RNA–Protein interactions for RNA: ENST00000593099.5

LIG3-216, Transcript of DNA ligase 3, humanhuman

TSL 2

Gene LIG3, Length 4,664 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-216ENST00000593099 TRBV5-3A0A0A0MS03 114 aa8.84□□□□□ -0.99
LIG3-216ENST00000593099 PRR19A6NJB7 356 aa8.84□□□□□ -0.99
LIG3-216ENST00000593099 NUPL2O15504 423 aaKnown RBP8.84□□□□□ -0.99
LIG3-216ENST00000593099 IGFBP1P08833 259 aaPredicted RBP8.84□□□□□ -0.99
LIG3-216ENST00000593099 HOXD4P09016 255 aaPredicted RBP8.84□□□□□ -0.99
LIG3-216ENST00000593099 ZNF44P15621 663 aa8.84□□□□□ -0.99
LIG3-216ENST00000593099 SCGB2B2Q4G0G5 96 aa8.84□□□□□ -0.99
LIG3-216ENST00000593099 ZNF584Q8IVC4 421 aa8.84□□□□□ -0.99
LIG3-216ENST00000593099 OR6V1Q8N148 313 aa8.84□□□□□ -0.99
LIG3-216ENST00000593099 OR13C9Q8NGT0 318 aa8.84□□□□□ -0.99
LIG3-216ENST00000593099 AKR7LQ8NHP1 331 aa8.84□□□□□ -0.99
LIG3-216ENST00000593099 LIPHQ8WWY8 451 aa8.84□□□□□ -0.99
LIG3-216ENST00000593099 BOD1Q96IK1 185 aa8.84□□□□□ -0.99
LIG3-216ENST00000593099 MRI1Q9BV20 369 aa8.84□□□□□ -0.99
LIG3-216ENST00000593099 MMP27Q9H306 513 aa8.84□□□□□ -0.99
LIG3-216ENST00000593099 PSORS1C1Q9UIG5 152 aa8.84□□□□□ -0.99
LIG3-216ENST00000593099 FBXL2Q9UKC9 423 aa8.84□□□□□ -0.99
LIG3-216ENST00000593099 AK6Q9Y3D8 172 aaKnown RBP8.84□□□□□ -0.99
LIG3-216ENST00000593099 FRMPD3Q5JV73 1810 aa8.84□□□□□ -0.99
LIG3-216ENST00000593099 LRRC30A6NM36 301 aa8.84□□□□□ -0.99
LIG3-216ENST00000593099 CDX4O14627 284 aaPredicted RBP8.84□□□□□ -0.99
LIG3-216ENST00000593099 EFSO43281 561 aa8.84□□□□□ -0.99
LIG3-216ENST00000593099 SERPINA5P05154 406 aa8.84□□□□□ -0.99
LIG3-216ENST00000593099 SERPINF1P36955 418 aa8.84□□□□□ -0.99
LIG3-216ENST00000593099 NBL1P41271 181 aa8.84□□□□□ -0.99
LIG3-216ENST00000593099 RAD52P43351 418 aa8.84□□□□□ -0.99
LIG3-216ENST00000593099 IGLV3-21P80748 117 aaPredicted RBP8.84□□□□□ -0.99
LIG3-216ENST00000593099 SPOCK1Q08629 439 aa8.84□□□□□ -0.99
LIG3-216ENST00000593099 PAN3Q58A45 887 aaKnown RBP8.84□□□□□ -0.99
LIG3-216ENST00000593099 ANKRD34AQ69YU3 496 aa8.84□□□□□ -0.99
LIG3-216ENST00000593099 ZNF767PQ75MW2 155 aa8.84□□□□□ -0.99
LIG3-216ENST00000593099 BCDIN3DQ7Z5W3 292 aaKnown RBP8.84□□□□□ -0.99
LIG3-216ENST00000593099 STEAP2Q8NFT2 490 aa8.84□□□□□ -0.99
LIG3-216ENST00000593099 OR51T1Q8NGJ9 327 aa8.84□□□□□ -0.99
LIG3-216ENST00000593099 C7orf50Q9BRJ6 194 aaKnown RBP8.84□□□□□ -0.99
LIG3-216ENST00000593099 FUNDC2Q9BWH2 189 aa8.84□□□□□ -0.99
LIG3-216ENST00000593099 ANGPTL4Q9BY76 406 aa8.84□□□□□ -0.99
LIG3-216ENST00000593099 AKIRIN1Q9H9L7 192 aaPredicted RBP8.84□□□□□ -0.99
LIG3-216ENST00000593099 MAN2C1Q9NTJ4 1040 aa8.84□□□□□ -0.99
LIG3-216ENST00000593099 B3GAT1Q9P2W7 334 aa8.84□□□□□ -0.99
LIG3-216ENST00000593099 PLXNA3P51805 1871 aa8.84□□□□□ -0.99
LIG3-216ENST00000593099 ZAR1LA6NP61 321 aa8.84□□□□□ -0.99
LIG3-216ENST00000593099 HSPB2A8KAH6 182 aa8.84□□□□□ -0.99
LIG3-216ENST00000593099 M0R135 149 aa8.84□□□□□ -0.99
LIG3-216ENST00000593099 DLGAP1O14490 977 aa8.84□□□□□ -0.99
LIG3-216ENST00000593099 RBBP9O75884 186 aa8.84□□□□□ -0.99
LIG3-216ENST00000593099 SLC2A1P11166 492 aa8.84□□□□□ -0.99
