RNA–Protein interactions for RNA: ENST00000599848.5

UPF1-207, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 1 (best) BASIC

Gene UPF1, Length 5,311 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-207ENST00000599848 CEACAM5P06731 702 aa18.65■□□□□ 0.58
UPF1-207ENST00000599848 CD3EP07766 207 aa18.65■□□□□ 0.58
UPF1-207ENST00000599848 ELP2Q6IA86 826 aa18.65■□□□□ 0.58
UPF1-207ENST00000599848 C3orf30Q96M34 536 aa18.65■□□□□ 0.58
UPF1-207ENST00000599848 QRSL1Q9H0R6 528 aaKnown RBP18.65■□□□□ 0.58
UPF1-207ENST00000599848 ACOD1A6NK06 481 aa18.65■□□□□ 0.58
UPF1-207ENST00000599848 SOD1P00441 154 aa18.65■□□□□ 0.58
UPF1-207ENST00000599848 TMEM255BQ8WV15 326 aa18.65■□□□□ 0.58
UPF1-207ENST00000599848 FGF17O60258 216 aa18.65■□□□□ 0.58
UPF1-207ENST00000599848 OGFOD3Q6PK18 319 aa18.65■□□□□ 0.58
UPF1-207ENST00000599848 ANGPTL5Q86XS5 388 aa18.65■□□□□ 0.58
UPF1-207ENST00000599848 TXNIPQ9H3M7 391 aa18.65■□□□□ 0.58
UPF1-207ENST00000599848 ACER3Q9NUN7 267 aa18.65■□□□□ 0.58
UPF1-207ENST00000599848 RGPD5Q99666 1765 aa18.65■□□□□ 0.58
UPF1-207ENST00000599848 CAPNS1P04632 268 aa18.64■□□□□ 0.58
UPF1-207ENST00000599848 FBP1P09467 338 aa18.64■□□□□ 0.58
UPF1-207ENST00000599848 TFPTP0C1Z6 253 aa18.64■□□□□ 0.58
UPF1-207ENST00000599848 ELK1P19419 428 aa18.64■□□□□ 0.58
UPF1-207ENST00000599848 HTRA4P83105 476 aaPredicted RBP18.64■□□□□ 0.58
UPF1-207ENST00000599848 INSM1Q01101 510 aaPredicted RBP18.64■□□□□ 0.58
UPF1-207ENST00000599848 FAM90A27PA6NNH2 459 aa18.64■□□□□ 0.57
UPF1-207ENST00000599848 AGFG2O95081 481 aa18.64■□□□□ 0.57
UPF1-207ENST00000599848 SPDEFO95238 335 aa18.64■□□□□ 0.57
UPF1-207ENST00000599848 DUSP2Q05923 314 aa18.64■□□□□ 0.57
UPF1-207ENST00000599848 UBQLN3Q9H347 655 aa18.64■□□□□ 0.57
UPF1-207ENST00000599848 LAMB4A4D0S4 1761 aa18.64■□□□□ 0.57
UPF1-207ENST00000599848 NUDT19A8MXV4 375 aa18.64■□□□□ 0.57
UPF1-207ENST00000599848 PSMB3P49720 205 aa18.64■□□□□ 0.57
UPF1-207ENST00000599848 AQP6Q13520 282 aa18.64■□□□□ 0.57
UPF1-207ENST00000599848 TIGITQ495A1 244 aa18.64■□□□□ 0.57
UPF1-207ENST00000599848 APOOLQ6UXV4 268 aa18.64■□□□□ 0.57
UPF1-207ENST00000599848 NPEPL1Q8NDH3 523 aa18.64■□□□□ 0.57
UPF1-207ENST00000599848 TSLPQ969D9 159 aa18.64■□□□□ 0.57
UPF1-207ENST00000599848 LOXL4Q96JB6 756 aa18.64■□□□□ 0.57
UPF1-207ENST00000599848 SMIM3Q9BZL3 60 aa18.64■□□□□ 0.57
UPF1-207ENST00000599848 SIAEQ9HAT2 523 aa18.64■□□□□ 0.57
UPF1-207ENST00000599848 A0A1W2PPC1 479 aa18.64■□□□□ 0.57
UPF1-207ENST00000599848 UPK1BO75841 260 aa18.64■□□□□ 0.57
UPF1-207ENST00000599848 FABP6P51161 128 aa18.64■□□□□ 0.57
UPF1-207ENST00000599848 C17orf107Q6ZR85 190 aa18.64■□□□□ 0.57
UPF1-207ENST00000599848 OR1M1Q8NGA1 313 aa18.64■□□□□ 0.57
UPF1-207ENST00000599848 Q96M85 177 aa18.64■□□□□ 0.57
UPF1-207ENST00000599848 CYSLTR2Q9NS75 346 aa18.64■□□□□ 0.57
UPF1-207ENST00000599848 AMDHD2Q9Y303 409 aa18.64■□□□□ 0.57
UPF1-207ENST00000599848 TXNL1O43396 289 aa18.64■□□□□ 0.57
UPF1-207ENST00000599848 GOSR1O95249 250 aa18.64■□□□□ 0.57
UPF1-207ENST00000599848 MRPS34P82930 218 aaKnown RBP18.64■□□□□ 0.57
UPF1-207ENST00000599848 MITD1Q8WV92 249 aa18.64■□□□□ 0.57
UPF1-207ENST00000599848 RND1Q92730 232 aa18.64■□□□□ 0.57
