RNA–Protein interactions for RNA: ENST00000599833.1

SHKBP1-221, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 2

Gene SHKBP1, Length 761 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-221ENST00000599833 RSPO1Q2MKA7 263 aaPredicted RBP16.79■□□□□ 0.28
SHKBP1-221ENST00000599833 KRTAP27-1Q3LI81 207 aa16.79■□□□□ 0.28
SHKBP1-221ENST00000599833 SLC27A4Q6P1M0 643 aa16.79■□□□□ 0.28
SHKBP1-221ENST00000599833 VHLLQ6RSH7 139 aa16.79■□□□□ 0.28
SHKBP1-221ENST00000599833 ZNF101Q8IZC7 436 aa16.79■□□□□ 0.28
SHKBP1-221ENST00000599833 FBXL14Q8N1E6 418 aa16.79■□□□□ 0.28
SHKBP1-221ENST00000599833 SVOPLQ8N434 492 aa16.79■□□□□ 0.28
SHKBP1-221ENST00000599833 WFDC11Q8NEX6 87 aa16.79■□□□□ 0.28
SHKBP1-221ENST00000599833 DOK1Q99704 481 aa16.79■□□□□ 0.28
SHKBP1-221ENST00000599833 PLK3Q9H4B4 646 aa16.79■□□□□ 0.28
SHKBP1-221ENST00000599833 CXorf56Q9H5V9 222 aa16.79■□□□□ 0.28
SHKBP1-221ENST00000599833 PNRC2Q9NPJ4 139 aaKnown RBP16.79■□□□□ 0.28
SHKBP1-221ENST00000599833 FAIMQ9NVQ4 179 aa16.79■□□□□ 0.28
SHKBP1-221ENST00000599833 MED13LQ71F56 2210 aa16.79■□□□□ 0.28
SHKBP1-221ENST00000599833 FAM183AA6NL82 134 aa16.78■□□□□ 0.28
SHKBP1-221ENST00000599833 E9PQ18 207 aa16.78■□□□□ 0.28
SHKBP1-221ENST00000599833 H7C417 338 aa16.78■□□□□ 0.28
SHKBP1-221ENST00000599833 RER1O15258 196 aa16.78■□□□□ 0.28
SHKBP1-221ENST00000599833 IGHV4-39P01824 125 aa16.78■□□□□ 0.28
SHKBP1-221ENST00000599833 GYPBP06028 91 aa16.78■□□□□ 0.28
SHKBP1-221ENST00000599833 COX5BP10606 129 aa16.78■□□□□ 0.28
SHKBP1-221ENST00000599833 ZNF23P17027 643 aa16.78■□□□□ 0.28
SHKBP1-221ENST00000599833 SPI1P17947 270 aa16.78■□□□□ 0.28
SHKBP1-221ENST00000599833 POU1F1P28069 291 aa16.78■□□□□ 0.28
SHKBP1-221ENST00000599833 PCSK6P29122 969 aa16.78■□□□□ 0.28
SHKBP1-221ENST00000599833 SERPINF1P36955 418 aa16.78■□□□□ 0.28
SHKBP1-221ENST00000599833 ARHGDIAP52565 204 aa16.78■□□□□ 0.28
SHKBP1-221ENST00000599833 CRISP1P54107 249 aa16.78■□□□□ 0.28
SHKBP1-221ENST00000599833 PCBD1P61457 104 aa16.78■□□□□ 0.28
SHKBP1-221ENST00000599833 ERVS71-1P61550 626 aa16.78■□□□□ 0.28
SHKBP1-221ENST00000599833 EFNB1P98172 346 aa16.78■□□□□ 0.28
SHKBP1-221ENST00000599833 TEKQ02763 1124 aa16.78■□□□□ 0.28
