RNA–Protein interactions for RNA: ENST00000600868.5

UPF1-211, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 3

Gene UPF1, Length 580 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-211ENST00000600868 ZNF503-AS2A6NEH8 195 aa12.52□□□□□ -0.41
UPF1-211ENST00000600868 ZNF670-ZNF695F2Z2N8 137 aa12.52□□□□□ -0.41
UPF1-211ENST00000600868 PHYHO14832 338 aa12.52□□□□□ -0.41
UPF1-211ENST00000600868 IGHA1P01876 353 aa12.52□□□□□ -0.41
UPF1-211ENST00000600868 LYNP07948 512 aa12.52□□□□□ -0.41
UPF1-211ENST00000600868 PATE4P0C8F1 98 aa12.52□□□□□ -0.41
UPF1-211ENST00000600868 HCCSP53701 268 aa12.52□□□□□ -0.41
UPF1-211ENST00000600868 RAB1AP62820 205 aa12.52□□□□□ -0.41
UPF1-211ENST00000600868 ACTC1P68032 377 aa12.52□□□□□ -0.41
UPF1-211ENST00000600868 ACTA1P68133 377 aa12.52□□□□□ -0.41
UPF1-211ENST00000600868 SLC35A2P78381 396 aa12.52□□□□□ -0.41
UPF1-211ENST00000600868 PIGFQ07326 219 aa12.52□□□□□ -0.41
UPF1-211ENST00000600868 ST3GAL4Q11206 333 aa12.52□□□□□ -0.41
UPF1-211ENST00000600868 TAB1Q15750 504 aa12.52□□□□□ -0.41
UPF1-211ENST00000600868 CORO6Q6QEF8 472 aa12.52□□□□□ -0.41
UPF1-211ENST00000600868 AHSA2Q719I0 299 aa12.52□□□□□ -0.41
UPF1-211ENST00000600868 DCXRQ7Z4W1 244 aa12.52□□□□□ -0.41
UPF1-211ENST00000600868 LINC00346Q8IVM7 164 aa12.52□□□□□ -0.41
UPF1-211ENST00000600868 ACBD7Q8N6N7 88 aa12.52□□□□□ -0.41
UPF1-211ENST00000600868 FAM169BQ8N8A8 192 aa12.52□□□□□ -0.41
UPF1-211ENST00000600868 OR10H4Q8NGA5 316 aa12.52□□□□□ -0.41
UPF1-211ENST00000600868 OR52N5Q8NH56 324 aa12.52□□□□□ -0.41
UPF1-211ENST00000600868 ST7LQ8TDW4 575 aa12.52□□□□□ -0.41
UPF1-211ENST00000600868 SMAP2Q8WU79 429 aaPredicted RBP12.52□□□□□ -0.41
UPF1-211ENST00000600868 MYDGFQ969H8 173 aa12.52□□□□□ -0.41
UPF1-211ENST00000600868 MUCL1Q96DR8 90 aa12.52□□□□□ -0.41
UPF1-211ENST00000600868 TMEM80Q96HE8 168 aa12.52□□□□□ -0.41
UPF1-211ENST00000600868 MAP6Q96JE9 813 aa12.52□□□□□ -0.41
UPF1-211ENST00000600868 RHNO1Q9BSD3 238 aa12.52□□□□□ -0.41
UPF1-211ENST00000600868 OR2H1Q9GZK4 316 aa12.52□□□□□ -0.41
UPF1-211ENST00000600868 RNF121Q9H920 327 aa12.52□□□□□ -0.41
UPF1-211ENST00000600868 INPP5EQ9NRR6 644 aa12.52□□□□□ -0.41
UPF1-211ENST00000600868 DIMT1Q9UNQ2 313 aaKnown RBP12.52□□□□□ -0.41
UPF1-211ENST00000600868 MYRFQ9Y2G1 1151 aa12.52□□□□□ -0.41
UPF1-211ENST00000600868 HCFC1P51610 2035 aa12.52□□□□□ -0.41
UPF1-211ENST00000600868 CACNA1CQ13936 2221 aa12.52□□□□□ -0.41
UPF1-211ENST00000600868 A0A1W2PQL4 384 aaPredicted RBP12.51□□□□□ -0.41
UPF1-211ENST00000600868 A0A1W2PR80 420 aa12.51□□□□□ -0.41
UPF1-211ENST00000600868 PTGES3LE9PB15 166 aa12.51□□□□□ -0.41
UPF1-211ENST00000600868 RER1O15258 196 aa12.51□□□□□ -0.41
UPF1-211ENST00000600868 RAB36O95755 333 aa12.51□□□□□ -0.41
UPF1-211ENST00000600868 RNF224P0DH78 156 aa12.51□□□□□ -0.41
UPF1-211ENST00000600868 CBR1P16152 277 aa12.51□□□□□ -0.41
UPF1-211ENST00000600868 GRNP28799 593 aaKnown RBP12.51□□□□□ -0.41
UPF1-211ENST00000600868 PEX19P40855 299 aa12.51□□□□□ -0.41
UPF1-211ENST00000600868 CHN2P52757 468 aa12.51□□□□□ -0.41
UPF1-211ENST00000600868 GABARAPL2P60520 117 aa12.51□□□□□ -0.41
UPF1-211ENST00000600868 TUBA1BP68363 451 aa12.51□□□□□ -0.41
UPF1-211ENST00000600868 TUBA4AP68366 448 aa12.51□□□□□ -0.41