UPF1-207ENST00000599848 RCE1Q9Y256 329 aa18.64■□□□□ 0.57
UPF1-207ENST00000599848 MEOX1P50221 254 aa18.63■□□□□ 0.57
UPF1-207ENST00000599848 SAV1Q9H4B6 383 aaPredicted RBP18.63■□□□□ 0.57
UPF1-207ENST00000599848 ZNF816-ZNF321PA0A0X1KG74 233 aa18.63■□□□□ 0.57
UPF1-207ENST00000599848 RAB19A4D1S5 217 aa18.63■□□□□ 0.57
UPF1-207ENST00000599848 GJB3O75712 270 aa18.63■□□□□ 0.57
UPF1-207ENST00000599848 EGR3Q06889 387 aa18.63■□□□□ 0.57
UPF1-207ENST00000599848 TRMT12Q53H54 448 aaKnown RBP18.63■□□□□ 0.57
UPF1-207ENST00000599848 GPR173Q9NS66 373 aa18.63■□□□□ 0.57
UPF1-207ENST00000599848 SLAMF8Q9P0V8 285 aa18.63■□□□□ 0.57
UPF1-207ENST00000599848 NWD2Q9ULI1 1742 aa18.63■□□□□ 0.57
UPF1-207ENST00000599848 PAPPA2Q9BXP8 1791 aa18.63■□□□□ 0.57
UPF1-207ENST00000599848 TMEM200CA6NKL6 621 aa18.63■□□□□ 0.57
UPF1-207ENST00000599848 A8MV72 311 aaPredicted RBP18.63■□□□□ 0.57
UPF1-207ENST00000599848 ZNF705FA8MVS1 300 aaPredicted RBP18.63■□□□□ 0.57
UPF1-207ENST00000599848 HS3ST1O14792 307 aa18.63■□□□□ 0.57
UPF1-207ENST00000599848 ICOSLGO75144 302 aa18.63■□□□□ 0.57
UPF1-207ENST00000599848 ZNF705DP0CH99 300 aaPredicted RBP18.63■□□□□ 0.57
UPF1-207ENST00000599848 ZNF705BP0CI00 300 aaPredicted RBP18.63■□□□□ 0.57
UPF1-207ENST00000599848 RPS2P15880 293 aaKnown RBP18.63■□□□□ 0.57
UPF1-207ENST00000599848 OR10A3P58181 314 aa18.63■□□□□ 0.57
UPF1-207ENST00000599848 ACKR1Q16570 336 aa18.63■□□□□ 0.57
UPF1-207ENST00000599848 TCTN3Q6NUS6 607 aa18.63■□□□□ 0.57
UPF1-207ENST00000599848 C16orf52Q8NHV5 167 aa18.63■□□□□ 0.57
UPF1-207ENST00000599848 DPF1Q92782 380 aa18.63■□□□□ 0.57
UPF1-207ENST00000599848 DHRS9Q9BPW9 319 aa18.63■□□□□ 0.57
UPF1-207ENST00000599848 ASH2LQ9UBL3 628 aa18.63■□□□□ 0.57
UPF1-207ENST00000599848 TMEM127O75204 238 aa18.63■□□□□ 0.57
UPF1-207ENST00000599848 GFERP55789 205 aa18.63■□□□□ 0.57
UPF1-207ENST00000599848 ACVR1Q04771 509 aa18.63■□□□□ 0.57
UPF1-207ENST00000599848 OR1J1Q8NGS3 322 aa18.63■□□□□ 0.57
UPF1-207ENST00000599848 PAX6P26367 422 aa18.62■□□□□ 0.57
UPF1-207ENST00000599848 LCMT2O60294 686 aaKnown RBP18.62■□□□□ 0.57
UPF1-207ENST00000599848 SNAPINO95295 136 aa18.62■□□□□ 0.57
UPF1-207ENST00000599848 NUDT7P0C024 238 aa18.62■□□□□ 0.57
UPF1-207ENST00000599848 CALCBP10092 127 aa18.62■□□□□ 0.57
UPF1-207ENST00000599848 ADRA2CP18825 462 aa18.62■□□□□ 0.57
UPF1-207ENST00000599848 PMPCAQ10713 525 aa18.62■□□□□ 0.57
UPF1-207ENST00000599848 GLYATL3Q5SZD4 288 aa18.62■□□□□ 0.57
UPF1-207ENST00000599848 OR5M1Q8NGP8 315 aa18.62■□□□□ 0.57
UPF1-207ENST00000599848 A0A1W2PR48 441 aa18.62■□□□□ 0.57
UPF1-207ENST00000599848 GUSBP08236 651 aa18.62■□□□□ 0.57
UPF1-207ENST00000599848 TMEM11P17152 192 aa18.62■□□□□ 0.57
UPF1-207ENST00000599848 PSMB1P20618 241 aaKnown RBP18.62■□□□□ 0.57
UPF1-207ENST00000599848 NXPH1P58417 271 aa18.62■□□□□ 0.57
UPF1-207ENST00000599848 GSG1Q2KHT4 349 aa18.62■□□□□ 0.57
UPF1-207ENST00000599848 ZNF546Q86UE3 836 aa18.62■□□□□ 0.57
UPF1-207ENST00000599848 OIT3Q8WWZ8 545 aa18.62■□□□□ 0.57
UPF1-207ENST00000599848 OCIAD1Q9NX40 245 aa18.62■□□□□ 0.57
UPF1-207ENST00000599848 GMPR2Q9P2T1 348 aaKnown RBP18.62■□□□□ 0.57
UPF1-207ENST00000599848 EMCNQ9ULC0 261 aa18.62■□□□□ 0.57
Retrieved 100 of 20,778 RNA–protein pairs in 21.1 ms