SHKBP1-221ENST00000599833 GLO1Q04760 184 aa16.78■□□□□ 0.28
SHKBP1-221ENST00000599833 PCK2Q16822 640 aa16.78■□□□□ 0.28
SHKBP1-221ENST00000599833 SLC18B1Q6NT16 456 aa16.78■□□□□ 0.28
SHKBP1-221ENST00000599833 ZFP1Q6P2D0 407 aa16.78■□□□□ 0.28
SHKBP1-221ENST00000599833 DNM1P46Q6ZS02 220 aa16.78■□□□□ 0.28
SHKBP1-221ENST00000599833 OR51L1Q8NGJ5 315 aa16.78■□□□□ 0.28
SHKBP1-221ENST00000599833 CACNG6Q9BXT2 260 aa16.78■□□□□ 0.28
SHKBP1-221ENST00000599833 MRPL37Q9BZE1 423 aaKnown RBP16.78■□□□□ 0.28
SHKBP1-221ENST00000599833 KCNN2Q9H2S1 579 aa16.78■□□□□ 0.28
SHKBP1-221ENST00000599833 MED20Q9H944 212 aa16.78■□□□□ 0.28
SHKBP1-221ENST00000599833 ZNF556Q9HAH1 456 aa16.78■□□□□ 0.28
SHKBP1-221ENST00000599833 CYB5R1Q9UHQ9 305 aa16.78■□□□□ 0.28
SHKBP1-221ENST00000599833 GDF2Q9UK05 429 aaPredicted RBP16.78■□□□□ 0.28
SHKBP1-221ENST00000599833 IQCMA0A1B0GVH7 501 aa16.77■□□□□ 0.28
SHKBP1-221ENST00000599833 PTHP01270 115 aa16.77■□□□□ 0.28
SHKBP1-221ENST00000599833 GUCA1AP43080 201 aaPredicted RBP16.77■□□□□ 0.28
SHKBP1-221ENST00000599833 PLP2Q04941 152 aa16.77■□□□□ 0.28
SHKBP1-221ENST00000599833 SCRN3Q0VDG4 424 aa16.77■□□□□ 0.28
SHKBP1-221ENST00000599833 TBC1D28Q2M2D7 210 aa16.77■□□□□ 0.28
SHKBP1-221ENST00000599833 CORO6Q6QEF8 472 aa16.77■□□□□ 0.28
SHKBP1-221ENST00000599833 CFAP77Q6ZQR2 320 aa16.77■□□□□ 0.28
SHKBP1-221ENST00000599833 LRP11Q86VZ4 500 aa16.77■□□□□ 0.28
SHKBP1-221ENST00000599833 ZDHHC13Q8IUH4 622 aa16.77■□□□□ 0.28
SHKBP1-221ENST00000599833 OR10S1Q8NGN2 331 aa16.77■□□□□ 0.28
SHKBP1-221ENST00000599833 OR2T4Q8NH00 348 aa16.77■□□□□ 0.28
SHKBP1-221ENST00000599833 SLC7A6Q92536 515 aa16.77■□□□□ 0.28
SHKBP1-221ENST00000599833 MRPL24Q96A35 216 aaKnown RBP16.77■□□□□ 0.28
SHKBP1-221ENST00000599833 RAB3IPQ96QF0 476 aaPredicted RBP16.77■□□□□ 0.28
SHKBP1-221ENST00000599833 CIB1Q99828 191 aa16.77■□□□□ 0.28
SHKBP1-221ENST00000599833 OSBPL10Q9BXB5 764 aa16.77■□□□□ 0.28
SHKBP1-221ENST00000599833 S100A14Q9HCY8 104 aa16.77■□□□□ 0.28
SHKBP1-221ENST00000599833 HINT3Q9NQE9 182 aaKnown RBP16.77■□□□□ 0.28
SHKBP1-221ENST00000599833 MYEF2Q9P2K5 600 aaKnown RBP16.77■□□□□ 0.28
SHKBP1-221ENST00000599833 ZAR1LA6NP61 321 aa16.76■□□□□ 0.27
