RNA–Protein interactions for RNA: ENST00000596842.5

UPF1-204, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 2

Gene UPF1, Length 3,825 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-204ENST00000596842 AGPAT2O15120 278 aa13.77□□□□□ -0.21
UPF1-204ENST00000596842 FOXS1O43638 330 aa13.77□□□□□ -0.21
UPF1-204ENST00000596842 LMX1BO60663 402 aa13.77□□□□□ -0.21
UPF1-204ENST00000596842 AKR1C3P42330 323 aa13.77□□□□□ -0.21
UPF1-204ENST00000596842 GFERP55789 205 aa13.77□□□□□ -0.21
UPF1-204ENST00000596842 PTPRSQ13332 1948 aa13.77□□□□□ -0.21
UPF1-204ENST00000596842 C9orf50Q5SZB4 431 aa13.77□□□□□ -0.21
UPF1-204ENST00000596842 ZNF660Q6AZW8 331 aaPredicted RBP13.77□□□□□ -0.21
UPF1-204ENST00000596842 FOXRED2Q8IWF2 684 aa13.77□□□□□ -0.21
UPF1-204ENST00000596842 SLC22A18ASQ8N1D0 253 aa13.77□□□□□ -0.21
UPF1-204ENST00000596842 C4orf45Q96LM5 186 aa13.77□□□□□ -0.21
UPF1-204ENST00000596842 KANTRA0A1W2PQU2 76 aa13.77□□□□□ -0.21
UPF1-204ENST00000596842 F5H0A9 414 aaPredicted RBP13.77□□□□□ -0.21
UPF1-204ENST00000596842 NR2C1P13056 603 aa13.77□□□□□ -0.21
UPF1-204ENST00000596842 GPR3P46089 330 aa13.77□□□□□ -0.21
UPF1-204ENST00000596842 CXADRP78310 365 aa13.77□□□□□ -0.21
UPF1-204ENST00000596842 ACKR1Q16570 336 aa13.77□□□□□ -0.21
UPF1-204ENST00000596842 MOGAT2Q3SYC2 334 aa13.77□□□□□ -0.21
UPF1-204ENST00000596842 SLC22A6Q4U2R8 563 aa13.77□□□□□ -0.21
UPF1-204ENST00000596842 ANKRD16Q6P6B7 361 aa13.77□□□□□ -0.21
UPF1-204ENST00000596842 C16orf47Q6ZP98 133 aaPredicted RBP13.77□□□□□ -0.21
UPF1-204ENST00000596842 RAB11FIP2Q7L804 512 aa13.77□□□□□ -0.21
UPF1-204ENST00000596842 GVQW1Q8N7I0 195 aa13.77□□□□□ -0.21
UPF1-204ENST00000596842 OR13C3Q8NGS6 347 aa13.77□□□□□ -0.21
UPF1-204ENST00000596842 ARL5BQ96KC2 179 aa13.77□□□□□ -0.21
UPF1-204ENST00000596842 LURAP1Q96LR2 239 aa13.77□□□□□ -0.21
UPF1-204ENST00000596842 SLC38A3Q99624 504 aa13.77□□□□□ -0.21
UPF1-204ENST00000596842 PCNX3Q9H6A9 2034 aa13.76□□□□□ -0.21
UPF1-204ENST00000596842 C5orf51A6NDU8 294 aa13.76□□□□□ -0.21
UPF1-204ENST00000596842 ZNF736B4DX44 427 aaPredicted RBP13.76□□□□□ -0.21
UPF1-204ENST00000596842 SEMA4FO95754 770 aa13.76□□□□□ -0.21
UPF1-204ENST00000596842 IL5P05113 134 aa13.76□□□□□ -0.21
UPF1-204ENST00000596842 PNMTP11086 282 aa13.76□□□□□ -0.21
UPF1-204ENST00000596842 CD34P28906 385 aa13.76□□□□□ -0.21
UPF1-204ENST00000596842 CTHP32929 405 aa13.76□□□□□ -0.21
UPF1-204ENST00000596842 ARRB1P49407 418 aaPredicted RBP13.76□□□□□ -0.21
UPF1-204ENST00000596842 C1orf189Q5VU69 101 aa13.76□□□□□ -0.21
UPF1-204ENST00000596842 FAM122BQ7Z309 247 aa13.76□□□□□ -0.21
UPF1-204ENST00000596842 CDC20BQ86Y33 519 aa13.76□□□□□ -0.21
UPF1-204ENST00000596842 CCDC36Q8IYA8 594 aa13.76□□□□□ -0.21
UPF1-204ENST00000596842 EID2Q8N6I1 236 aa13.76□□□□□ -0.21
UPF1-204ENST00000596842 RNF166Q96A37 237 aaPredicted RBP13.76□□□□□ -0.21
UPF1-204ENST00000596842 SLC25A28Q96A46 364 aa13.76□□□□□ -0.21
UPF1-204ENST00000596842 POTEKPQ9BYX7 375 aa13.76□□□□□ -0.21
UPF1-204ENST00000596842 TMEM231Q9H6L2 316 aa13.76□□□□□ -0.21
UPF1-204ENST00000596842 HIF3AQ9Y2N7 669 aa13.76□□□□□ -0.21
UPF1-204ENST00000596842 OR2A4O95047 310 aa13.76□□□□□ -0.21
UPF1-204ENST00000596842 MST1P26927 711 aa13.76□□□□□ -0.21
UPF1-204ENST00000596842 AVPR2P30518 371 aa13.76□□□□□ -0.21
