RNA–Protein interactions for RNA: ENST00000561818.1

VPS39-204, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 3

Gene VPS39, Length 537 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-204ENST00000561818 BPNT1O95861 308 aa6.69□□□□□ -1.34
VPS39-204ENST00000561818 SP1P08047 785 aa6.69□□□□□ -1.34
VPS39-204ENST00000561818 RAB6AP20340 208 aa6.69□□□□□ -1.34
VPS39-204ENST00000561818 SHC1P29353 583 aa6.69□□□□□ -1.34
VPS39-204ENST00000561818 CD79BP40259 229 aa6.69□□□□□ -1.34
VPS39-204ENST00000561818 BCAP31P51572 246 aa6.69□□□□□ -1.34
VPS39-204ENST00000561818 ART1P52961 327 aa6.69□□□□□ -1.34
VPS39-204ENST00000561818 GFRA1P56159 465 aa6.69□□□□□ -1.34
VPS39-204ENST00000561818 CLDN17P56750 224 aa6.69□□□□□ -1.34
VPS39-204ENST00000561818 RPS11P62280 158 aaKnown RBP eCLIP6.69□□□□□ -1.34
VPS39-204ENST00000561818 LCN6P62502 163 aa6.69□□□□□ -1.34
VPS39-204ENST00000561818 PLGLB1Q02325 96 aa6.69□□□□□ -1.34
VPS39-204ENST00000561818 RTP5Q14D33 572 aa6.69□□□□□ -1.34
VPS39-204ENST00000561818 EIF2S3LQ2VIR3 472 aaKnown RBP6.69□□□□□ -1.34
VPS39-204ENST00000561818 FAM27BQ5VT28 67 aa6.69□□□□□ -1.34
VPS39-204ENST00000561818 RTL6Q6ICC9 239 aa6.69□□□□□ -1.34
VPS39-204ENST00000561818 DOK3Q7L591 496 aa6.69□□□□□ -1.34
VPS39-204ENST00000561818 TMPRSS7Q7RTY8 843 aa6.69□□□□□ -1.34
VPS39-204ENST00000561818 MCEMP1Q8IX19 187 aa6.69□□□□□ -1.34
VPS39-204ENST00000561818 CCDC36Q8IYA8 594 aa6.69□□□□□ -1.34
VPS39-204ENST00000561818 C20orf196Q8IYI0 205 aa6.69□□□□□ -1.34
VPS39-204ENST00000561818 ELMOD2Q8IZ81 293 aa6.69□□□□□ -1.34
VPS39-204ENST00000561818 SAMD12Q8N8I0 201 aa6.69□□□□□ -1.34
VPS39-204ENST00000561818 PNLDC1Q8NA58 520 aaKnown RBP6.69□□□□□ -1.34
VPS39-204ENST00000561818 ZFP62Q8NB50 900 aaPredicted RBP6.69□□□□□ -1.34
VPS39-204ENST00000561818 ZPLD1Q8TCW7 415 aa6.69□□□□□ -1.34
VPS39-204ENST00000561818 PP6455Q8WZ26 134 aa6.69□□□□□ -1.34
VPS39-204ENST00000561818 C11orf40Q8WZ69 217 aa6.69□□□□□ -1.34
VPS39-204ENST00000561818 PSMF1Q92530 271 aa6.69□□□□□ -1.34
VPS39-204ENST00000561818 POM121Q96HA1 1249 aa6.69□□□□□ -1.34
VPS39-204ENST00000561818 MAP6Q96JE9 813 aa6.69□□□□□ -1.34
VPS39-204ENST00000561818 PDCD1LG2Q9BQ51 273 aa6.69□□□□□ -1.34
VPS39-204ENST00000561818 RNF167Q9H6Y7 350 aa6.69□□□□□ -1.34
VPS39-204ENST00000561818 PPP1R3EQ9H7J1 279 aa6.69□□□□□ -1.34
VPS39-204ENST00000561818 PROK2Q9HC23 129 aa6.69□□□□□ -1.34
VPS39-204ENST00000561818 TMEM138Q9NPI0 162 aa6.69□□□□□ -1.34
VPS39-204ENST00000561818 PCDHB16Q9NRJ7 776 aa6.69□□□□□ -1.34
VPS39-204ENST00000561818 RBFOX1Q9NWB1 397 aaKnown RBP6.69□□□□□ -1.34
VPS39-204ENST00000561818 MED29Q9NX70 200 aa6.69□□□□□ -1.34
VPS39-204ENST00000561818 ETAA1Q9NY74 926 aa6.69□□□□□ -1.34
VPS39-204ENST00000561818 GDF2Q9UK05 429 aaPredicted RBP6.69□□□□□ -1.34
VPS39-204ENST00000561818 OR52A1Q9UKL2 312 aa6.69□□□□□ -1.34
VPS39-204ENST00000561818 FBXL3Q9UKT7 428 aa6.69□□□□□ -1.34
VPS39-204ENST00000561818 ZNF175Q9Y473 711 aa6.69□□□□□ -1.34
VPS39-204ENST00000561818 TTC28Q96AY4 2481 aa6.69□□□□□ -1.34
VPS39-204ENST00000561818 ZNF318Q5VUA4 2279 aa6.68□□□□□ -1.34
VPS39-204ENST00000561818 LOC100289279A0A1B0GTE1 492 aa6.68□□□□□ -1.34
VPS39-204ENST00000561818 LOC101059948A0A1B0GTJ6 334 aa6.68□□□□□ -1.34
VPS39-204ENST00000561818 A0A1W2PNR3 127 aa6.68□□□□□ -1.34
