RNA–Protein interactions for RNA: ENST00000598471.1

UPF1-206, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 3

Gene UPF1, Length 582 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-206ENST00000598471 ZNF679Q8IYX0 411 aa13.57□□□□□ -0.24
UPF1-206ENST00000598471 YIPF7Q8N8F6 280 aa13.57□□□□□ -0.24
UPF1-206ENST00000598471 NAXEQ8NCW5 288 aa13.57□□□□□ -0.24
UPF1-206ENST00000598471 OR1K1Q8NGR3 316 aa13.57□□□□□ -0.24
UPF1-206ENST00000598471 ST7LQ8TDW4 575 aa13.57□□□□□ -0.24
UPF1-206ENST00000598471 GATAD2BQ8WXI9 593 aa13.57□□□□□ -0.24
UPF1-206ENST00000598471 NANOS1Q8WY41 292 aaKnown RBP13.57□□□□□ -0.24
UPF1-206ENST00000598471 RND1Q92730 232 aa13.57□□□□□ -0.24
UPF1-206ENST00000598471 HTRA1Q92743 480 aa13.57□□□□□ -0.24
UPF1-206ENST00000598471 SLAMF6Q96DU3 332 aa13.57□□□□□ -0.24
UPF1-206ENST00000598471 BABAM2Q9NXR7 383 aa13.57□□□□□ -0.24
UPF1-206ENST00000598471 GALNT8Q9NY28 637 aa13.57□□□□□ -0.24
UPF1-206ENST00000598471 NDUFA13Q9P0J0 144 aa13.57□□□□□ -0.24
UPF1-206ENST00000598471 ZNF629Q9UEG4 869 aaPredicted RBP13.57□□□□□ -0.24
UPF1-206ENST00000598471 OSGIN2Q9Y236 505 aa13.57□□□□□ -0.24
UPF1-206ENST00000598471 MEMO1Q9Y316 297 aa13.57□□□□□ -0.24
UPF1-206ENST00000598471 MED12LQ86YW9 2145 aa13.57□□□□□ -0.24
UPF1-206ENST00000598471 DOCK7Q96N67 2140 aa13.57□□□□□ -0.24
UPF1-206ENST00000598471 CHD6Q8TD26 2715 aa13.56□□□□□ -0.24
UPF1-206ENST00000598471 CIB4A0PJX0 185 aa13.56□□□□□ -0.24
UPF1-206ENST00000598471 ZNF878C9JN71 531 aa13.56□□□□□ -0.24
UPF1-206ENST00000598471 DVL2O14641 736 aa13.56□□□□□ -0.24
UPF1-206ENST00000598471 CGAP01215 116 aa13.56□□□□□ -0.24
UPF1-206ENST00000598471 ITGA5P08648 1049 aa13.56□□□□□ -0.24
UPF1-206ENST00000598471 H2BFMP0C1H6 154 aa13.56□□□□□ -0.24
UPF1-206ENST00000598471 PSKH1P11801 424 aa13.56□□□□□ -0.24
UPF1-206ENST00000598471 CD79BP40259 229 aa13.56□□□□□ -0.24
UPF1-206ENST00000598471 RIDAP52758 137 aaKnown RBP13.56□□□□□ -0.24
UPF1-206ENST00000598471 GP2P55259 537 aaKnown RBP13.56□□□□□ -0.24
UPF1-206ENST00000598471 OR12D2P58182 307 aa13.56□□□□□ -0.24
UPF1-206ENST00000598471 ACSM1Q08AH1 577 aa13.56□□□□□ -0.24
UPF1-206ENST00000598471 P2RY6Q15077 328 aa13.56□□□□□ -0.24
UPF1-206ENST00000598471 TAF13Q15543 124 aa13.56□□□□□ -0.24
UPF1-206ENST00000598471 ZNF544Q6NX49 715 aa13.56□□□□□ -0.24
UPF1-206ENST00000598471 CORO6Q6QEF8 472 aa13.56□□□□□ -0.24
UPF1-206ENST00000598471 RHOUQ7L0Q8 258 aa13.56□□□□□ -0.24
UPF1-206ENST00000598471 VASH1Q7L8A9 365 aaPredicted RBP13.56□□□□□ -0.24
UPF1-206ENST00000598471 KLBQ86Z14 1044 aa13.56□□□□□ -0.24
UPF1-206ENST00000598471 HIST2H2ABQ8IUE6 130 aaPredicted RBP13.56□□□□□ -0.24
UPF1-206ENST00000598471 ZNF610Q8N9Z0 462 aa13.56□□□□□ -0.24
UPF1-206ENST00000598471 ZNF485Q8NCK3 441 aa13.56□□□□□ -0.24
UPF1-206ENST00000598471 C1orf162Q8NEQ5 155 aaPredicted RBP13.56□□□□□ -0.24
UPF1-206ENST00000598471 RNF133Q8WVZ7 376 aa13.56□□□□□ -0.24
UPF1-206ENST00000598471 UFD1Q92890 307 aa13.56□□□□□ -0.24
UPF1-206ENST00000598471 DMRTA2Q96SC8 542 aa13.56□□□□□ -0.24
UPF1-206ENST00000598471 SH3GL3Q99963 347 aa13.56□□□□□ -0.24
UPF1-206ENST00000598471 OPN3Q9H1Y3 402 aaPredicted RBP13.56□□□□□ -0.24
UPF1-206ENST00000598471 ISG20L2Q9H9L3 353 aaKnown RBP13.56□□□□□ -0.24
UPF1-206ENST00000598471 CENPMQ9NSP4 180 aa13.56□□□□□ -0.24
