RNA–Protein interactions for RNA: ENST00000576019.5

VPS53-219, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 3

Gene VPS53, Length 613 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-219ENST00000576019 BEX1Q9HBH7 125 aa4.72□□□□□ -1.65
VPS53-219ENST00000576019 ZNF302Q9NR11 478 aa4.72□□□□□ -1.65
VPS53-219ENST00000576019 ELOVL2Q9NXB9 296 aa4.72□□□□□ -1.65
VPS53-219ENST00000576019 PPP1R3CQ9UQK1 317 aa4.72□□□□□ -1.65
VPS53-219ENST00000576019 UBIAD1Q9Y5Z9 338 aa4.72□□□□□ -1.65
VPS53-219ENST00000576019 CSNK1G3Q9Y6M4 447 aa4.72□□□□□ -1.65
VPS53-219ENST00000576019 CNTRLQ7Z7A1 2325 aa4.71□□□□□ -1.66
VPS53-219ENST00000576019 IGHV4-4A0A075B6R2 117 aa4.71□□□□□ -1.66
VPS53-219ENST00000576019 IQCMA0A1B0GVH7 501 aa4.71□□□□□ -1.66
VPS53-219ENST00000576019 TMX2-CTNND1H3BSU7 103 aa4.71□□□□□ -1.66
VPS53-219ENST00000576019 SIRPB1O00241 398 aa4.71□□□□□ -1.66
VPS53-219ENST00000576019 NTN3O00634 580 aaPredicted RBP4.71□□□□□ -1.66
VPS53-219ENST00000576019 ZBTB5O15062 677 aa4.71□□□□□ -1.66
VPS53-219ENST00000576019 SCAMP2O15127 329 aaKnown RBP4.71□□□□□ -1.66
VPS53-219ENST00000576019 TYROBPO43914 113 aa4.71□□□□□ -1.66
VPS53-219ENST00000576019 OR7A10O76100 309 aa4.71□□□□□ -1.66
VPS53-219ENST00000576019 SEMA4FO95754 770 aa4.71□□□□□ -1.66
VPS53-219ENST00000576019 CCNE2O96020 404 aa4.71□□□□□ -1.66
VPS53-219ENST00000576019 IFNW1P05000 195 aa4.71□□□□□ -1.66
VPS53-219ENST00000576019 ATP1A1P05023 1023 aaKnown RBP4.71□□□□□ -1.66
VPS53-219ENST00000576019 PMCHP20382 165 aa4.71□□□□□ -1.66
VPS53-219ENST00000576019 SERPINA2P20848 420 aa4.71□□□□□ -1.66
VPS53-219ENST00000576019 IDSP22304 550 aa4.71□□□□□ -1.66
VPS53-219ENST00000576019 OPRL1P41146 370 aa4.71□□□□□ -1.66
VPS53-219ENST00000576019 NAA10P41227 235 aaPredicted RBP4.71□□□□□ -1.66
VPS53-219ENST00000576019 RGRP47804 291 aa4.71□□□□□ -1.66
VPS53-219ENST00000576019 MRPL19P49406 292 aaKnown RBP4.71□□□□□ -1.66
VPS53-219ENST00000576019 MFAP2P55001 183 aa4.71□□□□□ -1.66
VPS53-219ENST00000576019 RPS14P62263 151 aaKnown RBP4.71□□□□□ -1.66
VPS53-219ENST00000576019 CSNK1G2P78368 415 aa4.71□□□□□ -1.66
VPS53-219ENST00000576019 GRB7Q14451 532 aa4.71□□□□□ -1.66
VPS53-219ENST00000576019 NECTIN1Q15223 517 aa4.71□□□□□ -1.66
VPS53-219ENST00000576019 CYTH1Q15438 398 aa4.71□□□□□ -1.66
VPS53-219ENST00000576019 DCST2Q5T1A1 773 aa4.71□□□□□ -1.66
VPS53-219ENST00000576019 GUSBP11Q6P575 273 aa4.71□□□□□ -1.66
VPS53-219ENST00000576019 LRRC8AQ8IWT6 810 aa4.71□□□□□ -1.66
VPS53-219ENST00000576019 SELENOHQ8IZQ5 122 aaKnown RBP4.71□□□□□ -1.66
VPS53-219ENST00000576019 IQCKQ8N0W5 287 aa4.71□□□□□ -1.66
VPS53-219ENST00000576019 ZNF491Q8N8L2 437 aa4.71□□□□□ -1.66
VPS53-219ENST00000576019 GATSQ8NAP1 163 aa4.71□□□□□ -1.66
VPS53-219ENST00000576019 INO80EQ8NBZ0 244 aaPredicted RBP4.71□□□□□ -1.66
VPS53-219ENST00000576019 OR10H4Q8NGA5 316 aa4.71□□□□□ -1.66
VPS53-219ENST00000576019 OR9A4Q8NGU2 314 aa4.71□□□□□ -1.66
VPS53-219ENST00000576019 UFD1Q92890 307 aa4.71□□□□□ -1.66
VPS53-219ENST00000576019 NAT6Q93015 286 aa4.71□□□□□ -1.66
VPS53-219ENST00000576019 ITFG2Q969R8 447 aa4.71□□□□□ -1.66
VPS53-219ENST00000576019 CELF6Q96J87 481 aaKnown RBP4.71□□□□□ -1.66
VPS53-219ENST00000576019 XPO6Q96QU8 1125 aaKnown RBP4.71□□□□□ -1.66
VPS53-219ENST00000576019 CYP2S1Q96SQ9 504 aa4.71□□□□□ -1.66
