RNA–Protein interactions for RNA: ENST00000597172.5

TRIM28-208, Transcript of tripartite motif containing 28, humanhuman

TSL 2

Gene TRIM28, Length 577 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-208ENST00000597172 DNM1P34Q6PK57 102 aa8.26□□□□□ -1.09
TRIM28-208ENST00000597172 ZNF474Q6S9Z5 364 aaPredicted RBP8.26□□□□□ -1.09
TRIM28-208ENST00000597172 SHFQ7M4L6 423 aa8.26□□□□□ -1.09
TRIM28-208ENST00000597172 UBE2J2Q8N2K1 259 aa8.26□□□□□ -1.09
TRIM28-208ENST00000597172 ZNF540Q8NDQ6 660 aa8.26□□□□□ -1.09
TRIM28-208ENST00000597172 SLC26A10Q8NG04 563 aa8.26□□□□□ -1.09
TRIM28-208ENST00000597172 OR51G2Q8NGK0 314 aa8.26□□□□□ -1.09
TRIM28-208ENST00000597172 OR52I1Q8NGK6 324 aa8.26□□□□□ -1.09
TRIM28-208ENST00000597172 IPCEF1Q8WWN9 437 aaPredicted RBP8.26□□□□□ -1.09
TRIM28-208ENST00000597172 C11orf40Q8WZ69 217 aa8.26□□□□□ -1.09
TRIM28-208ENST00000597172 RND1Q92730 232 aa8.26□□□□□ -1.09
TRIM28-208ENST00000597172 NABP1Q96AH0 204 aa8.26□□□□□ -1.09
TRIM28-208ENST00000597172 Q96MF0 132 aa8.26□□□□□ -1.09
TRIM28-208ENST00000597172 SIGLEC11Q96RL6 698 aa8.26□□□□□ -1.09
TRIM28-208ENST00000597172 ZNF649Q9BS31 505 aa8.26□□□□□ -1.09
TRIM28-208ENST00000597172 SFXN3Q9BWM7 321 aa8.26□□□□□ -1.09
TRIM28-208ENST00000597172 OPN3Q9H1Y3 402 aaPredicted RBP8.26□□□□□ -1.09
TRIM28-208ENST00000597172 SEC61A2Q9H9S3 476 aa8.26□□□□□ -1.09
TRIM28-208ENST00000597172 FGF20Q9NP95 211 aaPredicted RBP8.26□□□□□ -1.09
TRIM28-208ENST00000597172 B3GAT2Q9NPZ5 323 aa8.26□□□□□ -1.09
TRIM28-208ENST00000597172 SCN3BQ9NY72 215 aa8.26□□□□□ -1.09
TRIM28-208ENST00000597172 CNOT2Q9NZN8 540 aaKnown RBP8.26□□□□□ -1.09
TRIM28-208ENST00000597172 ERVK-18Q9QC07 812 aa8.26□□□□□ -1.09
TRIM28-208ENST00000597172 UPB1Q9UBR1 384 aa8.26□□□□□ -1.09
TRIM28-208ENST00000597172 MALT1Q9UDY8 824 aa8.26□□□□□ -1.09
TRIM28-208ENST00000597172 ZNF629Q9UEG4 869 aaPredicted RBP8.26□□□□□ -1.09
TRIM28-208ENST00000597172 PROCRQ9UNN8 238 aa8.26□□□□□ -1.09
TRIM28-208ENST00000597172 TPRKBQ9Y3C4 175 aa8.26□□□□□ -1.09
TRIM28-208ENST00000597172 A0A1W2PPL8 197 aa8.25□□□□□ -1.09
TRIM28-208ENST00000597172 EFCAB10A6NFE3 127 aa8.25□□□□□ -1.09
TRIM28-208ENST00000597172 A8MXE2 369 aa8.25□□□□□ -1.09
