RNA–Protein interactions for RNA: ENST00000598558.5

SHKBP1-217, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 3

Gene SHKBP1, Length 579 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-217ENST00000598558 C5orf49A4QMS7 147 aa12.24□□□□□ -0.45
SHKBP1-217ENST00000598558 RIIAD1A6NNX1 92 aa12.24□□□□□ -0.45
SHKBP1-217ENST00000598558 ZAR1LA6NP61 321 aa12.24□□□□□ -0.45
SHKBP1-217ENST00000598558 NGFP01138 241 aa12.24□□□□□ -0.45
SHKBP1-217ENST00000598558 OR4A8P0C604 315 aa12.24□□□□□ -0.45
SHKBP1-217ENST00000598558 FAM157BP0CG42 384 aa12.24□□□□□ -0.45
SHKBP1-217ENST00000598558 PCBD1P61457 104 aa12.24□□□□□ -0.45
SHKBP1-217ENST00000598558 ESRRGP62508 458 aa12.24□□□□□ -0.45
SHKBP1-217ENST00000598558 PLP2Q04941 152 aa12.24□□□□□ -0.45
SHKBP1-217ENST00000598558 TMEM255AQ5JRV8 349 aa12.24□□□□□ -0.45
SHKBP1-217ENST00000598558 SLX4IPQ5VYV7 408 aa12.24□□□□□ -0.45
SHKBP1-217ENST00000598558 SLC18B1Q6NT16 456 aa12.24□□□□□ -0.45
SHKBP1-217ENST00000598558 PLBD1Q6P4A8 553 aa12.24□□□□□ -0.45
SHKBP1-217ENST00000598558 CFAP77Q6ZQR2 320 aa12.24□□□□□ -0.45
SHKBP1-217ENST00000598558 BCDIN3DQ7Z5W3 292 aaKnown RBP12.24□□□□□ -0.45
SHKBP1-217ENST00000598558 CPOQ8IVL8 374 aa12.24□□□□□ -0.45
SHKBP1-217ENST00000598558 ZNF101Q8IZC7 436 aa12.24□□□□□ -0.45
SHKBP1-217ENST00000598558 FBXL14Q8N1E6 418 aa12.24□□□□□ -0.45
SHKBP1-217ENST00000598558 PQLC1Q8N2U9 271 aa12.24□□□□□ -0.45
SHKBP1-217ENST00000598558 PROKR2Q8NFJ6 384 aa12.24□□□□□ -0.45
SHKBP1-217ENST00000598558 OR10S1Q8NGN2 331 aa12.24□□□□□ -0.45
SHKBP1-217ENST00000598558 OR2T4Q8NH00 348 aa12.24□□□□□ -0.45
SHKBP1-217ENST00000598558 PNRC2Q9NPJ4 139 aaKnown RBP12.24□□□□□ -0.45
SHKBP1-217ENST00000598558 CBLN4Q9NTU7 201 aa12.24□□□□□ -0.45
SHKBP1-217ENST00000598558 BEX4Q9NWD9 120 aaPredicted RBP12.24□□□□□ -0.45
SHKBP1-217ENST00000598558 CYB5R1Q9UHQ9 305 aa12.24□□□□□ -0.45
SHKBP1-217ENST00000598558 FBXL3Q9UKT7 428 aa12.24□□□□□ -0.45
SHKBP1-217ENST00000598558 FZR1Q9UM11 496 aa12.24□□□□□ -0.45
SHKBP1-217ENST00000598558 OR6C6A6NF89 314 aa12.23□□□□□ -0.45
SHKBP1-217ENST00000598558 ERICH4A6NGS2 130 aa12.23□□□□□ -0.45
SHKBP1-217ENST00000598558 E9PQ18 207 aa12.23□□□□□ -0.45
SHKBP1-217ENST00000598558 EI24O14681 340 aa12.23□□□□□ -0.45
