RNA–Protein interactions for RNA: ENST00000586058.1

LIG3-206, Transcript of DNA ligase 3, humanhuman

TSL 2

Gene LIG3, Length 581 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-206ENST00000586058 ATF6BQ99941 703 aa5.48□□□□□ -1.53
LIG3-206ENST00000586058 ABHD6Q9BV23 337 aa5.48□□□□□ -1.53
LIG3-206ENST00000586058 NAA50Q9GZZ1 169 aaKnown RBP5.48□□□□□ -1.53
LIG3-206ENST00000586058 HDHD2Q9H0R4 259 aa5.48□□□□□ -1.53
LIG3-206ENST00000586058 OR51E2Q9H255 320 aa5.48□□□□□ -1.53
LIG3-206ENST00000586058 C12orf49Q9H741 205 aa5.48□□□□□ -1.53
LIG3-206ENST00000586058 RNF121Q9H920 327 aa5.48□□□□□ -1.53
LIG3-206ENST00000586058 ISG20L2Q9H9L3 353 aaKnown RBP5.48□□□□□ -1.53
LIG3-206ENST00000586058 ELOVL3Q9HB03 270 aa5.48□□□□□ -1.53
LIG3-206ENST00000586058 CRLF2Q9HC73 371 aa5.48□□□□□ -1.53
LIG3-206ENST00000586058 HMG20AQ9NP66 347 aa5.48□□□□□ -1.53
LIG3-206ENST00000586058 POLE4Q9NR33 117 aa5.48□□□□□ -1.53
LIG3-206ENST00000586058 TXNL4BQ9NX01 149 aaKnown RBP5.48□□□□□ -1.53
LIG3-206ENST00000586058 PLEK2Q9NYT0 353 aa5.48□□□□□ -1.53
LIG3-206ENST00000586058 SPRR3Q9UBC9 169 aa5.48□□□□□ -1.53
LIG3-206ENST00000586058 ASH2LQ9UBL3 628 aa5.48□□□□□ -1.53
LIG3-206ENST00000586058 GDF2Q9UK05 429 aaPredicted RBP5.48□□□□□ -1.53
LIG3-206ENST00000586058 ADAM30Q9UKF2 790 aa5.48□□□□□ -1.53
LIG3-206ENST00000586058 COPS3Q9UNS2 423 aa5.48□□□□□ -1.53
LIG3-206ENST00000586058 LRP12Q9Y561 859 aa5.48□□□□□ -1.53
LIG3-206ENST00000586058 ZNF292O60281 2723 aa5.48□□□□□ -1.53
LIG3-206ENST00000586058 GTF3C1Q12789 2109 aa5.48□□□□□ -1.53
LIG3-206ENST00000586058 A0A087WV48 116 aa5.47□□□□□ -1.53
LIG3-206ENST00000586058 A0A1B0GVI7 797 aa5.47□□□□□ -1.53
LIG3-206ENST00000586058 TMEM269A0A1B0GVZ9 245 aa5.47□□□□□ -1.53
LIG3-206ENST00000586058 FAM181BA6NEQ2 426 aa5.47□□□□□ -1.53
LIG3-206ENST00000586058 CD8B2A6NJW9 211 aa5.47□□□□□ -1.53
LIG3-206ENST00000586058 PSMD9O00233 223 aa5.47□□□□□ -1.53
LIG3-206ENST00000586058 TAF4O00268 1085 aa5.47□□□□□ -1.53
LIG3-206ENST00000586058 RGS5O15539 181 aa5.47□□□□□ -1.53
LIG3-206ENST00000586058 DOK2O60496 412 aa5.47□□□□□ -1.53
LIG3-206ENST00000586058 SS18L1O75177 396 aaPredicted RBP5.47□□□□□ -1.53
LIG3-206ENST00000586058 UBL3O95164 117 aa5.47□□□□□ -1.53
LIG3-206ENST00000586058 ATE1O95260 518 aa5.47□□□□□ -1.53
LIG3-206ENST00000586058 GPANK1O95872 356 aa5.47□□□□□ -1.53
LIG3-206ENST00000586058 IL1AP01583 271 aa5.47□□□□□ -1.53
LIG3-206ENST00000586058 IL2RAP01589 272 aa5.47□□□□□ -1.53
LIG3-206ENST00000586058 ANXA2P07355 339 aaKnown RBP5.47□□□□□ -1.53
LIG3-206ENST00000586058 CST2P09228 141 aa5.47□□□□□ -1.53
LIG3-206ENST00000586058 OCM2P0CE71 109 aa5.47□□□□□ -1.53
LIG3-206ENST00000586058 OCMP0CE72 109 aaPredicted RBP5.47□□□□□ -1.53
LIG3-206ENST00000586058 CD8BP10966 210 aa5.47□□□□□ -1.53
LIG3-206ENST00000586058 B4GALT1P15291 398 aa5.47□□□□□ -1.53
LIG3-206ENST00000586058 AGTR1P30556 359 aa5.47□□□□□ -1.53
LIG3-206ENST00000586058 DCTDP32321 178 aa5.47□□□□□ -1.53
LIG3-206ENST00000586058 PSMB10P40306 273 aa5.47□□□□□ -1.53
LIG3-206ENST00000586058 RPS27P42677 84 aaKnown RBP5.47□□□□□ -1.53
LIG3-206ENST00000586058 CCR9P51686 369 aa5.47□□□□□ -1.53
LIG3-206ENST00000586058 ZNF133P52736 654 aaPredicted RBP5.47□□□□□ -1.53