TRIM28-208ENST00000597172 ZNF99A8MXY4 864 aaPredicted RBP8.25□□□□□ -1.09
TRIM28-208ENST00000597172 ZNF587BE7ETH6 402 aa8.25□□□□□ -1.09
TRIM28-208ENST00000597172 KRT33AO76009 404 aa8.25□□□□□ -1.09
TRIM28-208ENST00000597172 CNOT4O95628 575 aaKnown RBP8.25□□□□□ -1.09
TRIM28-208ENST00000597172 HRGP04196 525 aa8.25□□□□□ -1.09
TRIM28-208ENST00000597172 CDK1P06493 297 aa8.25□□□□□ -1.09
TRIM28-208ENST00000597172 ITGA5P08648 1049 aa8.25□□□□□ -1.09
TRIM28-208ENST00000597172 RPSAP08865 295 aaKnown RBP8.25□□□□□ -1.09
TRIM28-208ENST00000597172 PIPP12273 146 aaPredicted RBP8.25□□□□□ -1.09
TRIM28-208ENST00000597172 NR2C1P13056 603 aa8.25□□□□□ -1.09
TRIM28-208ENST00000597172 IGHV1-2P23083 117 aa8.25□□□□□ -1.09
TRIM28-208ENST00000597172 MPGP29372 298 aa8.25□□□□□ -1.09
TRIM28-208ENST00000597172 OPRM1P35372 400 aa8.25□□□□□ -1.09
TRIM28-208ENST00000597172 NAA10P41227 235 aaPredicted RBP8.25□□□□□ -1.09
TRIM28-208ENST00000597172 RPS27P42677 84 aaKnown RBP8.25□□□□□ -1.09
TRIM28-208ENST00000597172 KIR2DL3P43628 341 aa8.25□□□□□ -1.09
TRIM28-208ENST00000597172 BLVRAP53004 296 aa8.25□□□□□ -1.09
TRIM28-208ENST00000597172 MRPS34P82930 218 aaKnown RBP8.25□□□□□ -1.09
TRIM28-208ENST00000597172 GLO1Q04760 184 aa8.25□□□□□ -1.09
TRIM28-208ENST00000597172 RAB40BQ12829 278 aa8.25□□□□□ -1.09
TRIM28-208ENST00000597172 ENDOGQ14249 297 aaKnown RBP8.25□□□□□ -1.09
TRIM28-208ENST00000597172 SGCAQ16586 387 aa8.25□□□□□ -1.09
TRIM28-208ENST00000597172 PCK2Q16822 640 aa8.25□□□□□ -1.09
TRIM28-208ENST00000597172 KRTAP24-1Q3LI83 254 aa8.25□□□□□ -1.09
TRIM28-208ENST00000597172 KCTD21Q4G0X4 260 aa8.25□□□□□ -1.09
TRIM28-208ENST00000597172 TEX30Q5JUR7 227 aa8.25□□□□□ -1.09
TRIM28-208ENST00000597172 LCN1P1Q5VSP4 162 aa8.25□□□□□ -1.09
TRIM28-208ENST00000597172 C9orf135Q5VTT2 229 aa8.25□□□□□ -1.09
TRIM28-208ENST00000597172 Q6ZT83 130 aa8.25□□□□□ -1.09
TRIM28-208ENST00000597172 AHSA2Q719I0 299 aa8.25□□□□□ -1.09
TRIM28-208ENST00000597172 ZNF627Q7L945 461 aa8.25□□□□□ -1.09
TRIM28-208ENST00000597172 SLC16A9Q7RTY1 509 aa8.25□□□□□ -1.09
TRIM28-208ENST00000597172 GABRG1Q8N1C3 465 aa8.25□□□□□ -1.09
TRIM28-208ENST00000597172 TMEM80Q96HE8 168 aa8.25□□□□□ -1.09
TRIM28-208ENST00000597172 DOCK7Q96N67 2140 aa8.25□□□□□ -1.09