SHKBP1-217ENST00000598558 SGCEO43556 437 aa12.23□□□□□ -0.45
SHKBP1-217ENST00000598558 SYNGR3O43761 229 aa12.23□□□□□ -0.45
SHKBP1-217ENST00000598558 PRKYO43930 277 aa12.23□□□□□ -0.45
SHKBP1-217ENST00000598558 SNAP29O95721 258 aa12.23□□□□□ -0.45
SHKBP1-217ENST00000598558 IFNGP01579 166 aa12.23□□□□□ -0.45
SHKBP1-217ENST00000598558 HMGN1P05114 100 aa12.23□□□□□ -0.45
SHKBP1-217ENST00000598558 ALPLP05186 524 aa12.23□□□□□ -0.45
SHKBP1-217ENST00000598558 DBHP09172 617 aa12.23□□□□□ -0.45
SHKBP1-217ENST00000598558 PAX1P15863 534 aa12.23□□□□□ -0.45
SHKBP1-217ENST00000598558 ZNF3P17036 446 aa12.23□□□□□ -0.45
SHKBP1-217ENST00000598558 CCNOP22674 350 aa12.23□□□□□ -0.45
SHKBP1-217ENST00000598558 IGFBP5P24593 272 aa12.23□□□□□ -0.45
SHKBP1-217ENST00000598558 APLNRP35414 380 aa12.23□□□□□ -0.45
SHKBP1-217ENST00000598558 GLRXP35754 106 aa12.23□□□□□ -0.45
SHKBP1-217ENST00000598558 SERPINF1P36955 418 aa12.23□□□□□ -0.45
SHKBP1-217ENST00000598558 PTH2RP49190 550 aa12.23□□□□□ -0.45
SHKBP1-217ENST00000598558 GLO1Q04760 184 aa12.23□□□□□ -0.45
SHKBP1-217ENST00000598558 AQP6Q13520 282 aa12.23□□□□□ -0.45
SHKBP1-217ENST00000598558 AGAP6Q5VW22 663 aa12.23□□□□□ -0.45
SHKBP1-217ENST00000598558 C12orf73Q69YU5 71 aa12.23□□□□□ -0.45
SHKBP1-217ENST00000598558 CBR4Q8N4T8 237 aa12.23□□□□□ -0.45
SHKBP1-217ENST00000598558 OTULINQ96BN8 352 aa12.23□□□□□ -0.45
SHKBP1-217ENST00000598558 PERPQ96FX8 193 aa12.23□□□□□ -0.45
SHKBP1-217ENST00000598558 MAP6Q96JE9 813 aa12.23□□□□□ -0.45
SHKBP1-217ENST00000598558 DOK1Q99704 481 aa12.23□□□□□ -0.45
SHKBP1-217ENST00000598558 WACQ9BTA9 647 aa12.23□□□□□ -0.45
SHKBP1-217ENST00000598558 MRPL37Q9BZE1 423 aaKnown RBP12.23□□□□□ -0.45
SHKBP1-217ENST00000598558 GRIP2Q9C0E4 1043 aa12.23□□□□□ -0.45
SHKBP1-217ENST00000598558 OR51V1Q9H2C8 321 aa12.23□□□□□ -0.45
SHKBP1-217ENST00000598558 POFUT1Q9H488 388 aa12.23□□□□□ -0.45
SHKBP1-217ENST00000598558 ZNF442Q9H7R0 627 aa12.23□□□□□ -0.45
SHKBP1-217ENST00000598558 CDH20Q9HBT6 801 aa12.23□□□□□ -0.45
SHKBP1-217ENST00000598558 MYEF2Q9P2K5 600 aaKnown RBP12.23□□□□□ -0.45
SHKBP1-217ENST00000598558 GDF2Q9UK05 429 aaPredicted RBP12.23□□□□□ -0.45
SHKBP1-217ENST00000598558 COMMD3-BMI1R4GMX3 469 aa12.23□□□□□ -0.45
