RNA–Protein interactions for RNA: ENST00000579640.5

SS18-213, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 2

Gene SS18, Length 1,840 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-213ENST00000579640 HIST2H3AQ71DI3 136 aa9.41□□□□□ -0.9
SS18-213ENST00000579640 DCXRQ7Z4W1 244 aa9.41□□□□□ -0.9
SS18-213ENST00000579640 KCTD20Q7Z5Y7 419 aa9.41□□□□□ -0.9
SS18-213ENST00000579640 LUZP2Q86TE4 346 aa9.41□□□□□ -0.9
SS18-213ENST00000579640 CXorf67Q86X51 503 aaPredicted RBP9.41□□□□□ -0.9
SS18-213ENST00000579640 LIX1LQ8IVB5 337 aa9.41□□□□□ -0.9
SS18-213ENST00000579640 LINC00346Q8IVM7 164 aa9.41□□□□□ -0.9
SS18-213ENST00000579640 SKA3Q8IX90 412 aa9.41□□□□□ -0.9
SS18-213ENST00000579640 SYS1Q8N2H4 156 aa9.41□□□□□ -0.9
SS18-213ENST00000579640 LRRC18Q8N456 261 aa9.41□□□□□ -0.9
SS18-213ENST00000579640 NANOGP1Q8N7R0 232 aa9.41□□□□□ -0.9
SS18-213ENST00000579640 RELL2Q8NC24 303 aaPredicted RBP9.41□□□□□ -0.9
SS18-213ENST00000579640 OR52N5Q8NH56 324 aa9.41□□□□□ -0.9
SS18-213ENST00000579640 HAVCR2Q8TDQ0 301 aa9.41□□□□□ -0.9
SS18-213ENST00000579640 ST7LQ8TDW4 575 aa9.41□□□□□ -0.9
SS18-213ENST00000579640 SMAP2Q8WU79 429 aaPredicted RBP9.41□□□□□ -0.9
SS18-213ENST00000579640 THEM6Q8WUY1 208 aa9.41□□□□□ -0.9
SS18-213ENST00000579640 SNX33Q8WV41 574 aa9.41□□□□□ -0.9
SS18-213ENST00000579640 CCDC120Q96HB5 630 aa9.41□□□□□ -0.9
SS18-213ENST00000579640 SH3GL3Q99963 347 aa9.41□□□□□ -0.9
SS18-213ENST00000579640 ABHD6Q9BV23 337 aa9.41□□□□□ -0.9
SS18-213ENST00000579640 OBP2BQ9NPH6 170 aa9.41□□□□□ -0.9
SS18-213ENST00000579640 TIMM10BQ9Y5J6 103 aa9.41□□□□□ -0.9
SS18-213ENST00000579640 ARPC4-TTLL3A0A0A6YYG9 625 aa9.4□□□□□ -0.9
SS18-213ENST00000579640 RAD51DO75771 328 aa9.4□□□□□ -0.9
SS18-213ENST00000579640 SULT1C4O75897 302 aa9.4□□□□□ -0.9
SS18-213ENST00000579640 LYZL6O75951 148 aa9.4□□□□□ -0.9
SS18-213ENST00000579640 CLPTM1O96005 669 aa9.4□□□□□ -0.9
SS18-213ENST00000579640 KRT8P05787 483 aa9.4□□□□□ -0.9
SS18-213ENST00000579640 PSKH1P11801 424 aa9.4□□□□□ -0.9
SS18-213ENST00000579640 ATP6V1B1P15313 513 aa9.4□□□□□ -0.9
SS18-213ENST00000579640 PAX7P23759 505 aa9.4□□□□□ -0.9
SS18-213ENST00000579640 HOXC12P31275 282 aa9.4□□□□□ -0.9
SS18-213ENST00000579640 ARR3P36575 388 aa9.4□□□□□ -0.9
SS18-213ENST00000579640 RPS27P42677 84 aaKnown RBP9.4□□□□□ -0.9
SS18-213ENST00000579640 UQCRFS1P47985 274 aa9.4□□□□□ -0.9
SS18-213ENST00000579640 ASCL1P50553 236 aa9.4□□□□□ -0.9
SS18-213ENST00000579640 ROM1Q03395 351 aa9.4□□□□□ -0.9
SS18-213ENST00000579640 EMX1Q04741 257 aaPredicted RBP9.4□□□□□ -0.9
SS18-213ENST00000579640 OTPQ5XKR4 325 aa9.4□□□□□ -0.9
SS18-213ENST00000579640 TMEM53Q6P2H8 277 aa9.4□□□□□ -0.9
SS18-213ENST00000579640 BHLHA15Q7RTS1 189 aaPredicted RBP9.4□□□□□ -0.9
SS18-213ENST00000579640 FAM220AQ7Z4H9 259 aa9.4□□□□□ -0.9
SS18-213ENST00000579640 RNF133Q8WVZ7 376 aa9.4□□□□□ -0.9
SS18-213ENST00000579640 HTRA1Q92743 480 aa9.4□□□□□ -0.9
SS18-213ENST00000579640 LRRC46Q96FV0 321 aa9.4□□□□□ -0.9
SS18-213ENST00000579640 OR8B4Q96RC9 309 aa9.4□□□□□ -0.9
SS18-213ENST00000579640 MROQ9BYG7 248 aa9.4□□□□□ -0.9
SS18-213ENST00000579640 OR10A4Q9H209 315 aa9.4□□□□□ -0.9
