RNA–Protein interactions for RNA: ENST00000572253.5

CCDC40-207, Transcript of coiled-coil domain containing 40, humanhuman

TSL 2

Gene CCDC40, Length 3,962 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC40-207ENST00000572253 DMRTA2Q96SC8 542 aa9.69□□□□□ -0.86
CCDC40-207ENST00000572253 TSNAXQ99598 290 aaKnown RBP9.69□□□□□ -0.86
CCDC40-207ENST00000572253 ADAM19Q9H013 955 aa9.69□□□□□ -0.86
CCDC40-207ENST00000572253 FBXO4Q9UKT5 387 aa9.69□□□□□ -0.86
CCDC40-207ENST00000572253 ALPK2Q86TB3 2170 aa9.69□□□□□ -0.86
CCDC40-207ENST00000572253 MPTX1A8MV57 137 aa9.69□□□□□ -0.86
CCDC40-207ENST00000572253 IFNA6P05013 189 aa9.69□□□□□ -0.86
CCDC40-207ENST00000572253 HYAL4Q2M3T9 481 aa9.69□□□□□ -0.86
CCDC40-207ENST00000572253 PAN3Q58A45 887 aaKnown RBP9.69□□□□□ -0.86
CCDC40-207ENST00000572253 JMJD6Q6NYC1 403 aaPredicted RBP9.69□□□□□ -0.86
CCDC40-207ENST00000572253 OR2W3Q7Z3T1 314 aa9.69□□□□□ -0.86
CCDC40-207ENST00000572253 CATSPERDQ86XM0 798 aa9.69□□□□□ -0.86
CCDC40-207ENST00000572253 BPIFCQ8NFQ6 507 aa9.69□□□□□ -0.86
CCDC40-207ENST00000572253 STK35Q8TDR2 534 aa9.69□□□□□ -0.86
CCDC40-207ENST00000572253 SEC22AQ96IW7 307 aa9.69□□□□□ -0.86
CCDC40-207ENST00000572253 RPP25Q9BUL9 199 aaKnown RBP9.69□□□□□ -0.86
CCDC40-207ENST00000572253 ABHD6Q9BV23 337 aa9.69□□□□□ -0.86
CCDC40-207ENST00000572253 PTDSS2Q9BVG9 487 aa9.69□□□□□ -0.86
CCDC40-207ENST00000572253 TBL1XR1Q9BZK7 514 aa9.69□□□□□ -0.86
CCDC40-207ENST00000572253 TXNIPQ9H3M7 391 aa9.69□□□□□ -0.86
CCDC40-207ENST00000572253 GAREM1Q9H706 876 aa9.69□□□□□ -0.86
CCDC40-207ENST00000572253 PRMT8Q9NR22 394 aaPredicted RBP9.69□□□□□ -0.86
CCDC40-207ENST00000572253 ZNF230Q9UIE0 474 aaPredicted RBP9.69□□□□□ -0.86
CCDC40-207ENST00000572253 PRAMEF26H0Y7S4 382 aa9.68□□□□□ -0.86
CCDC40-207ENST00000572253 H7C2Y5 167 aa9.68□□□□□ -0.86
CCDC40-207ENST00000572253 ALOX12BO75342 701 aa9.68□□□□□ -0.86
CCDC40-207ENST00000572253 DCNP07585 359 aaKnown RBP9.68□□□□□ -0.86
CCDC40-207ENST00000572253 C1orf61Q13536 156 aa9.68□□□□□ -0.86
CCDC40-207ENST00000572253 TMEM31Q5JXX7 168 aa9.68□□□□□ -0.86
CCDC40-207ENST00000572253 PDSS1Q5T2R2 415 aa9.68□□□□□ -0.86
CCDC40-207ENST00000572253 TMEM244Q5VVB8 128 aa9.68□□□□□ -0.86