LIG3-206ENST00000586058 HCCSP53701 268 aa5.47□□□□□ -1.53
LIG3-206ENST00000586058 PSMA6P60900 246 aaKnown RBP5.47□□□□□ -1.53
LIG3-206ENST00000586058 ROM1Q03395 351 aa5.47□□□□□ -1.53
LIG3-206ENST00000586058 PLP2Q04941 152 aa5.47□□□□□ -1.53
LIG3-206ENST00000586058 KLRB1Q12918 225 aa5.47□□□□□ -1.53
LIG3-206ENST00000586058 ECH1Q13011 328 aa5.47□□□□□ -1.53
LIG3-206ENST00000586058 RAB35Q15286 201 aa5.47□□□□□ -1.53
LIG3-206ENST00000586058 ETFDHQ16134 617 aa5.47□□□□□ -1.53
LIG3-206ENST00000586058 CTF1Q16619 201 aa5.47□□□□□ -1.53
LIG3-206ENST00000586058 ZNF404Q494X3 552 aa5.47□□□□□ -1.53
LIG3-206ENST00000586058 Q499Y3 187 aa5.47□□□□□ -1.53
LIG3-206ENST00000586058 HSD17B12Q53GQ0 312 aa5.47□□□□□ -1.53
LIG3-206ENST00000586058 C4orf48Q5BLP8 95 aa5.47□□□□□ -1.53
LIG3-206ENST00000586058 C1orf185Q5T7R7 199 aa5.47□□□□□ -1.53
LIG3-206ENST00000586058 TMEM244Q5VVB8 128 aa5.47□□□□□ -1.53
LIG3-206ENST00000586058 LIPNQ5VXI9 398 aa5.47□□□□□ -1.53
LIG3-206ENST00000586058 MZT2AQ6P582 158 aa5.47□□□□□ -1.53
LIG3-206ENST00000586058 LRFN4Q6PJG9 635 aa5.47□□□□□ -1.53
LIG3-206ENST00000586058 SSX6Q7RTT6 188 aa5.47□□□□□ -1.53
LIG3-206ENST00000586058 SYT9Q86SS6 491 aa5.47□□□□□ -1.53
LIG3-206ENST00000586058 TPRA1Q86W33 373 aa5.47□□□□□ -1.53
LIG3-206ENST00000586058 ATCAYQ86WG3 371 aa5.47□□□□□ -1.53
LIG3-206ENST00000586058 LRRC18Q8N456 261 aa5.47□□□□□ -1.53
LIG3-206ENST00000586058 RFLNBQ8N5W9 214 aa5.47□□□□□ -1.53
LIG3-206ENST00000586058 RBMXL3Q8N7X1 1067 aaKnown RBP5.47□□□□□ -1.53
LIG3-206ENST00000586058 CNEP1R1Q8N9A8 125 aa5.47□□□□□ -1.53
LIG3-206ENST00000586058 OR6K3Q8NGY3 331 aa5.47□□□□□ -1.53
LIG3-206ENST00000586058 MCFD2Q8NI22 146 aa5.47□□□□□ -1.53
LIG3-206ENST00000586058 NDNFQ8TB73 568 aa5.47□□□□□ -1.53
LIG3-206ENST00000586058 GPR148Q8TDV2 347 aa5.47□□□□□ -1.53
LIG3-206ENST00000586058 SMAP2Q8WU79 429 aaPredicted RBP5.47□□□□□ -1.53
LIG3-206ENST00000586058 ZNRF4Q8WWF5 429 aa5.47□□□□□ -1.53
LIG3-206ENST00000586058 RPL3LQ92901 407 aaKnown RBP5.47□□□□□ -1.53
LIG3-206ENST00000586058 SH3GL3Q99963 347 aa5.47□□□□□ -1.53
LIG3-206ENST00000586058 WDR12Q9GZL7 423 aaKnown RBP5.47□□□□□ -1.53
LIG3-206ENST00000586058 C6orf62Q9GZU0 229 aaPredicted RBP5.47□□□□□ -1.53
LIG3-206ENST00000586058 TP63Q9H3D4 680 aaPredicted RBP5.47□□□□□ -1.53
LIG3-206ENST00000586058 ZFAND3Q9H8U3 227 aa5.47□□□□□ -1.53
LIG3-206ENST00000586058 SIAEQ9HAT2 523 aa5.47□□□□□ -1.53
LIG3-206ENST00000586058 GPR35Q9HC97 309 aa5.47□□□□□ -1.53
LIG3-206ENST00000586058 NEK6Q9HC98 313 aa5.47□□□□□ -1.53
LIG3-206ENST00000586058 TCF7L1Q9HCS4 588 aa5.47□□□□□ -1.53
LIG3-206ENST00000586058 EMC7Q9NPA0 242 aa5.47□□□□□ -1.53
LIG3-206ENST00000586058 TMEM38BQ9NVV0 291 aa5.47□□□□□ -1.53
LIG3-206ENST00000586058 MRPL22Q9NWU5 206 aaKnown RBP5.47□□□□□ -1.53
LIG3-206ENST00000586058 FOXD3Q9UJU5 478 aaPredicted RBP5.47□□□□□ -1.53
LIG3-206ENST00000586058 FBXL3Q9UKT7 428 aa5.47□□□□□ -1.53
LIG3-206ENST00000586058 DHDHQ9UQ10 334 aa5.47□□□□□ -1.53
LIG3-206ENST00000586058 ZNF281Q9Y2X9 895 aa5.47□□□□□ -1.53
LIG3-206ENST00000586058 R4GMQ9 66 aa5.47□□□□□ -1.53
LIG3-206ENST00000586058 MED12Q93074 2177 aa5.46□□□□□ -1.53
Retrieved 100 of 20,778 RNA–protein pairs in 49 ms