RNA–Protein interactions for RNA: ENST00000593582.5

TRIM28-203, Transcript of tripartite motif containing 28, humanhuman

TSL 3

Gene TRIM28, Length 533 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-203ENST00000593582 CDKN2AP42771 156 aaKnown RBP13.05□□□□□ -0.32
TRIM28-203ENST00000593582 MAGEB1P43366 347 aa13.05□□□□□ -0.32
TRIM28-203ENST00000593582 TMEM33P57088 247 aa13.05□□□□□ -0.32
TRIM28-203ENST00000593582 PPP1CBP62140 327 aa13.05□□□□□ -0.32
TRIM28-203ENST00000593582 LSM6P62312 80 aaKnown RBP13.05□□□□□ -0.32
TRIM28-203ENST00000593582 CCL8P80075 99 aa13.05□□□□□ -0.32
TRIM28-203ENST00000593582 GLO1Q04760 184 aa13.05□□□□□ -0.32
TRIM28-203ENST00000593582 AQP6Q13520 282 aa13.05□□□□□ -0.32
TRIM28-203ENST00000593582 MBNL2Q5VZF2 373 aaKnown RBP13.05□□□□□ -0.32
TRIM28-203ENST00000593582 PTCHD4Q6ZW05 846 aa13.05□□□□□ -0.32
TRIM28-203ENST00000593582 JAZF1Q86VZ6 243 aa13.05□□□□□ -0.32
TRIM28-203ENST00000593582 SLC25A40Q8TBP6 338 aa13.05□□□□□ -0.32
TRIM28-203ENST00000593582 KLF14Q8TD94 323 aaPredicted RBP13.05□□□□□ -0.32
TRIM28-203ENST00000593582 MARS2Q96GW9 593 aaKnown RBP13.05□□□□□ -0.32
TRIM28-203ENST00000593582 C4orf45Q96LM5 186 aa13.05□□□□□ -0.32
TRIM28-203ENST00000593582 IFT27Q9BW83 186 aa13.05□□□□□ -0.32
TRIM28-203ENST00000593582 OR2J1Q9GZK6 312 aa13.05□□□□□ -0.32
TRIM28-203ENST00000593582 NUAK2Q9H093 628 aa13.05□□□□□ -0.32
TRIM28-203ENST00000593582 SHARPINQ9H0F6 387 aa13.05□□□□□ -0.32
TRIM28-203ENST00000593582 MUC13Q9H3R2 512 aa13.05□□□□□ -0.32
TRIM28-203ENST00000593582 LPAR3Q9UBY5 353 aa13.05□□□□□ -0.32
TRIM28-203ENST00000593582 CHD3Q12873 2000 aaKnown RBP13.05□□□□□ -0.32
TRIM28-203ENST00000593582 H3BSA7 217 aa13.04□□□□□ -0.32
TRIM28-203ENST00000593582 ARPC3O15145 178 aa13.04□□□□□ -0.32
TRIM28-203ENST00000593582 ABHD16AO95870 558 aa13.04□□□□□ -0.32
TRIM28-203ENST00000593582 TGFAP01135 160 aa13.04□□□□□ -0.32
TRIM28-203ENST00000593582 ATP6V1B2P21281 511 aa13.04□□□□□ -0.32
TRIM28-203ENST00000593582 GPR6P46095 362 aaPredicted RBP13.04□□□□□ -0.32
TRIM28-203ENST00000593582 HTR5AP47898 357 aa13.04□□□□□ -0.32
TRIM28-203ENST00000593582 CENPAP49450 140 aa13.04□□□□□ -0.32
TRIM28-203ENST00000593582 ZNF81P51508 661 aa13.04□□□□□ -0.32
TRIM28-203ENST00000593582 TRIP10Q15642 601 aa13.04□□□□□ -0.32