CCDC40-207ENST00000572253 OTPQ5XKR4 325 aa9.68□□□□□ -0.86
CCDC40-207ENST00000572253 DNM1P34Q6PK57 102 aa9.68□□□□□ -0.86
CCDC40-207ENST00000572253 BIVMQ86UB2 503 aa9.68□□□□□ -0.86
CCDC40-207ENST00000572253 HIST2H2ABQ8IUE6 130 aaPredicted RBP9.68□□□□□ -0.86
CCDC40-207ENST00000572253 TMEM151BQ8IW70 566 aa9.68□□□□□ -0.86
CCDC40-207ENST00000572253 PPP1R1CQ8WVI7 109 aa9.68□□□□□ -0.86
CCDC40-207ENST00000572253 SLC25A28Q96A46 364 aa9.68□□□□□ -0.86
CCDC40-207ENST00000572253 GMEB2Q9UKD1 530 aa9.68□□□□□ -0.86
CCDC40-207ENST00000572253 FANCMQ8IYD8 2048 aa9.68□□□□□ -0.86
CCDC40-207ENST00000572253 TMEM235A6NFC5 223 aa9.68□□□□□ -0.86
CCDC40-207ENST00000572253 FRG2CA6NGY1 282 aa9.68□□□□□ -0.86
CCDC40-207ENST00000572253 CCSO14618 274 aa9.68□□□□□ -0.86
CCDC40-207ENST00000572253 EIF4E2O60573 245 aaKnown RBP9.68□□□□□ -0.86
CCDC40-207ENST00000572253 AHSA1O95433 338 aa9.68□□□□□ -0.86
CCDC40-207ENST00000572253 SEMA4FO95754 770 aa9.68□□□□□ -0.86
CCDC40-207ENST00000572253 PNPP00491 289 aa9.68□□□□□ -0.86
CCDC40-207ENST00000572253 ATRAIDQ6UW56 229 aa9.68□□□□□ -0.86
CCDC40-207ENST00000572253 CD163Q86VB7 1156 aa9.68□□□□□ -0.86
CCDC40-207ENST00000572253 PRR22Q8IZ63 422 aa9.68□□□□□ -0.86
CCDC40-207ENST00000572253 ARHGEF39Q8N4T4 335 aa9.68□□□□□ -0.86
CCDC40-207ENST00000572253 ACBD4Q8NC06 268 aa9.68□□□□□ -0.86
CCDC40-207ENST00000572253 OR52N5Q8NH56 324 aa9.68□□□□□ -0.86
CCDC40-207ENST00000572253 PTX4Q96A99 478 aa9.68□□□□□ -0.86
CCDC40-207ENST00000572253 SLC6A7Q99884 636 aa9.68□□□□□ -0.86
CCDC40-207ENST00000572253 ZMAT3Q9HA38 289 aaKnown RBP9.68□□□□□ -0.86
CCDC40-207ENST00000572253 MYEF2Q9P2K5 600 aaKnown RBP9.68□□□□□ -0.86
CCDC40-207ENST00000572253 RAB22AQ9UL26 194 aa9.68□□□□□ -0.86
CCDC40-207ENST00000572253 LRP12Q9Y561 859 aa9.68□□□□□ -0.86
CCDC40-207ENST00000572253 R4GMQ9 66 aa9.68□□□□□ -0.86
CCDC40-207ENST00000572253 C2orf16Q68DN1 1984 aa9.68□□□□□ -0.86
CCDC40-207ENST00000572253 DNASE2O00115 360 aaPredicted RBP9.68□□□□□ -0.86
CCDC40-207ENST00000572253 GP1BAP07359 652 aa9.68□□□□□ -0.86
CCDC40-207ENST00000572253 LIPCP11150 499 aa9.68□□□□□ -0.86
CCDC40-207ENST00000572253 ICAM2P13598 275 aa9.68□□□□□ -0.86
CCDC40-207ENST00000572253 VAMP1P23763 118 aa9.68□□□□□ -0.86