VPS53-219ENST00000576019 KRTAP9-3Q9BYQ3 159 aa4.71□□□□□ -1.66
VPS53-219ENST00000576019 UCK2Q9BZX2 261 aa4.71□□□□□ -1.66
VPS53-219ENST00000576019 DEPPQ9NTK1 212 aa4.71□□□□□ -1.66
VPS53-219ENST00000576019 PAK1IP1Q9NWT1 392 aaPredicted RBP4.71□□□□□ -1.66
VPS53-219ENST00000576019 ADA2Q9NZK5 511 aa4.71□□□□□ -1.66
VPS53-219ENST00000576019 ADAM22Q9P0K1 906 aa4.71□□□□□ -1.66
VPS53-219ENST00000576019 WRAP73Q9P2S5 460 aaPredicted RBP4.71□□□□□ -1.66
VPS53-219ENST00000576019 LSM7Q9UK45 103 aaKnown RBP4.71□□□□□ -1.66
VPS53-219ENST00000576019 TMCO1Q9UM00 188 aa4.71□□□□□ -1.66
VPS53-219ENST00000576019 GAB2Q9UQC2 676 aa4.71□□□□□ -1.66
VPS53-219ENST00000576019 PCDHGB1Q9Y5G3 927 aa4.71□□□□□ -1.66
VPS53-219ENST00000576019 MYH9P35579 1960 aaKnown RBP4.71□□□□□ -1.66
VPS53-219ENST00000576019 FER1L5A0AVI2 2057 aa4.7□□□□□ -1.66
VPS53-219ENST00000576019 MYOFQ9NZM1 2061 aa4.7□□□□□ -1.66
VPS53-219ENST00000576019 TRBV9A0A0B4J1U6 114 aa4.7□□□□□ -1.66
VPS53-219ENST00000576019 TMEM120BA0PK00 339 aa4.7□□□□□ -1.66
VPS53-219ENST00000576019 C15orf61A6NNL5 157 aa4.7□□□□□ -1.66
VPS53-219ENST00000576019 PP2D1A8MPX8 630 aa4.7□□□□□ -1.66
VPS53-219ENST00000576019 ARHGEF33A8MVX0 844 aa4.7□□□□□ -1.66
VPS53-219ENST00000576019 IDSB3KWA1 339 aa4.7□□□□□ -1.66
VPS53-219ENST00000576019 GFYI3L273 518 aa4.7□□□□□ -1.66
VPS53-219ENST00000576019 K7EQD1 137 aa4.7□□□□□ -1.66
VPS53-219ENST00000576019 NIPSNAP2O75323 286 aa4.7□□□□□ -1.66
VPS53-219ENST00000576019 NDUFS6O75380 124 aaKnown RBP4.7□□□□□ -1.66
VPS53-219ENST00000576019 CEACAM4O75871 244 aa4.7□□□□□ -1.66
VPS53-219ENST00000576019 AP2A2O94973 939 aa4.7□□□□□ -1.66
VPS53-219ENST00000576019 CCNB2O95067 398 aa4.7□□□□□ -1.66
VPS53-219ENST00000576019 PPP1R3DO95685 299 aa4.7□□□□□ -1.66
VPS53-219ENST00000576019 S100A6P06703 90 aa4.7□□□□□ -1.66
VPS53-219ENST00000576019 HOXD4P09016 255 aaPredicted RBP4.7□□□□□ -1.66
VPS53-219ENST00000576019 GATA1P15976 413 aaPredicted RBP4.7□□□□□ -1.66
VPS53-219ENST00000576019 BCL3P20749 454 aa4.7□□□□□ -1.66
VPS53-219ENST00000576019 UGT1A3P35503 534 aa4.7□□□□□ -1.66
VPS53-219ENST00000576019 CRISP1P54107 249 aa4.7□□□□□ -1.66
VPS53-219ENST00000576019 CLDN18P56856 261 aa4.7□□□□□ -1.66
VPS53-219ENST00000576019 UBE2MP61081 183 aaKnown RBP4.7□□□□□ -1.66
VPS53-219ENST00000576019 RND3P61587 244 aa4.7□□□□□ -1.66
VPS53-219ENST00000576019 PSMC5P62195 406 aa4.7□□□□□ -1.66
VPS53-219ENST00000576019 IL18R1Q13478 541 aa4.7□□□□□ -1.66
VPS53-219ENST00000576019 USF2Q15853 346 aaPredicted RBP4.7□□□□□ -1.66
VPS53-219ENST00000576019 EIPR1Q53HC9 387 aa4.7□□□□□ -1.66
VPS53-219ENST00000576019 CARD16Q5EG05 197 aa4.7□□□□□ -1.66
VPS53-219ENST00000576019 MS4A13Q5J8X5 152 aa4.7□□□□□ -1.66
VPS53-219ENST00000576019 FFAR4Q5NUL3 377 aa4.7□□□□□ -1.66
VPS53-219ENST00000576019 C9orf57Q5W0N0 161 aa4.7□□□□□ -1.66
VPS53-219ENST00000576019 C16orf82Q7Z2V1 217 aa4.7□□□□□ -1.66
VPS53-219ENST00000576019 FAM122BQ7Z309 247 aa4.7□□□□□ -1.66
VPS53-219ENST00000576019 APLFQ8IW19 511 aaPredicted RBP4.7□□□□□ -1.66
VPS53-219ENST00000576019 ARHGAP18Q8N392 663 aa4.7□□□□□ -1.66
VPS53-219ENST00000576019 OR2T6Q8NHC8 308 aa4.7□□□□□ -1.66
VPS53-219ENST00000576019 ZPLD1Q8TCW7 415 aa4.7□□□□□ -1.66
Retrieved 100 of 20,778 RNA–protein pairs in 72.5 ms