UPF1-204ENST00000596842 RAB5BP61020 215 aa13.76□□□□□ -0.21
UPF1-204ENST00000596842 ATG4DQ86TL0 474 aaPredicted RBP13.76□□□□□ -0.21
UPF1-204ENST00000596842 MARVELD3Q96A59 401 aa13.76□□□□□ -0.21
UPF1-204ENST00000596842 OR2A7Q96R45 310 aa13.76□□□□□ -0.21
UPF1-204ENST00000596842 SPSB2Q99619 263 aa13.76□□□□□ -0.21
UPF1-204ENST00000596842 TAS2R8Q9NYW2 309 aa13.76□□□□□ -0.21
UPF1-204ENST00000596842 SRPX2O60687 465 aaPredicted RBP13.76□□□□□ -0.21
UPF1-204ENST00000596842 HTR2CP28335 458 aa13.76□□□□□ -0.21
UPF1-204ENST00000596842 Q3ZCU0 254 aa13.76□□□□□ -0.21
UPF1-204ENST00000596842 SLC36A1Q7Z2H8 476 aa13.76□□□□□ -0.21
UPF1-204ENST00000596842 DPPA2Q7Z7J5 298 aa13.76□□□□□ -0.21
UPF1-204ENST00000596842 HIST2H2ABQ8IUE6 130 aaPredicted RBP13.76□□□□□ -0.21
UPF1-204ENST00000596842 OR1S1Q8NH92 325 aa13.76□□□□□ -0.21
UPF1-204ENST00000596842 EVA1AQ9H8M9 152 aa13.76□□□□□ -0.21
UPF1-204ENST00000596842 ASF1BQ9NVP2 202 aa13.76□□□□□ -0.21
UPF1-204ENST00000596842 MSRAQ9UJ68 235 aa13.76□□□□□ -0.21
UPF1-204ENST00000596842 COA3Q9Y2R0 106 aaPredicted RBP13.76□□□□□ -0.21
UPF1-204ENST00000596842 TMEM14AQ9Y6G1 99 aa13.76□□□□□ -0.21
UPF1-204ENST00000596842 LOC100289279A0A1B0GTE1 492 aa13.75□□□□□ -0.21
UPF1-204ENST00000596842 ZNF749O43361 778 aa13.75□□□□□ -0.21
UPF1-204ENST00000596842 CTLA4P16410 223 aa13.75□□□□□ -0.21
UPF1-204ENST00000596842 CEBPGP53567 150 aa13.75□□□□□ -0.21
UPF1-204ENST00000596842 FMODQ06828 376 aa13.75□□□□□ -0.21
UPF1-204ENST00000596842 RASGEF1BQ0VAM2 473 aa13.75□□□□□ -0.21
UPF1-204ENST00000596842 OR7A5Q15622 319 aa13.75□□□□□ -0.21
UPF1-204ENST00000596842 CDH26Q8IXH8 852 aa13.75□□□□□ -0.21
UPF1-204ENST00000596842 ZNF784Q8NCA9 323 aaPredicted RBP13.75□□□□□ -0.21
UPF1-204ENST00000596842 C15orf40Q8WUR7 153 aa13.75□□□□□ -0.21
UPF1-204ENST00000596842 NUDCD2Q8WVJ2 157 aa13.75□□□□□ -0.21
UPF1-204ENST00000596842 SCARF2Q96GP6 870 aaPredicted RBP13.75□□□□□ -0.21
UPF1-204ENST00000596842 FAM86C1Q9NVL1 165 aa13.75□□□□□ -0.21
UPF1-204ENST00000596842 RNF215Q9Y6U7 377 aa13.75□□□□□ -0.21
UPF1-204ENST00000596842 PIAS3Q9Y6X2 628 aa13.75□□□□□ -0.21
UPF1-204ENST00000596842 OR5H14A6NHG9 310 aa13.75□□□□□ -0.21
UPF1-204ENST00000596842 D6RAR5 112 aa13.75□□□□□ -0.21
UPF1-204ENST00000596842 GLT8D1Q68CQ7 371 aa13.75□□□□□ -0.21
UPF1-204ENST00000596842 ZNF584Q8IVC4 421 aa13.75□□□□□ -0.21
UPF1-204ENST00000596842 ARMC10Q8N2F6 343 aa13.75□□□□□ -0.21
UPF1-204ENST00000596842 BVESQ8NE79 360 aa13.75□□□□□ -0.21
UPF1-204ENST00000596842 PXT1Q8NFP0 134 aa13.75□□□□□ -0.21
UPF1-204ENST00000596842 OR6N1Q8NGY5 312 aa13.75□□□□□ -0.21
UPF1-204ENST00000596842 VRK1Q99986 396 aaPredicted RBP13.75□□□□□ -0.21
UPF1-204ENST00000596842 SEMA6CQ9H3T2 930 aa13.75□□□□□ -0.21
UPF1-204ENST00000596842 PCOLCE2Q9UKZ9 415 aa13.75□□□□□ -0.21
UPF1-204ENST00000596842 OR2AT4A6NND4 320 aa13.75□□□□□ -0.21
UPF1-204ENST00000596842 ABHD16AO95870 558 aa13.75□□□□□ -0.21
UPF1-204ENST00000596842 ARL4DP49703 201 aa13.75□□□□□ -0.21
UPF1-204ENST00000596842 RIDAP52758 137 aaKnown RBP13.75□□□□□ -0.21
UPF1-204ENST00000596842 SLC18B1Q6NT16 456 aa13.75□□□□□ -0.21
UPF1-204ENST00000596842 CCDC107Q8WV48 283 aa13.75□□□□□ -0.21
UPF1-204ENST00000596842 ELSPBP1Q96BH3 223 aa13.75□□□□□ -0.21
Retrieved 100 of 20,778 RNA–protein pairs in 48.2 ms