CCDC40-207ENST00000572253 MST1P26927 711 aa9.68□□□□□ -0.86
CCDC40-207ENST00000572253 BLKP51451 505 aa9.68□□□□□ -0.86
CCDC40-207ENST00000572253 IL13RA1P78552 427 aa9.68□□□□□ -0.86
CCDC40-207ENST00000572253 SRSF4Q08170 494 aaKnown RBP9.68□□□□□ -0.86
CCDC40-207ENST00000572253 MFGE8Q08431 387 aaPredicted RBP9.68□□□□□ -0.86
CCDC40-207ENST00000572253 BEX5Q5H9J7 111 aa9.68□□□□□ -0.86
CCDC40-207ENST00000572253 PHF19Q5T6S3 580 aa9.68□□□□□ -0.86
CCDC40-207ENST00000572253 COL13A1Q5TAT6 717 aaPredicted RBP9.68□□□□□ -0.86
CCDC40-207ENST00000572253 C3orf33Q6P1S2 294 aa9.68□□□□□ -0.86
CCDC40-207ENST00000572253 ZDHHC22Q8N966 263 aa9.68□□□□□ -0.86
CCDC40-207ENST00000572253 NKX3-1Q99801 234 aaPredicted RBP9.68□□□□□ -0.86
CCDC40-207ENST00000572253 EDEM2Q9BV94 578 aa9.68□□□□□ -0.86
CCDC40-207ENST00000572253 NUDT9Q9BW91 350 aa9.68□□□□□ -0.86
CCDC40-207ENST00000572253 PRELID3BQ9Y3B1 194 aa9.68□□□□□ -0.86
CCDC40-207ENST00000572253 LOC100509620A0A075B734 347 aa9.67□□□□□ -0.86
CCDC40-207ENST00000572253 LOC107986453A0A1B0GWG9 222 aa9.67□□□□□ -0.86
CCDC40-207ENST00000572253 C5orf51A6NDU8 294 aa9.67□□□□□ -0.86
CCDC40-207ENST00000572253 ICOSLGO75144 302 aa9.67□□□□□ -0.86
CCDC40-207ENST00000572253 SCGNO76038 276 aa9.67□□□□□ -0.86
CCDC40-207ENST00000572253 RAB6AP20340 208 aa9.67□□□□□ -0.86
CCDC40-207ENST00000572253 ZNF117Q03924 483 aa9.67□□□□□ -0.86
CCDC40-207ENST00000572253 NR0B2Q15466 257 aa9.67□□□□□ -0.86
CCDC40-207ENST00000572253 TRAPPC6BQ86SZ2 158 aa9.67□□□□□ -0.86
CCDC40-207ENST00000572253 SLC25A42Q86VD7 318 aa9.67□□□□□ -0.86
CCDC40-207ENST00000572253 OR10Z1Q8NGY1 313 aa9.67□□□□□ -0.86
CCDC40-207ENST00000572253 CASTOR1Q8WTX7 329 aa9.67□□□□□ -0.86
CCDC40-207ENST00000572253 PPP1R14AQ96A00 147 aa9.67□□□□□ -0.86
CCDC40-207ENST00000572253 NPAS1Q99742 590 aa9.67□□□□□ -0.86
CCDC40-207ENST00000572253 MAP3K3Q99759 626 aa9.67□□□□□ -0.86
CCDC40-207ENST00000572253 ASF1BQ9NVP2 202 aa9.67□□□□□ -0.86
CCDC40-207ENST00000572253 HPF1Q9NWY4 346 aa9.67□□□□□ -0.86
CCDC40-207ENST00000572253 EMC9Q9Y3B6 208 aa9.67□□□□□ -0.86
CCDC40-207ENST00000572253 CELA2BP08218 269 aaPredicted RBP9.67□□□□□ -0.86
CCDC40-207ENST00000572253 CTHP32929 405 aa9.67□□□□□ -0.86
Retrieved 100 of 20,778 RNA–protein pairs in 50 ms