LIG3-216ENST00000593099 AGFG1P52594 562 aaKnown RBP8.84□□□□□ -0.99
LIG3-216ENST00000593099 MTCP1P56278 107 aa8.84□□□□□ -0.99
LIG3-216ENST00000593099 CD83Q01151 205 aa8.84□□□□□ -0.99
LIG3-216ENST00000593099 MAB21L1Q13394 359 aa8.84□□□□□ -0.99
LIG3-216ENST00000593099 HSPB2Q16082 182 aa8.84□□□□□ -0.99
LIG3-216ENST00000593099 ZNF718Q3SXZ3 478 aa8.84□□□□□ -0.99
LIG3-216ENST00000593099 TMEM251Q8N6I4 163 aa8.84□□□□□ -0.99
LIG3-216ENST00000593099 IL17RDQ8NFM7 739 aa8.84□□□□□ -0.99
LIG3-216ENST00000593099 ZNF799Q96GE5 643 aa8.84□□□□□ -0.99
LIG3-216ENST00000593099 TSSK2Q96PF2 358 aa8.84□□□□□ -0.99
LIG3-216ENST00000593099 SLC30A2Q9BRI3 323 aa8.84□□□□□ -0.99
LIG3-216ENST00000593099 ENAMQ9NRM1 1142 aa8.84□□□□□ -0.99
LIG3-216ENST00000593099 B9D1Q9UPM9 204 aa8.84□□□□□ -0.99
LIG3-216ENST00000593099 ZFHX2Q9C0A1 2572 aaPredicted RBP8.84□□□□□ -0.99
LIG3-216ENST00000593099 ARHGEF17Q96PE2 2063 aaPredicted RBP8.83□□□□□ -1
LIG3-216ENST00000593099 C5orf49A4QMS7 147 aa8.83□□□□□ -1
LIG3-216ENST00000593099 J3QR89 54 aa8.83□□□□□ -1
LIG3-216ENST00000593099 P2RY10O00398 339 aa8.83□□□□□ -1
LIG3-216ENST00000593099 CCL21O00585 134 aa8.83□□□□□ -1
LIG3-216ENST00000593099 TGM4P49221 684 aa8.83□□□□□ -1
LIG3-216ENST00000593099 CX3CR1P49238 355 aa8.83□□□□□ -1
LIG3-216ENST00000593099 SKP2Q13309 424 aa8.83□□□□□ -1
LIG3-216ENST00000593099 BAIAP2L2Q6UXY1 529 aa8.83□□□□□ -1
LIG3-216ENST00000593099 SLC38A9Q8NBW4 561 aa8.83□□□□□ -1
LIG3-216ENST00000593099 SLCO4A1Q96BD0 722 aa8.83□□□□□ -1
LIG3-216ENST00000593099 SLC25A18Q9H1K4 315 aa8.83□□□□□ -1
LIG3-216ENST00000593099 NTN4Q9HB63 628 aa8.83□□□□□ -1
LIG3-216ENST00000593099 CPNE5Q9HCH3 593 aa8.83□□□□□ -1
LIG3-216ENST00000593099 SCP2D1Q9UJQ7 156 aa8.83□□□□□ -1
LIG3-216ENST00000593099 HIF3AQ9Y2N7 669 aa8.83□□□□□ -1
LIG3-216ENST00000593099 PLXNA4Q9HCM2 1894 aa8.83□□□□□ -1
LIG3-216ENST00000593099 RP1P56715 2156 aa8.83□□□□□ -1
LIG3-216ENST00000593099 A0A1B0GTH9 108 aa8.83□□□□□ -1
LIG3-216ENST00000593099 UBL3O95164 117 aa8.83□□□□□ -1
LIG3-216ENST00000593099 ZNF17P17021 662 aa8.83□□□□□ -1
LIG3-216ENST00000593099 ALKBH1Q13686 389 aaKnown RBP8.83□□□□□ -1
LIG3-216ENST00000593099 SLC22A6Q4U2R8 563 aa8.83□□□□□ -1
LIG3-216ENST00000593099 SIMC1Q8NDZ2 872 aa8.83□□□□□ -1
LIG3-216ENST00000593099 CCDC107Q8WV48 283 aa8.83□□□□□ -1
LIG3-216ENST00000593099 TIMD4Q96H15 378 aa8.83□□□□□ -1
LIG3-216ENST00000593099 SF3B5Q9BWJ5 86 aaKnown RBP8.83□□□□□ -1
LIG3-216ENST00000593099 GABARAPL3Q9BY60 117 aa8.83□□□□□ -1
LIG3-216ENST00000593099 C14orf119Q9NWQ9 140 aa8.83□□□□□ -1
LIG3-216ENST00000593099 MRPL22Q9NWU5 206 aaKnown RBP8.83□□□□□ -1
LIG3-216ENST00000593099 ABRACLQ9P1F3 81 aa8.83□□□□□ -1
LIG3-216ENST00000593099 SIGLEC7Q9Y286 467 aa8.83□□□□□ -1
LIG3-216ENST00000593099 OR6C6A6NF89 314 aa8.83□□□□□ -1
LIG3-216ENST00000593099 TSPAN2O60636 221 aa8.83□□□□□ -1
LIG3-216ENST00000593099 SLC2A10O95528 541 aa8.83□□□□□ -1
LIG3-216ENST00000593099 AMY2BP19961 511 aa8.83□□□□□ -1
LIG3-216ENST00000593099 GABRA2P47869 451 aa8.83□□□□□ -1
LIG3-216ENST00000593099 KLRB1Q12918 225 aa8.83□□□□□ -1
LIG3-216ENST00000593099 GPR176Q14439 515 aa8.83□□□□□ -1
Retrieved 100 of 20,778 RNA–protein pairs in 42.5 ms