UPF1-206ENST00000598471 PRRC2CQ9Y520 2896 aaKnown RBP13.56□□□□□ -0.24
UPF1-206ENST00000598471 ARHGAP21Q5T5U3 1957 aa13.56□□□□□ -0.24
UPF1-206ENST00000598471 A0A0G2JNJ9 132 aa13.55□□□□□ -0.24
UPF1-206ENST00000598471 MSTNO14793 375 aa13.55□□□□□ -0.24
UPF1-206ENST00000598471 COX5AP20674 150 aa13.55□□□□□ -0.24
UPF1-206ENST00000598471 HOXC12P31275 282 aa13.55□□□□□ -0.24
UPF1-206ENST00000598471 ZNF684Q5T5D7 378 aa13.55□□□□□ -0.24
UPF1-206ENST00000598471 OR7E24Q6IFN5 339 aa13.55□□□□□ -0.24
UPF1-206ENST00000598471 TMEM53Q6P2H8 277 aa13.55□□□□□ -0.24
UPF1-206ENST00000598471 LRRN1Q6UXK5 716 aa13.55□□□□□ -0.24
UPF1-206ENST00000598471 SPATC1Q76KD6 591 aa13.55□□□□□ -0.24
UPF1-206ENST00000598471 SATL1Q86VE3 508 aa13.55□□□□□ -0.24
UPF1-206ENST00000598471 CCDC36Q8IYA8 594 aa13.55□□□□□ -0.24
UPF1-206ENST00000598471 OR13F1Q8NGS4 319 aa13.55□□□□□ -0.24
UPF1-206ENST00000598471 MAP6Q96JE9 813 aa13.55□□□□□ -0.24
UPF1-206ENST00000598471 OPALINQ96PE5 141 aa13.55□□□□□ -0.24
UPF1-206ENST00000598471 AMELYQ99218 206 aa13.55□□□□□ -0.24
UPF1-206ENST00000598471 NIPAL2Q9H841 368 aa13.55□□□□□ -0.24
UPF1-206ENST00000598471 RNF121Q9H920 327 aa13.55□□□□□ -0.24
UPF1-206ENST00000598471 ELOVL3Q9HB03 270 aa13.55□□□□□ -0.24
UPF1-206ENST00000598471 SLCO1C1Q9NYB5 712 aa13.55□□□□□ -0.24
UPF1-206ENST00000598471 Q9UFV3 132 aa13.55□□□□□ -0.24
UPF1-206ENST00000598471 MRM2Q9UI43 246 aaKnown RBP13.55□□□□□ -0.24
UPF1-206ENST00000598471 TIMM10BQ9Y5J6 103 aa13.55□□□□□ -0.24
UPF1-206ENST00000598471 SMG1Q96Q15 3661 aaKnown RBP13.55□□□□□ -0.24
UPF1-206ENST00000598471 A0A096LPE4 126 aa13.54□□□□□ -0.24
UPF1-206ENST00000598471 SMIM31A0A1B0GVY4 71 aa13.54□□□□□ -0.24
UPF1-206ENST00000598471 A0A1W2PPZ6 126 aa13.54□□□□□ -0.24
UPF1-206ENST00000598471 EEF1E1-BLOC1S5C9J1V9 151 aa13.54□□□□□ -0.24
UPF1-206ENST00000598471 PSMD9O00233 223 aa13.54□□□□□ -0.24
UPF1-206ENST00000598471 CCRL2O00421 344 aa13.54□□□□□ -0.24
UPF1-206ENST00000598471 CCL21O00585 134 aa13.54□□□□□ -0.24
UPF1-206ENST00000598471 EEF1E1O43324 174 aaKnown RBP13.54□□□□□ -0.24
UPF1-206ENST00000598471 NOL3O60936 208 aaKnown RBP13.54□□□□□ -0.24
UPF1-206ENST00000598471 UBL3O95164 117 aa13.54□□□□□ -0.24
UPF1-206ENST00000598471 HOXB1P14653 301 aaPredicted RBP13.54□□□□□ -0.24
UPF1-206ENST00000598471 BMP5P22003 454 aa13.54□□□□□ -0.24
UPF1-206ENST00000598471 IGHV1-2P23083 117 aa13.54□□□□□ -0.24
UPF1-206ENST00000598471 HSD11B1P28845 292 aa13.54□□□□□ -0.24
UPF1-206ENST00000598471 ARR3P36575 388 aa13.54□□□□□ -0.24
UPF1-206ENST00000598471 FOXG1P55316 489 aaPredicted RBP13.54□□□□□ -0.24
UPF1-206ENST00000598471 GRB2P62993 217 aaKnown RBP13.54□□□□□ -0.24
UPF1-206ENST00000598471 HIST1H3AP68431 136 aa13.54□□□□□ -0.24
UPF1-206ENST00000598471 ECH1Q13011 328 aa13.54□□□□□ -0.24
UPF1-206ENST00000598471 RAB35Q15286 201 aa13.54□□□□□ -0.24
UPF1-206ENST00000598471 TSTQ16762 297 aaKnown RBP13.54□□□□□ -0.24
UPF1-206ENST00000598471 ZNF829Q3KNS6 432 aaPredicted RBP13.54□□□□□ -0.24
UPF1-206ENST00000598471 CCDC58Q4VC31 144 aa13.54□□□□□ -0.24
UPF1-206ENST00000598471 ELFN2Q5R3F8 820 aa13.54□□□□□ -0.24
UPF1-206ENST00000598471 HIST2H3PS2Q5TEC6 136 aa13.54□□□□□ -0.24
UPF1-206ENST00000598471 CFAP77Q6ZQR2 320 aa13.54□□□□□ -0.24
Retrieved 100 of 20,778 RNA–protein pairs in 28.8 ms