SHKBP1-217ENST00000598558 DOK2O60496 412 aa12.22□□□□□ -0.45
SHKBP1-217ENST00000598558 SMPD2O60906 423 aa12.22□□□□□ -0.45
SHKBP1-217ENST00000598558 BAG2O95816 211 aa12.22□□□□□ -0.45
SHKBP1-217ENST00000598558 CLPTM1O96005 669 aa12.22□□□□□ -0.45
SHKBP1-217ENST00000598558 PTHP01270 115 aa12.22□□□□□ -0.45
SHKBP1-217ENST00000598558 HLA-DQA2P01906 255 aa12.22□□□□□ -0.45
SHKBP1-217ENST00000598558 SLC2A5P22732 501 aa12.22□□□□□ -0.45
SHKBP1-217ENST00000598558 ANOS1P23352 680 aa12.22□□□□□ -0.45
SHKBP1-217ENST00000598558 GDI2P50395 445 aaKnown RBP12.22□□□□□ -0.45
SHKBP1-217ENST00000598558 UCP2P55851 309 aa12.22□□□□□ -0.45
SHKBP1-217ENST00000598558 SCRN3Q0VDG4 424 aa12.22□□□□□ -0.45
SHKBP1-217ENST00000598558 SNAPC1Q16533 368 aa12.22□□□□□ -0.45
SHKBP1-217ENST00000598558 PCK2Q16822 640 aa12.22□□□□□ -0.45
SHKBP1-217ENST00000598558 TBC1D28Q2M2D7 210 aa12.22□□□□□ -0.45
SHKBP1-217ENST00000598558 ZIK1Q3SY52 487 aaPredicted RBP12.22□□□□□ -0.45
SHKBP1-217ENST00000598558 TMEM154Q6P9G4 183 aa12.22□□□□□ -0.45
SHKBP1-217ENST00000598558 C10orf67Q8IYJ2 551 aa12.22□□□□□ -0.45
SHKBP1-217ENST00000598558 ZCCHC24Q8N2G6 241 aaKnown RBP12.22□□□□□ -0.45
SHKBP1-217ENST00000598558 OR1F12Q8NHA8 337 aa12.22□□□□□ -0.45
SHKBP1-217ENST00000598558 UBE2FQ969M7 185 aa12.22□□□□□ -0.45
SHKBP1-217ENST00000598558 ZMYND19Q96E35 227 aaPredicted RBP12.22□□□□□ -0.45
SHKBP1-217ENST00000598558 RBM4BQ9BQ04 359 aaKnown RBP12.22□□□□□ -0.45
SHKBP1-217ENST00000598558 CACNG6Q9BXT2 260 aa12.22□□□□□ -0.45
SHKBP1-217ENST00000598558 GABARAPL3Q9BY60 117 aa12.22□□□□□ -0.45
SHKBP1-217ENST00000598558 GSX2Q9BZM3 304 aa12.22□□□□□ -0.45
SHKBP1-217ENST00000598558 C1orf198Q9H425 327 aa12.22□□□□□ -0.45
SHKBP1-217ENST00000598558 RIBC2Q9H4K1 309 aa12.22□□□□□ -0.45
SHKBP1-217ENST00000598558 PLEK2Q9NYT0 353 aa12.22□□□□□ -0.45
SHKBP1-217ENST00000598558 USE1Q9NZ43 259 aa12.22□□□□□ -0.45
SHKBP1-217ENST00000598558 EDARQ9UNE0 448 aa12.22□□□□□ -0.45
SHKBP1-217ENST00000598558 CCDC168Q8NDH2 2452 aa12.22□□□□□ -0.45
SHKBP1-217ENST00000598558 PRRC2AP48634 2157 aaKnown RBP12.21□□□□□ -0.45
SHKBP1-217ENST00000598558 CCDC182A6NF36 153 aa12.21□□□□□ -0.45
Retrieved 100 of 20,778 RNA–protein pairs in 27.6 ms