SHKBP1-221ENST00000599833 SGCEO43556 437 aa16.76■□□□□ 0.27
SHKBP1-221ENST00000599833 FAM157BP0CG42 384 aa16.76■□□□□ 0.27
SHKBP1-221ENST00000599833 SLC2A5P22732 501 aa16.76■□□□□ 0.27
SHKBP1-221ENST00000599833 APLNRP35414 380 aa16.76■□□□□ 0.27
SHKBP1-221ENST00000599833 RPS27P42677 84 aaKnown RBP16.76■□□□□ 0.27
SHKBP1-221ENST00000599833 UCP2P55851 309 aa16.76■□□□□ 0.27
SHKBP1-221ENST00000599833 ESRRGP62508 458 aa16.76■□□□□ 0.27
SHKBP1-221ENST00000599833 GABPB1Q06547 395 aaPredicted RBP16.76■□□□□ 0.27
SHKBP1-221ENST00000599833 PTGES3Q15185 160 aaKnown RBP16.76■□□□□ 0.27
SHKBP1-221ENST00000599833 Q5PR19 223 aa16.76■□□□□ 0.27
SHKBP1-221ENST00000599833 PRSS57Q6UWY2 283 aa16.76■□□□□ 0.27
SHKBP1-221ENST00000599833 RFPL4BQ6ZWI9 263 aa16.76■□□□□ 0.27
SHKBP1-221ENST00000599833 MAP6Q96JE9 813 aa16.76■□□□□ 0.27
SHKBP1-221ENST00000599833 WDR76Q9H967 626 aa16.76■□□□□ 0.27
SHKBP1-221ENST00000599833 MARCH7Q9H992 704 aa16.76■□□□□ 0.27
SHKBP1-221ENST00000599833 DLL4Q9NR61 685 aa16.76■□□□□ 0.27
SHKBP1-221ENST00000599833 COMMD3-BMI1R4GMX3 469 aa16.76■□□□□ 0.27
SHKBP1-221ENST00000599833 IGLV3-9A0A075B6K5 115 aa16.75■□□□□ 0.27
SHKBP1-221ENST00000599833 C5orf49A4QMS7 147 aa16.75■□□□□ 0.27
SHKBP1-221ENST00000599833 TVP23AA6NH52 213 aa16.75■□□□□ 0.27
SHKBP1-221ENST00000599833 SAC3D1A6NKF1 404 aa16.75■□□□□ 0.27
SHKBP1-221ENST00000599833 RIIAD1A6NNX1 92 aa16.75■□□□□ 0.27
SHKBP1-221ENST00000599833 B9A039 149 aa16.75■□□□□ 0.27
SHKBP1-221ENST00000599833 DOK2O60496 412 aa16.75■□□□□ 0.27
SHKBP1-221ENST00000599833 NGFP01138 241 aa16.75■□□□□ 0.27
SHKBP1-221ENST00000599833 ZNF250P15622 560 aa16.75■□□□□ 0.27
SHKBP1-221ENST00000599833 POLR2IP36954 125 aaKnown RBP16.75■□□□□ 0.27
SHKBP1-221ENST00000599833 ZSCAN2Q7Z7L9 614 aaPredicted RBP16.75■□□□□ 0.27
SHKBP1-221ENST00000599833 TGIF2LYQ8IUE0 185 aa16.75■□□□□ 0.27
SHKBP1-221ENST00000599833 LINC00346Q8IVM7 164 aa16.75■□□□□ 0.27
SHKBP1-221ENST00000599833 ZNF511Q8NB15 262 aa16.75■□□□□ 0.27
SHKBP1-221ENST00000599833 PROKR2Q8NFJ6 384 aa16.75■□□□□ 0.27
SHKBP1-221ENST00000599833 OR1J2Q8NGS2 313 aa16.75■□□□□ 0.27
SHKBP1-221ENST00000599833 TMUB1Q9BVT8 246 aa16.75■□□□□ 0.27
Retrieved 100 of 20,778 RNA–protein pairs in 25.1 ms