TRIM28-203ENST00000593582 C1orf94Q6P1W5 598 aa13.04□□□□□ -0.32
TRIM28-203ENST00000593582 RFPL4BQ6ZWI9 263 aa13.04□□□□□ -0.32
TRIM28-203ENST00000593582 DHFR2Q86XF0 187 aa13.04□□□□□ -0.32
TRIM28-203ENST00000593582 LINC00471Q8N535 108 aa13.04□□□□□ -0.32
TRIM28-203ENST00000593582 GNPDA2Q8TDQ7 276 aa13.04□□□□□ -0.32
TRIM28-203ENST00000593582 IPCEF1Q8WWN9 437 aaPredicted RBP13.04□□□□□ -0.32
TRIM28-203ENST00000593582 SAMD8Q96LT4 415 aa13.04□□□□□ -0.32
TRIM28-203ENST00000593582 CYSLTR2Q9NS75 346 aa13.04□□□□□ -0.32
TRIM28-203ENST00000593582 DECR2Q9NUI1 292 aa13.04□□□□□ -0.32
TRIM28-203ENST00000593582 NKIRAS2Q9NYR9 191 aa13.04□□□□□ -0.32
TRIM28-203ENST00000593582 PLEK2Q9NYT0 353 aa13.04□□□□□ -0.32
TRIM28-203ENST00000593582 ASH2LQ9UBL3 628 aa13.04□□□□□ -0.32
TRIM28-203ENST00000593582 POLR1DQ9Y2S0 133 aa13.04□□□□□ -0.32
TRIM28-203ENST00000593582 TNFRSF11BO00300 401 aa13.03□□□□□ -0.32
TRIM28-203ENST00000593582 TPD52L2O43399 206 aaKnown RBP13.03□□□□□ -0.32
TRIM28-203ENST00000593582 PPIHO43447 177 aaKnown RBP13.03□□□□□ -0.32
TRIM28-203ENST00000593582 IDH3BO43837 385 aa13.03□□□□□ -0.32
TRIM28-203ENST00000593582 MPZL1O95297 269 aa13.03□□□□□ -0.32
TRIM28-203ENST00000593582 RENP00797 406 aa13.03□□□□□ -0.32
TRIM28-203ENST00000593582 NGFP01138 241 aa13.03□□□□□ -0.32
TRIM28-203ENST00000593582 FAM157CP0CG43 387 aa13.03□□□□□ -0.32
TRIM28-203ENST00000593582 LIPAP38571 399 aa13.03□□□□□ -0.32
TRIM28-203ENST00000593582 MPV17P39210 176 aa13.03□□□□□ -0.32
TRIM28-203ENST00000593582 MAGEA2P43356 314 aa13.03□□□□□ -0.32
TRIM28-203ENST00000593582 GSSP48637 474 aa13.03□□□□□ -0.32
TRIM28-203ENST00000593582 HMGA2P52926 109 aa13.03□□□□□ -0.32
TRIM28-203ENST00000593582 TEKQ02763 1124 aa13.03□□□□□ -0.32
TRIM28-203ENST00000593582 TSPAN31Q12999 210 aa13.03□□□□□ -0.32
TRIM28-203ENST00000593582 TRIM25Q14258 630 aaKnown RBP13.03□□□□□ -0.32
TRIM28-203ENST00000593582 LCN8Q6JVE9 175 aa13.03□□□□□ -0.32
TRIM28-203ENST00000593582 PGBD2Q6P3X8 592 aa13.03□□□□□ -0.32
TRIM28-203ENST00000593582 LEG1Q6P5S2 330 aa13.03□□□□□ -0.32
TRIM28-203ENST00000593582 PGM2L1Q6PCE3 622 aa13.03□□□□□ -0.32
TRIM28-203ENST00000593582 RINLQ6ZS11 566 aa13.03□□□□□ -0.32
TRIM28-203ENST00000593582 VASH1Q7L8A9 365 aaPredicted RBP13.03□□□□□ -0.32
