RNA–Protein interactions for RNA: ENST00000599342.5

VRK3-216, Transcript of vaccinia related kinase 3, humanhuman

TSL 3

Gene VRK3, Length 795 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3-216ENST00000599342 GSK3BP49841 420 aa8.32□□□□□ -1.08
VRK3-216ENST00000599342 TNFAIP6P98066 277 aaPredicted RBP8.32□□□□□ -1.08
VRK3-216ENST00000599342 KRR1Q13601 381 aaKnown RBP8.32□□□□□ -1.08
VRK3-216ENST00000599342 FHL1Q13642 323 aa8.32□□□□□ -1.08
VRK3-216ENST00000599342 MESTQ5EB52 335 aa8.32□□□□□ -1.08
VRK3-216ENST00000599342 FGD3Q5JSP0 725 aa8.32□□□□□ -1.08
VRK3-216ENST00000599342 DCAF12L2Q5VW00 463 aa8.32□□□□□ -1.08
VRK3-216ENST00000599342 TBPL2Q6SJ96 375 aa8.32□□□□□ -1.08
VRK3-216ENST00000599342 C12orf54Q6X4T0 127 aa8.32□□□□□ -1.08
VRK3-216ENST00000599342 TMPRSS11FQ6ZWK6 438 aa8.32□□□□□ -1.08
VRK3-216ENST00000599342 ZNF771Q7L3S4 317 aaPredicted RBP8.32□□□□□ -1.08
VRK3-216ENST00000599342 TREML1Q86YW5 311 aa8.32□□□□□ -1.08
VRK3-216ENST00000599342 FAM156AQ8NDB6 213 aa8.32□□□□□ -1.08
VRK3-216ENST00000599342 ST7LQ8TDW4 575 aa8.32□□□□□ -1.08
VRK3-216ENST00000599342 ZFAND2BQ8WV99 257 aa8.32□□□□□ -1.08
VRK3-216ENST00000599342 FAM46AQ96IP4 442 aaKnown RBP8.32□□□□□ -1.08
VRK3-216ENST00000599342 Q96M85 177 aa8.32□□□□□ -1.08
VRK3-216ENST00000599342 RERGLQ9H628 205 aa8.32□□□□□ -1.08
VRK3-216ENST00000599342 NMNAT1Q9HAN9 279 aaPredicted RBP8.32□□□□□ -1.08
VRK3-216ENST00000599342 MSL2Q9HCI7 577 aa8.32□□□□□ -1.08
VRK3-216ENST00000599342 EMC7Q9NPA0 242 aa8.32□□□□□ -1.08
VRK3-216ENST00000599342 G6PC2Q9NQR9 355 aa8.32□□□□□ -1.08
VRK3-216ENST00000599342 PLEK2Q9NYT0 353 aa8.32□□□□□ -1.08
VRK3-216ENST00000599342 UBAP1Q9NZ09 502 aa8.32□□□□□ -1.08
VRK3-216ENST00000599342 FBN3Q75N90 2809 aa8.32□□□□□ -1.08
VRK3-216ENST00000599342 LOC105371242A0A075B767 164 aa8.31□□□□□ -1.08
VRK3-216ENST00000599342 J3QLI3 93 aa8.31□□□□□ -1.08
VRK3-216ENST00000599342 SGCEO43556 437 aa8.31□□□□□ -1.08
VRK3-216ENST00000599342 DEAF1O75398 565 aaPredicted RBP8.31□□□□□ -1.08
VRK3-216ENST00000599342 GMNNO75496 209 aa8.31□□□□□ -1.08
VRK3-216ENST00000599342 RGS9O75916 674 aaPredicted RBP8.31□□□□□ -1.08
VRK3-216ENST00000599342 UBOX5O94941 541 aa8.31□□□□□ -1.08
VRK3-216ENST00000599342 PRSS23O95084 383 aa8.31□□□□□ -1.08
VRK3-216ENST00000599342 NDUFB2O95178 105 aa8.31□□□□□ -1.08
VRK3-216ENST00000599342 VENTXO95231 258 aa8.31□□□□□ -1.08
VRK3-216ENST00000599342 H1F0P07305 194 aaKnown RBP8.31□□□□□ -1.08
VRK3-216ENST00000599342 CD55P08174 381 aa8.31□□□□□ -1.08
VRK3-216ENST00000599342 ADH4P08319 380 aa8.31□□□□□ -1.08
VRK3-216ENST00000599342 NCK1P16333 377 aa8.31□□□□□ -1.08
VRK3-216ENST00000599342 TNFRSF1AP19438 455 aa8.31□□□□□ -1.08
VRK3-216ENST00000599342 EPHA1P21709 976 aa8.31□□□□□ -1.08
VRK3-216ENST00000599342 TUBG1P23258 451 aa8.31□□□□□ -1.08
VRK3-216ENST00000599342 SDHAP31040 664 aa8.31□□□□□ -1.08
VRK3-216ENST00000599342 ACTG1P63261 375 aa8.31□□□□□ -1.08
VRK3-216ENST00000599342 AQP6Q13520 282 aa8.31□□□□□ -1.08
VRK3-216ENST00000599342 KRT72Q14CN4 511 aa8.31□□□□□ -1.08
VRK3-216ENST00000599342 TMEM255AQ5JRV8 349 aa8.31□□□□□ -1.08
VRK3-216ENST00000599342 GPR139Q6DWJ6 353 aa8.31□□□□□ -1.08
VRK3-216ENST00000599342 HACD2Q6Y1H2 254 aa8.31□□□□□ -1.08