TRIM28-208ENST00000597172 COPS4Q9BT78 406 aa8.25□□□□□ -1.09
TRIM28-208ENST00000597172 NELFAQ9H3P2 528 aa8.25□□□□□ -1.09
TRIM28-208ENST00000597172 ZNF696Q9H7X3 374 aa8.25□□□□□ -1.09
TRIM28-208ENST00000597172 EMC7Q9NPA0 242 aa8.25□□□□□ -1.09
TRIM28-208ENST00000597172 POLE4Q9NR33 117 aa8.25□□□□□ -1.09
TRIM28-208ENST00000597172 TMEM38BQ9NVV0 291 aa8.25□□□□□ -1.09
TRIM28-208ENST00000597172 JKAMPQ9P055 326 aa8.25□□□□□ -1.09
TRIM28-208ENST00000597172 COPS3Q9UNS2 423 aa8.25□□□□□ -1.09
TRIM28-208ENST00000597172 ZNF281Q9Y2X9 895 aa8.25□□□□□ -1.09
TRIM28-208ENST00000597172 COMMD3-BMI1R4GMX3 469 aa8.25□□□□□ -1.09
TRIM28-208ENST00000597172 ARHGAP21Q5T5U3 1957 aa8.24□□□□□ -1.09
TRIM28-208ENST00000597172 TRIM64BA6NI03 449 aa8.24□□□□□ -1.09
TRIM28-208ENST00000597172 A6NNC1 897 aa8.24□□□□□ -1.09
TRIM28-208ENST00000597172 MSTNO14793 375 aa8.24□□□□□ -1.09
TRIM28-208ENST00000597172 SEC14L2O76054 403 aa8.24□□□□□ -1.09
TRIM28-208ENST00000597172 TNFAIP8O95379 198 aa8.24□□□□□ -1.09
TRIM28-208ENST00000597172 IGHA1P01876 353 aa8.24□□□□□ -1.09
TRIM28-208ENST00000597172 HLA-DQA2P01906 255 aa8.24□□□□□ -1.09
TRIM28-208ENST00000597172 MT-ND2P03891 347 aa8.24□□□□□ -1.09
TRIM28-208ENST00000597172 BMP5P22003 454 aa8.24□□□□□ -1.09
TRIM28-208ENST00000597172 DCKP27707 260 aa8.24□□□□□ -1.09
TRIM28-208ENST00000597172 ENTPD1P49961 510 aa8.24□□□□□ -1.09
TRIM28-208ENST00000597172 ETV1P50549 477 aa8.24□□□□□ -1.09
TRIM28-208ENST00000597172 ZNF84P51523 738 aa8.24□□□□□ -1.09
TRIM28-208ENST00000597172 GABARAPL2P60520 117 aa8.24□□□□□ -1.09
TRIM28-208ENST00000597172 LSM6P62312 80 aaKnown RBP8.24□□□□□ -1.09
TRIM28-208ENST00000597172 POU4F2Q12837 409 aa8.24□□□□□ -1.09
TRIM28-208ENST00000597172 IRF3Q14653 427 aa8.24□□□□□ -1.09
TRIM28-208ENST00000597172 FAM27BQ5VT28 67 aa8.24□□□□□ -1.09
TRIM28-208ENST00000597172 DPY19L4Q7Z388 723 aa8.24□□□□□ -1.09
TRIM28-208ENST00000597172 ZSCAN2Q7Z7L9 614 aaPredicted RBP8.24□□□□□ -1.09
TRIM28-208ENST00000597172 ERI1Q8IV48 349 aaKnown RBP8.24□□□□□ -1.09
TRIM28-208ENST00000597172 SKA3Q8IX90 412 aa8.24□□□□□ -1.09
TRIM28-208ENST00000597172 SLC35F2Q8IXU6 374 aa8.24□□□□□ -1.09
Retrieved 100 of 20,778 RNA–protein pairs in 52.3 ms