TRIM28-203ENST00000593582 POP5Q969H6 163 aaKnown RBP13.03□□□□□ -0.32
TRIM28-203ENST00000593582 YIPF5Q969M3 257 aa13.03□□□□□ -0.32
TRIM28-203ENST00000593582 TSSK2Q96PF2 358 aa13.03□□□□□ -0.32
TRIM28-203ENST00000593582 NMNAT3Q96T66 252 aa13.03□□□□□ -0.32
TRIM28-203ENST00000593582 MAGIXQ9H6Y5 334 aa13.03□□□□□ -0.32
TRIM28-203ENST00000593582 ZNF275Q9NSD4 429 aaPredicted RBP13.03□□□□□ -0.32
TRIM28-203ENST00000593582 TBCCD1Q9NVR7 557 aa13.03□□□□□ -0.32
TRIM28-203ENST00000593582 CGGBP1Q9UFW8 167 aaPredicted RBP13.03□□□□□ -0.32
TRIM28-203ENST00000593582 PRPF19Q9UMS4 504 aaKnown RBP13.03□□□□□ -0.32
TRIM28-203ENST00000593582 LYVE1Q9Y5Y7 322 aa13.03□□□□□ -0.32
TRIM28-203ENST00000593582 YLPM1P49750 1951 aaKnown RBP13.02□□□□□ -0.32
TRIM28-203ENST00000593582 CDC14BO60729 498 aa13.02□□□□□ -0.33
TRIM28-203ENST00000593582 HIST1H1CP16403 213 aaKnown RBP13.02□□□□□ -0.33
TRIM28-203ENST00000593582 HNF1AP20823 631 aa13.02□□□□□ -0.33
TRIM28-203ENST00000593582 GSTM3P21266 225 aa13.02□□□□□ -0.33
TRIM28-203ENST00000593582 TUBG1P23258 451 aa13.02□□□□□ -0.33
TRIM28-203ENST00000593582 IL2RGP31785 369 aa13.02□□□□□ -0.33
TRIM28-203ENST00000593582 CCNIQ14094 377 aa13.02□□□□□ -0.33
TRIM28-203ENST00000593582 KCNMB1Q16558 191 aa13.02□□□□□ -0.33
TRIM28-203ENST00000593582 TSTQ16762 297 aaKnown RBP13.02□□□□□ -0.33
TRIM28-203ENST00000593582 ZMAT1Q5H9K5 638 aa13.02□□□□□ -0.33
TRIM28-203ENST00000593582 FAM209AQ5JX71 171 aa13.02□□□□□ -0.33
TRIM28-203ENST00000593582 OTPQ5XKR4 325 aa13.02□□□□□ -0.33
TRIM28-203ENST00000593582 RPL13AP3Q6NVV1 102 aa13.02□□□□□ -0.33
TRIM28-203ENST00000593582 ZNF620Q6ZNG0 422 aa13.02□□□□□ -0.33
TRIM28-203ENST00000593582 ZSCAN2Q7Z7L9 614 aaPredicted RBP13.02□□□□□ -0.33
TRIM28-203ENST00000593582 LINC01356Q8N9X3 169 aa13.02□□□□□ -0.33
TRIM28-203ENST00000593582 NPEPL1Q8NDH3 523 aa13.02□□□□□ -0.33
TRIM28-203ENST00000593582 OR52L1Q8NGH7 329 aa13.02□□□□□ -0.33
TRIM28-203ENST00000593582 OR4K13Q8NH42 304 aa13.02□□□□□ -0.33
TRIM28-203ENST00000593582 OR1F12Q8NHA8 337 aa13.02□□□□□ -0.33
TRIM28-203ENST00000593582 GTF3AQ92664 365 aaKnown RBP13.02□□□□□ -0.33
TRIM28-203ENST00000593582 SOX7Q9BT81 388 aa13.02□□□□□ -0.33
Retrieved 100 of 20,778 RNA–protein pairs in 59.6 ms