -0.16
CPSF1-213ENST00000620219 CYC1P08574 325 aa14.02□□□□□ -0.16
CPSF1-213ENST00000620219 ELK1P19419 428 aa14.02□□□□□ -0.16
CPSF1-213ENST00000620219 SLC2A5P22732 501 aa14.02□□□□□ -0.16
CPSF1-213ENST00000620219 NKX2-5P52952 324 aaPredicted RBP14.02□□□□□ -0.16
CPSF1-213ENST00000620219 CEACAM16Q2WEN9 425 aa14.02□□□□□ -0.16
CPSF1-213ENST00000620219 RFT1Q96AA3 541 aa14.02□□□□□ -0.16
CPSF1-213ENST00000620219 EMC3Q9P0I2 261 aa14.02□□□□□ -0.16
CPSF1-213ENST00000620219 MEIS3P1A6NDR6 274 aa14.02□□□□□ -0.17
CPSF1-213ENST00000620219 CCNKO75909 580 aa14.02□□□□□ -0.17
CPSF1-213ENST00000620219 POU3F4P49335 361 aa14.02□□□□□ -0.17
CPSF1-213ENST00000620219 MRPL28Q13084 256 aaKnown RBP14.02□□□□□ -0.17
CPSF1-213ENST00000620219 TMEM244Q5VVB8 128 aa14.02□□□□□ -0.17
CPSF1-213ENST00000620219 OR51E1Q8TCB6 317 aa14.02□□□□□ -0.17
CPSF1-213ENST00000620219 C1QTNF6Q9BXI9 259 aa14.02□□□□□ -0.17
CPSF1-213ENST00000620219 ZNF432O94892 652 aa14.02□□□□□ -0.17
CPSF1-213ENST00000620219 ADH6P28332 368 aa14.02□□□□□ -0.17
CPSF1-213ENST00000620219 RPS4XP62701 263 aaKnown RBP14.02□□□□□ -0.17
CPSF1-213ENST00000620219 OR10AC1Q8NH08 325 aa14.02□□□□□ -0.17
CPSF1-213ENST00000620219 OR8S1Q8NH09 359 aa14.02□□□□□ -0.17
CPSF1-213ENST00000620219 SPTSSAQ969W0 71 aa14.02□□□□□ -0.17
CPSF1-213ENST00000620219 ING3Q9NXR8 418 aa14.02□□□□□ -0.17
CPSF1-213ENST00000620219 KLHL9Q9P2J3 617 aa14.02□□□□□ -0.17
CPSF1-213ENST00000620219 B3GNT3Q9Y2A9 372 aa14.02□□□□□ -0.17
CPSF1-213ENST00000620219 SF3B6Q9Y3B4 125 aaKnown RBP14.02□□□□□ -0.17
CPSF1-213ENST00000620219 TRGV5A0A0B4J1U4 118 aa14.01□□□□□ -0.17
CPSF1-213ENST00000620219 TRIM64BA6NI03 449 aa14.01□□□□□ -0.17
CPSF1-213ENST00000620219 RLN1P04808 185 aa14.01□□□□□ -0.17
CPSF1-213ENST00000620219 LIPCP11150 499 aa14.01□□□□□ -0.17
CPSF1-213ENST00000620219 MSR1P21757 451 aa14.01□□□□□ -0.17
CPSF1-213ENST00000620219 TGM1P22735 817 aa14.01□□□□□ -0.17
CPSF1-213ENST00000620219 MTNR1BP49286 362 aa14.01□□□□□ -0.17
CPSF1-213ENST00000620219 OR8B4Q96RC9 309 aa14.01□□□□□ -0.17
CPSF1-213ENST00000620219 CPNE5Q9HCH3 593 aa14.01□□□□□ -0.17
CPSF1-213ENST00000620219 ZNF71Q9NQZ8 489 aaPredicted RBP14.01□□□□□ -0.17
CPSF1-213ENST00000620219 HAO2Q9NYQ3 351 aa14.01□□□□□ -0.17
CPSF1-213ENST00000620219 TRAV6A0A075B6T7 132 aa14.01□□□□□ -0.17
CPSF1-213ENST00000620219 LOC107986453A0A1B0GWG9 222 aa14.01□□□□□ -0.17
CPSF1-213ENST00000620219 NOTOA8MTQ0 251 aa14.01□□□□□ -0.17
CPSF1-213ENST00000620219 GMFBP60983 142 aa14.01□□□□□ -0.17
CPSF1-213ENST00000620219 OXA1LQ15070 435 aa14.01□□□□□ -0.17
CPSF1-213ENST00000620219 YIF1BQ5BJH7 314 aa14.01□□□□□ -0.17
CPSF1-213ENST00000620219 WDR38Q5JTN6 314 aa14.01□□□□□ -0.17
CPSF1-213ENST00000620219 ZNF517Q6ZMY9 492 aaPredicted RBP14.01□□□□□ -0.17
CPSF1-213ENST00000620219 NEK7Q8TDX7 302 aa14.01□□□□□ -0.17
CPSF1-213ENST00000620219 LOC100509620A0A075B734 347 aa14.01□□□□□ -0.17
CPSF1-213ENST00000620219 EFNA2O43921 213 aa14.01□□□□□ -0.17
CPSF1-213ENST00000620219 SLC19A2O60779 497 aa14.01□□□□□ -0.17
CPSF1-213ENST00000620219 CCDC190Q86UF4 302 aa14.01□□□□□ -0.17
CPSF1-213ENST00000620219 AKAP14Q86UN6 197 aa14.01□□□□□ -0.17
CPSF1-213ENST00000620219 OR4M1Q8NGD0 313 aa14.01□□□□□ -0.17
CPSF1-213ENST00000620219 AKR7LQ8NHP1 331 aa14.01□□□□□ -0.17
CPSF1-213ENST00000620219 MNTQ99583 582 aa14.01□□□□□ -0.17
CPSF1-213ENST00000620219 TTTY12Q9BZ98 90 aa14.01□□□□□ -0.17
CPSF1-213ENST00000620219 ISYNA1Q9NPH2 558 aa14.01□□□□□ -0.17
CPSF1-213ENST00000620219 GPR171O14626 319 aa14□□□□□ -0.17
CPSF1-213ENST00000620219 GATBO75879 557 aaKnown RBP14□□□□□ -0.17
CPSF1-213ENST00000620219 SNU13P55769 128 aaKnown RBP14□□□□□ -0.17
CPSF1-213ENST00000620219 RAB11BQ15907 218 aa14□□□□□ -0.17
CPSF1-213ENST00000620219 C3P1Q6ZMU1 363 aa14□□□□□ -0.17
CPSF1-213ENST00000620219 FAM122BQ7Z309 247 aa14□□□□□ -0.17
CPSF1-213ENST00000620219 GLCCI1Q86VQ1 547 aa14□□□□□ -0.17
CPSF1-213ENST00000620219 OR51D1Q8NGF3 324 aa14□□□□□ -0.17
CPSF1-213ENST00000620219 SLC22A4Q9H015 551 aa14□□□□□ -0.17
CPSF1-213ENST00000620219 RNF32Q9H0A6 362 aa14□□□□□ -0.17
CPSF1-213ENST00000620219 SP1P08047 785 aa14□□□□□ -0.17
Retrieved 100 of 20,778 RNA–protein pairs in 26.4 ms