UPF1-211ENST00000600868 PSG4Q00888 419 aa12.51□□□□□ -0.41
UPF1-211ENST00000600868 EIF2B1Q14232 305 aaKnown RBP12.51□□□□□ -0.41
UPF1-211ENST00000600868 PPA1Q15181 289 aa12.51□□□□□ -0.41
UPF1-211ENST00000600868 GSG1Q2KHT4 349 aa12.51□□□□□ -0.41
UPF1-211ENST00000600868 C3orf36Q3SXR2 165 aa12.51□□□□□ -0.41
UPF1-211ENST00000600868 CCDC92Q53HC0 331 aaPredicted RBP12.51□□□□□ -0.41
UPF1-211ENST00000600868 CFAP77Q6ZQR2 320 aa12.51□□□□□ -0.41
UPF1-211ENST00000600868 TUBA1AQ71U36 451 aa12.51□□□□□ -0.41
UPF1-211ENST00000600868 RHOUQ7L0Q8 258 aa12.51□□□□□ -0.41
UPF1-211ENST00000600868 MDP1Q86V88 176 aa12.51□□□□□ -0.41
UPF1-211ENST00000600868 STX19Q8N4C7 294 aa12.51□□□□□ -0.41
UPF1-211ENST00000600868 THEM6Q8WUY1 208 aa12.51□□□□□ -0.41
UPF1-211ENST00000600868 ASB17Q8WXJ9 295 aa12.51□□□□□ -0.41
UPF1-211ENST00000600868 ZNF75AQ96N20 296 aa12.51□□□□□ -0.41
UPF1-211ENST00000600868 WFIKKN1Q96NZ8 548 aa12.51□□□□□ -0.41
UPF1-211ENST00000600868 NR1H4Q96RI1 486 aaPredicted RBP12.51□□□□□ -0.41
UPF1-211ENST00000600868 COPS4Q9BT78 406 aa12.51□□□□□ -0.41
UPF1-211ENST00000600868 ABHD6Q9BV23 337 aa12.51□□□□□ -0.41
UPF1-211ENST00000600868 WNT5BQ9H1J7 359 aa12.51□□□□□ -0.41
UPF1-211ENST00000600868 NOX3Q9HBY0 568 aa12.51□□□□□ -0.41
UPF1-211ENST00000600868 PNRC2Q9NPJ4 139 aaKnown RBP12.51□□□□□ -0.41
UPF1-211ENST00000600868 NPDC1Q9NQX5 325 aaPredicted RBP12.51□□□□□ -0.41
UPF1-211ENST00000600868 PAK1IP1Q9NWT1 392 aaPredicted RBP12.51□□□□□ -0.41
UPF1-211ENST00000600868 CRNNQ9UBG3 495 aaPredicted RBP12.51□□□□□ -0.41
UPF1-211ENST00000600868 NDRG3Q9UGV2 375 aa12.51□□□□□ -0.41
UPF1-211ENST00000600868 FBXL3Q9UKT7 428 aa12.51□□□□□ -0.41
UPF1-211ENST00000600868 COPS3Q9UNS2 423 aa12.51□□□□□ -0.41
UPF1-211ENST00000600868 KLHDC2Q9Y2U9 406 aa12.51□□□□□ -0.41
UPF1-211ENST00000600868 KLF2Q9Y5W3 355 aaPredicted RBP12.51□□□□□ -0.41
UPF1-211ENST00000600868 DAPL1A0PJW8 107 aa12.5□□□□□ -0.41
UPF1-211ENST00000600868 TRIM64A6NGJ6 449 aa12.5□□□□□ -0.41
UPF1-211ENST00000600868 SGCEO43556 437 aa12.5□□□□□ -0.41
UPF1-211ENST00000600868 MRPS14O60783 128 aaKnown RBP12.5□□□□□ -0.41
UPF1-211ENST00000600868 IGKV3-15P01624 115 aa12.5□□□□□ -0.41
UPF1-211ENST00000600868 CDK1P06493 297 aa12.5□□□□□ -0.41
UPF1-211ENST00000600868 COX5BP10606 129 aa12.5□□□□□ -0.41
UPF1-211ENST00000600868 PLP2Q04941 152 aa12.5□□□□□ -0.41
UPF1-211ENST00000600868 EGR3Q06889 387 aa12.5□□□□□ -0.41
UPF1-211ENST00000600868 ECH1Q13011 328 aa12.5□□□□□ -0.41
UPF1-211ENST00000600868 RAB35Q15286 201 aa12.5□□□□□ -0.41
UPF1-211ENST00000600868 KCTD21Q4G0X4 260 aa12.5□□□□□ -0.41
UPF1-211ENST00000600868 PABPC1L2AQ5JQF8 200 aa12.5□□□□□ -0.41
UPF1-211ENST00000600868 ELFN2Q5R3F8 820 aa12.5□□□□□ -0.41
UPF1-211ENST00000600868 KCTD18Q6PI47 426 aaPredicted RBP12.5□□□□□ -0.41
UPF1-211ENST00000600868 C22orf34Q6ZV56 151 aa12.5□□□□□ -0.41
UPF1-211ENST00000600868 ALDH16A1Q8IZ83 802 aa12.5□□□□□ -0.41
UPF1-211ENST00000600868 OR10S1Q8NGN2 331 aa12.5□□□□□ -0.41
UPF1-211ENST00000600868 RNF133Q8WVZ7 376 aa12.5□□□□□ -0.41
UPF1-211ENST00000600868 SLAMF6Q96DU3 332 aa12.5□□□□□ -0.41
UPF1-211ENST00000600868 SIGLEC11Q96RL6 698 aa12.5□□□□□ -0.41
UPF1-211ENST00000600868 AMELYQ99218 206 aa12.5□□□□□ -0.41
Retrieved 100 of 20,778 RNA–protein pairs in 37.6 ms