VPS39-204ENST00000561818 LOC390937A0A1W2PQ73 354 aa6.68□□□□□ -1.34
VPS39-204ENST00000561818 FUOMA2VDF0 154 aa6.68□□□□□ -1.34
VPS39-204ENST00000561818 OR6C6A6NF89 314 aa6.68□□□□□ -1.34
VPS39-204ENST00000561818 GABARAPH6UMI1 98 aa6.68□□□□□ -1.34
VPS39-204ENST00000561818 SLC17A2O00624 439 aa6.68□□□□□ -1.34
VPS39-204ENST00000561818 HPGDSO60760 199 aa6.68□□□□□ -1.34
VPS39-204ENST00000561818 RPP14O95059 124 aaKnown RBP6.68□□□□□ -1.34
VPS39-204ENST00000561818 CNOT4O95628 575 aaKnown RBP6.68□□□□□ -1.34
VPS39-204ENST00000561818 HNRNPCP07910 306 aaKnown RBP eCLIP6.68□□□□□ -1.34
VPS39-204ENST00000561818 CST2P09228 141 aa6.68□□□□□ -1.34
VPS39-204ENST00000561818 QDPRP09417 244 aa6.68□□□□□ -1.34
VPS39-204ENST00000561818 COX5BP10606 129 aa6.68□□□□□ -1.34
VPS39-204ENST00000561818 ZNF20P17024 532 aa6.68□□□□□ -1.34
VPS39-204ENST00000561818 TGFBR1P36897 503 aa6.68□□□□□ -1.34
VPS39-204ENST00000561818 GNALP38405 381 aa6.68□□□□□ -1.34
VPS39-204ENST00000561818 MAP2K3P46734 347 aa6.68□□□□□ -1.34
VPS39-204ENST00000561818 B3GALT5-AS1P59052 145 aa6.68□□□□□ -1.34
VPS39-204ENST00000561818 ACTBP60709 375 aa6.68□□□□□ -1.34
VPS39-204ENST00000561818 RPS18P62269 152 aaKnown RBP6.68□□□□□ -1.34
VPS39-204ENST00000561818 ACTG1P63261 375 aa6.68□□□□□ -1.34
VPS39-204ENST00000561818 ARG2P78540 354 aa6.68□□□□□ -1.34
VPS39-204ENST00000561818 Q0VFX4 171 aa6.68□□□□□ -1.34
VPS39-204ENST00000561818 FOXO1Q12778 655 aa6.68□□□□□ -1.34
VPS39-204ENST00000561818 SLC10A1Q14973 349 aa6.68□□□□□ -1.34
VPS39-204ENST00000561818 RAB35Q15286 201 aa6.68□□□□□ -1.34
VPS39-204ENST00000561818 RAB11BQ15907 218 aa6.68□□□□□ -1.34
VPS39-204ENST00000561818 WDR38Q5JTN6 314 aa6.68□□□□□ -1.34
VPS39-204ENST00000561818 OR7E24Q6IFN5 339 aa6.68□□□□□ -1.34
VPS39-204ENST00000561818 DRAM2Q6UX65 266 aa6.68□□□□□ -1.34
VPS39-204ENST00000561818 UNQ6126/PRO20091Q6UXV3 157 aa6.68□□□□□ -1.34
VPS39-204ENST00000561818 NHLRC1Q6VVB1 395 aa6.68□□□□□ -1.34
VPS39-204ENST00000561818 RPTNQ6XPR3 784 aa6.68□□□□□ -1.34
VPS39-204ENST00000561818 STAC2Q6ZMT1 411 aa6.68□□□□□ -1.34
VPS39-204ENST00000561818 FCRLAQ7L513 359 aa6.68□□□□□ -1.34
VPS39-204ENST00000561818 LINGO2Q7L985 606 aa6.68□□□□□ -1.34
VPS39-204ENST00000561818 ZC3HAV1Q7Z2W4 902 aaKnown RBP6.68□□□□□ -1.34
VPS39-204ENST00000561818 TMEM123Q8N131 208 aa6.68□□□□□ -1.34
VPS39-204ENST00000561818 FTMTQ8N4E7 242 aa6.68□□□□□ -1.34
VPS39-204ENST00000561818 MDS2Q8NDY4 140 aa6.68□□□□□ -1.34
VPS39-204ENST00000561818 OR13C3Q8NGS6 347 aa6.68□□□□□ -1.34
VPS39-204ENST00000561818 NANOS1Q8WY41 292 aaKnown RBP6.68□□□□□ -1.34
VPS39-204ENST00000561818 ABTB1Q969K4 478 aaPredicted RBP6.68□□□□□ -1.34
VPS39-204ENST00000561818 CREB3L1Q96BA8 519 aa6.68□□□□□ -1.34
VPS39-204ENST00000561818 HAVCR1Q96D42 359 aa6.68□□□□□ -1.34
VPS39-204ENST00000561818 SCMH1Q96GD3 660 aa6.68□□□□□ -1.34
VPS39-204ENST00000561818 TXNDC15Q96J42 360 aa6.68□□□□□ -1.34
VPS39-204ENST00000561818 ADGRG7Q96K78 797 aa6.68□□□□□ -1.34
VPS39-204ENST00000561818 OR2M2Q96R28 347 aa6.68□□□□□ -1.34
VPS39-204ENST00000561818 DCLRE1CQ96SD1 692 aaKnown RBP6.68□□□□□ -1.34
VPS39-204ENST00000561818 MESP1Q9BRJ9 268 aa6.68□□□□□ -1.34
VPS39-204ENST00000561818 MIXL1Q9H2W2 232 aa6.68□□□□□ -1.34
Retrieved 100 of 20,778 RNA–protein pairs in 47.6 ms