SS18-213ENST00000579640 ACOT13Q9NPJ3 140 aa9.4□□□□□ -0.9
SS18-213ENST00000579640 CLEC2DQ9UHP7 191 aa9.4□□□□□ -0.9
SS18-213ENST00000579640 KLHDC2Q9Y2U9 406 aa9.4□□□□□ -0.9
SS18-213ENST00000579640 A0A096LPE4 126 aa9.4□□□□□ -0.91
SS18-213ENST00000579640 A0A1W2PPZ6 126 aa9.4□□□□□ -0.91
SS18-213ENST00000579640 ZNF254O75437 659 aa9.4□□□□□ -0.91
SS18-213ENST00000579640 MT-ND5P03915 603 aa9.4□□□□□ -0.91
SS18-213ENST00000579640 MMP7P09237 267 aaPredicted RBP9.4□□□□□ -0.91
SS18-213ENST00000579640 TACSTD2P09758 323 aa9.4□□□□□ -0.91
SS18-213ENST00000579640 ZNF32P17041 273 aa9.4□□□□□ -0.91
SS18-213ENST00000579640 PCMT1P22061 227 aa9.4□□□□□ -0.91
SS18-213ENST00000579640 IL32P24001 234 aa9.4□□□□□ -0.91
SS18-213ENST00000579640 CD79BP40259 229 aa9.4□□□□□ -0.91
SS18-213ENST00000579640 WNT4P56705 351 aa9.4□□□□□ -0.91
SS18-213ENST00000579640 UBE2NP61088 152 aaKnown RBP9.4□□□□□ -0.91
SS18-213ENST00000579640 MRPL28Q13084 256 aaKnown RBP9.4□□□□□ -0.91
SS18-213ENST00000579640 RAB35Q15286 201 aa9.4□□□□□ -0.91
SS18-213ENST00000579640 FBXL19-AS1Q494R0 122 aa9.4□□□□□ -0.91
SS18-213ENST00000579640 HIKESHIQ53FT3 197 aa9.4□□□□□ -0.91
SS18-213ENST00000579640 CORO6Q6QEF8 472 aa9.4□□□□□ -0.91
SS18-213ENST00000579640 STAC2Q6ZMT1 411 aa9.4□□□□□ -0.91
SS18-213ENST00000579640 KCTD8Q6ZWB6 473 aa9.4□□□□□ -0.91
SS18-213ENST00000579640 SSX8Q7RTT4 187 aa9.4□□□□□ -0.91
SS18-213ENST00000579640 SSX6Q7RTT6 188 aa9.4□□□□□ -0.91
SS18-213ENST00000579640 ZNF367Q7RTV3 350 aa9.4□□□□□ -0.91
SS18-213ENST00000579640 KRT77Q7Z794 578 aa9.4□□□□□ -0.91
SS18-213ENST00000579640 P2RY8Q86VZ1 359 aa9.4□□□□□ -0.91
SS18-213ENST00000579640 ZNF679Q8IYX0 411 aa9.4□□□□□ -0.91
SS18-213ENST00000579640 STEAP2Q8NFT2 490 aa9.4□□□□□ -0.91
SS18-213ENST00000579640 LILRB4Q8NHJ6 448 aa9.4□□□□□ -0.91
SS18-213ENST00000579640 SLAMF6Q96DU3 332 aa9.4□□□□□ -0.91
SS18-213ENST00000579640 FBXO17Q96EF6 278 aa9.4□□□□□ -0.91
SS18-213ENST00000579640 MAP6Q96JE9 813 aa9.4□□□□□ -0.91
SS18-213ENST00000579640 HDHD2Q9H0R4 259 aa9.4□□□□□ -0.91
SS18-213ENST00000579640 MOV10Q9HCE1 1003 aaKnown RBP9.4□□□□□ -0.91
SS18-213ENST00000579640 SLC17A5Q9NRA2 495 aa9.4□□□□□ -0.91
SS18-213ENST00000579640 MYO7BQ6PIF6 2116 aa9.39□□□□□ -0.91
SS18-213ENST00000579640 NCOA6Q14686 2063 aaPredicted RBP9.39□□□□□ -0.91
SS18-213ENST00000579640 METTL15A6NJ78 407 aa9.39□□□□□ -0.91
SS18-213ENST00000579640 ZNF878C9JN71 531 aa9.39□□□□□ -0.91
SS18-213ENST00000579640 RER1O15258 196 aa9.39□□□□□ -0.91
SS18-213ENST00000579640 SGCEO43556 437 aa9.39□□□□□ -0.91
SS18-213ENST00000579640 PTHP01270 115 aa9.39□□□□□ -0.91
SS18-213ENST00000579640 JUNBP17275 347 aaPredicted RBP9.39□□□□□ -0.91
SS18-213ENST00000579640 AGAP20933 346 aa9.39□□□□□ -0.91
SS18-213ENST00000579640 MAP2K4P45985 399 aa9.39□□□□□ -0.91
SS18-213ENST00000579640 ECH1Q13011 328 aa9.39□□□□□ -0.91
SS18-213ENST00000579640 ELFN2Q5R3F8 820 aa9.39□□□□□ -0.91
SS18-213ENST00000579640 ZNF684Q5T5D7 378 aa9.39□□□□□ -0.91
SS18-213ENST00000579640 UBE2UQ5VVX9 321 aa9.39□□□□□ -0.91
SS18-213ENST00000579640 TMEM154Q6P9G4 183 aa9.39□□□□□ -0.91
Retrieved 100 of 20,778 RNA–protein pairs in 33.7 ms