VRK3-216ENST00000599342 FAM122BQ7Z309 247 aa8.31□□□□□ -1.08
VRK3-216ENST00000599342 KIRREL3-AS3Q8N7Y1 241 aaPredicted RBP8.31□□□□□ -1.08
VRK3-216ENST00000599342 SEMA6DQ8NFY4 1073 aa8.31□□□□□ -1.08
VRK3-216ENST00000599342 RASD2Q96D21 266 aa8.31□□□□□ -1.08
VRK3-216ENST00000599342 COG8Q96MW5 612 aa8.31□□□□□ -1.08
VRK3-216ENST00000599342 JMJD8Q96S16 334 aa8.31□□□□□ -1.08
VRK3-216ENST00000599342 TUBG2Q9NRH3 451 aa8.31□□□□□ -1.08
VRK3-216ENST00000599342 TBCCD1Q9NVR7 557 aa8.31□□□□□ -1.08
VRK3-216ENST00000599342 PURGQ9UJV8 347 aaKnown RBP8.31□□□□□ -1.08
VRK3-216ENST00000599342 PCDHB10Q9UN67 800 aa8.31□□□□□ -1.08
VRK3-216ENST00000599342 AURKCQ9UQB9 309 aa8.31□□□□□ -1.08
VRK3-216ENST00000599342 POLR1DQ9Y2S0 133 aa8.31□□□□□ -1.08
VRK3-216ENST00000599342 ENPP4Q9Y6X5 453 aa8.31□□□□□ -1.08
VRK3-216ENST00000599342 MXRA5Q9NR99 2828 aa8.31□□□□□ -1.08
VRK3-216ENST00000599342 A0A1W2PRQ8 180 aa8.3□□□□□ -1.08
VRK3-216ENST00000599342 TRIM77I1YAP6 450 aa8.3□□□□□ -1.08
VRK3-216ENST00000599342 SOCS2O14508 198 aa8.3□□□□□ -1.08
VRK3-216ENST00000599342 SLC16A7O60669 478 aa8.3□□□□□ -1.08
VRK3-216ENST00000599342 KHDRBS3O75525 346 aaKnown RBP8.3□□□□□ -1.08
VRK3-216ENST00000599342 SCG5P05408 212 aa8.3□□□□□ -1.08
VRK3-216ENST00000599342 CTLA4P16410 223 aa8.3□□□□□ -1.08
VRK3-216ENST00000599342 RHCEP18577 417 aa8.3□□□□□ -1.08
VRK3-216ENST00000599342 MDH1P40925 334 aaKnown RBP8.3□□□□□ -1.08
VRK3-216ENST00000599342 RPS6KA3P51812 740 aa8.3□□□□□ -1.08
VRK3-216ENST00000599342 PSG7Q13046 419 aa8.3□□□□□ -1.08
VRK3-216ENST00000599342 DGCR6Q14129 220 aa8.3□□□□□ -1.08
VRK3-216ENST00000599342 C1orf94Q6P1W5 598 aa8.3□□□□□ -1.08
VRK3-216ENST00000599342 C8orf82Q6P1X6 216 aaPredicted RBP8.3□□□□□ -1.08
VRK3-216ENST00000599342 DNM1P34Q6PK57 102 aa8.3□□□□□ -1.08
VRK3-216ENST00000599342 USP43Q70EL4 1123 aa8.3□□□□□ -1.08
VRK3-216ENST00000599342 VASH1Q7L8A9 365 aaPredicted RBP8.3□□□□□ -1.08
VRK3-216ENST00000599342 C1QL2Q7Z5L3 287 aa8.3□□□□□ -1.08
VRK3-216ENST00000599342 ADCK1Q86TW2 530 aa8.3□□□□□ -1.08
VRK3-216ENST00000599342 GLB1L2Q8IW92 636 aa8.3□□□□□ -1.08
VRK3-216ENST00000599342 KLHL36Q8N4N3 616 aa8.3□□□□□ -1.08
VRK3-216ENST00000599342 OR2Z1Q8NG97 314 aa8.3□□□□□ -1.08
VRK3-216ENST00000599342 NANPQ8TBE9 248 aa8.3□□□□□ -1.08
VRK3-216ENST00000599342 SLC7A13Q8TCU3 470 aa8.3□□□□□ -1.08
VRK3-216ENST00000599342 CMTM5Q96DZ9 223 aa8.3□□□□□ -1.08
VRK3-216ENST00000599342 RSRC1Q96IZ7 334 aaKnown RBP8.3□□□□□ -1.08
VRK3-216ENST00000599342 SUCNR1Q9BXA5 334 aa8.3□□□□□ -1.08
VRK3-216ENST00000599342 TMPRSS13Q9BYE2 586 aa8.3□□□□□ -1.08
VRK3-216ENST00000599342 SYT4Q9H2B2 425 aa8.3□□□□□ -1.08
VRK3-216ENST00000599342 SPAG4Q9NPE6 437 aa8.3□□□□□ -1.08
VRK3-216ENST00000599342 MED4Q9NPJ6 270 aa8.3□□□□□ -1.08
VRK3-216ENST00000599342 TMEM106BQ9NUM4 274 aa8.3□□□□□ -1.08
VRK3-216ENST00000599342 ZNF446Q9NWS9 450 aa8.3□□□□□ -1.08
VRK3-216ENST00000599342 ASH2LQ9UBL3 628 aa8.3□□□□□ -1.08
VRK3-216ENST00000599342 EGFL7Q9UHF1 273 aa8.3□□□□□ -1.08
VRK3-216ENST00000599342 KLHL21Q9UJP4 597 aa8.3□□□□□ -1.08
VRK3-216ENST00000599342 SAMD4AQ9UPU9 718 aaKnown RBP8.3□□□□□ -1.08
Retrieved 100 of 20,778 RNA–protein pairs in 27.2 ms