RNA–Protein interactions for RNA: ENST00000597136.1

TRIM28-207, Transcript of tripartite motif containing 28, humanhuman

TSL 2

Gene TRIM28, Length 1,552 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-207ENST00000597136 RAB40BQ12829 278 aa13.08□□□□□ -0.32
TRIM28-207ENST00000597136 PPA1Q15181 289 aa13.08□□□□□ -0.32
TRIM28-207ENST00000597136 MEP1BQ16820 701 aa13.08□□□□□ -0.32
TRIM28-207ENST00000597136 TBRG1Q3YBR2 411 aa13.08□□□□□ -0.32
TRIM28-207ENST00000597136 TIGD4Q8IY51 512 aa13.08□□□□□ -0.32
TRIM28-207ENST00000597136 OR4F15Q8NGB8 312 aa13.08□□□□□ -0.32
TRIM28-207ENST00000597136 SGCDQ92629 289 aa13.08□□□□□ -0.32
TRIM28-207ENST00000597136 NABP1Q96AH0 204 aa13.08□□□□□ -0.32
TRIM28-207ENST00000597136 HS3ST6Q96QI5 342 aa13.08□□□□□ -0.32
TRIM28-207ENST00000597136 CNN2Q99439 309 aaKnown RBP13.08□□□□□ -0.32
TRIM28-207ENST00000597136 DUSP21Q9H596 190 aa13.08□□□□□ -0.32
TRIM28-207ENST00000597136 WDR76Q9H967 626 aa13.08□□□□□ -0.32
TRIM28-207ENST00000597136 ADGRL4Q9HBW9 690 aa13.08□□□□□ -0.32
TRIM28-207ENST00000597136 TMEM38BQ9NVV0 291 aa13.08□□□□□ -0.32
TRIM28-207ENST00000597136 EXOGQ9Y2C4 368 aaKnown RBP13.08□□□□□ -0.32
TRIM28-207ENST00000597136 COMMD3-BMI1R4GMX3 469 aa13.08□□□□□ -0.32
TRIM28-207ENST00000597136 USF3Q68DE3 2245 aa13.08□□□□□ -0.32
TRIM28-207ENST00000597136 J3QRE1 110 aa13.07□□□□□ -0.32
TRIM28-207ENST00000597136 SELENOFO60613 162 aa13.07□□□□□ -0.32
TRIM28-207ENST00000597136 TNFAIP8O95379 198 aa13.07□□□□□ -0.32
TRIM28-207ENST00000597136 PLAUP00749 431 aa13.07□□□□□ -0.32
TRIM28-207ENST00000597136 SBK2P0C263 348 aa13.07□□□□□ -0.32
TRIM28-207ENST00000597136 NAA10P41227 235 aaPredicted RBP13.07□□□□□ -0.32
TRIM28-207ENST00000597136 ST3GAL4Q11206 333 aa13.07□□□□□ -0.32
TRIM28-207ENST00000597136 KCNMB1Q16558 191 aa13.07□□□□□ -0.32
TRIM28-207ENST00000597136 SGCAQ16586 387 aa13.07□□□□□ -0.32
TRIM28-207ENST00000597136 KCTD21Q4G0X4 260 aa13.07□□□□□ -0.32
TRIM28-207ENST00000597136 OTPQ5XKR4 325 aa13.07□□□□□ -0.32
TRIM28-207ENST00000597136 ANKRD16Q6P6B7 361 aa13.07□□□□□ -0.32
TRIM28-207ENST00000597136 AHSA2Q719I0 299 aa13.07□□□□□ -0.32
TRIM28-207ENST00000597136 ZNF627Q7L945 461 aa13.07□□□□□ -0.32
TRIM28-207ENST00000597136 SHFQ7M4L6 423 aa13.07□□□□□ -0.32
TRIM28-207ENST00000597136 ZSCAN2Q7Z7L9 614 aaPredicted RBP13.07□□□□□ -0.32
TRIM28-207ENST00000597136 P2RY8Q86VZ1 359 aa13.07□□□□□ -0.32
TRIM28-207ENST00000597136 ERI1Q8IV48 349 aaKnown RBP13.07□□□□□ -0.32
TRIM28-207ENST00000597136 C1orf162Q8NEQ5 155 aaPredicted RBP13.07□□□□□ -0.32
TRIM28-207ENST00000597136 OR52I1Q8NGK6 324 aa13.07□□□□□ -0.32
TRIM28-207ENST00000597136 IPCEF1Q8WWN9 437 aaPredicted RBP13.07□□□□□ -0.32
TRIM28-207ENST00000597136 C11orf40Q8WZ69 217 aa13.07□□□□□ -0.32
TRIM28-207ENST00000597136 MUCL1Q96DR8 90 aa13.07□□□□□ -0.32
TRIM28-207ENST00000597136 PIK3IP1Q96FE7 263 aa13.07□□□□□ -0.32
TRIM28-207ENST00000597136 BOD1Q96IK1 185 aa13.07□□□□□ -0.32
TRIM28-207ENST00000597136 INTS14Q96SY0 518 aa13.07□□□□□ -0.32
TRIM28-207ENST00000597136 FOXB1Q99853 325 aa13.07□□□□□ -0.32
TRIM28-207ENST00000597136 COPS4Q9BT78 406 aa13.07□□□□□ -0.32
TRIM28-207ENST00000597136 POLE4Q9NR33 117 aa13.07□□□□□ -0.32
TRIM28-207ENST00000597136 MBD3L2BA0A1B0GVZ6 204 aaPredicted RBP13.07□□□□□ -0.32
TRIM28-207ENST00000597136 DPRXA6NFQ7 191 aa13.07□□□□□ -0.32
TRIM28-207ENST00000597136 TRIM64A6NGJ6 449 aa13.07□□□□□ -0.32
TRIM28-207ENST00000597136 ZNF593O00488 134 aaPredicted RBP13.07□□□□□ -0.32
TRIM28-207ENST00000597136 FADS2O95864 444 aaKnown RBP13.07□□□□□ -0.32
TRIM28-207ENST00000597136 B4GALT1P15291 398 aa13.07□□□□□ -0.32
TRIM28-207ENST00000597136 NPR2P20594 1047 aa13.07□□□□□ -0.32
TRIM28-207ENST00000597136 SSTR2P30874 369 aa13.07□□□□□ -0.32
TRIM28-207ENST00000597136 ZNF83P51522 516 aa13.07□□□□□ -0.32
TRIM28-207ENST00000597136 SH3BGRP55822 239 aaPredicted RBP13.07□□□□□ -0.32
TRIM28-207ENST00000597136 KLHL24Q6TFL4 600 aa13.07□□□□□ -0.32
TRIM28-207ENST00000597136 ZNF813Q6ZN06 617 aa13.07□□□□□ -0.32
TRIM28-207ENST00000597136 SLC16A9Q7RTY1 509 aa13.07□□□□□ -0.32
TRIM28-207ENST00000597136 FGFBP3Q8TAT2 258 aa13.07□□□□□ -0.32
TRIM28-207ENST00000597136 SMAP2Q8WU79 429 aaPredicted RBP13.07□□□□□ -0.32
TRIM28-207ENST00000597136 NRGNQ92686 78 aa13.07□□□□□ -0.32
TRIM28-207ENST00000597136 MYDGFQ969H8 173 aa13.07□□□□□ -0.32
TRIM28-207ENST00000597136 PLPPR2Q96GM1 343 aa13.07□□□□□ -0.32
TRIM28-207ENST00000597136 SIAEQ9HAT2 523 aa13.07□□□□□ -0.32
TRIM28-207ENST00000597136 FGF20Q9NP95 211 aaPredicted RBP13.07□□□□□ -0.32
TRIM28-207ENST00000597136 EMC7Q9NPA0 242 aa13.07□□□□□ -0.32
TRIM28-207ENST00000597136 ERVK-18Q9QC07 812 aa13.07□□□□□ -0.32
TRIM28-207ENST00000597136 IRGMA1A4Y4 181 aa13.06□□□□□ -0.32
TRIM28-207ENST00000597136 LYNP07948 512 aa13.06□□□□□ -0.32
TRIM28-207ENST00000597136 ADRA2AP08913 450 aa13.06□□□□□ -0.32
TRIM28-207ENST00000597136 PATE4P0C8F1 98 aa13.06□□□□□ -0.32
TRIM28-207ENST00000597136 PSKH1P11801 424 aa13.06□□□□□ -0.32
TRIM28-207ENST00000597136 ZNF823P16415 610 aa13.06□□□□□ -0.32
TRIM28-207ENST00000597136 MSR1P21757 451 aa13.06□□□□□ -0.32
TRIM28-207ENST00000597136 EEF1B2P24534 225 aaKnown RBP13.06□□□□□ -0.32
TRIM28-207ENST00000597136 ENTPD1P49961 510 aa13.06□□□□□ -0.32
TRIM28-207ENST00000597136 HCCSP53701 268 aa13.06□□□□□ -0.32
TRIM28-207ENST00000597136 GABARAPL2P60520 117 aa13.06□□□□□ -0.32
TRIM28-207ENST00000597136 ADAM8P78325 824 aa13.06□□□□□ -0.32
TRIM28-207ENST00000597136 MVKQ03426 396 aa13.06□□□□□ -0.32
TRIM28-207ENST00000597136 PIGFQ07326 219 aa13.06□□□□□ -0.32
TRIM28-207ENST00000597136 PCK2Q16822 640 aa13.06□□□□□ -0.32
TRIM28-207ENST00000597136 NRN1LQ496H8 165 aa13.06□□□□□ -0.32
TRIM28-207ENST00000597136 TEX30Q5JUR7 227 aa13.06□□□□□ -0.32
TRIM28-207ENST00000597136 FAM27BQ5VT28 67 aa13.06□□□□□ -0.32
TRIM28-207ENST00000597136 TMEM200AQ86VY9 491 aa13.06□□□□□ -0.32
TRIM28-207ENST00000597136 SKA3Q8IX90 412 aa13.06□□□□□ -0.32
TRIM28-207ENST00000597136 STX19Q8N4C7 294 aa13.06□□□□□ -0.32
TRIM28-207ENST00000597136 SLC22A24Q8N4F4 322 aa13.06□□□□□ -0.32
TRIM28-207ENST00000597136 TMEM80Q96HE8 168 aa13.06□□□□□ -0.32
TRIM28-207ENST00000597136 SH3GL3Q99963 347 aa13.06□□□□□ -0.32
TRIM28-207ENST00000597136 USB1Q9BQ65 265 aaKnown RBP13.06□□□□□ -0.32
TRIM28-207ENST00000597136 YIPF3Q9GZM5 350 aa13.06□□□□□ -0.32
TRIM28-207ENST00000597136 LIME1Q9H400 295 aa13.06□□□□□ -0.32
TRIM28-207ENST00000597136 ZNF696Q9H7X3 374 aa13.06□□□□□ -0.32
TRIM28-207ENST00000597136 ZNF224Q9NZL3 707 aa13.06□□□□□ -0.32
TRIM28-207ENST00000597136 PCDHGB1Q9Y5G3 927 aa13.06□□□□□ -0.32
TRIM28-207ENST00000597136 CREBBPQ92793 2442 aa13.05□□□□□ -0.32
TRIM28-207ENST00000597136 IGHA1P01876 353 aa13.05□□□□□ -0.32
Retrieved 100 of 20,778 RNA–protein pairs in 35.8 ms