RNA–Protein interactions for RNA: ENST00000557933.5

LDLR-205, Transcript of low density lipoprotein receptor, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene LDLR, Length 2,941 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-205ENST00000557933 ZBTB8AQ96BR9 441 aa11.1□□□□□ -0.63
LDLR-205ENST00000557933 NXF5Q9H1B4 397 aaKnown RBP11.1□□□□□ -0.63
LDLR-205ENST00000557933 BARX1Q9HBU1 254 aaPredicted RBP11.1□□□□□ -0.63
LDLR-205ENST00000557933 DHDHQ9UQ10 334 aa11.1□□□□□ -0.63
LDLR-205ENST00000557933 ZNF98A6NK75 572 aa11.1□□□□□ -0.63
LDLR-205ENST00000557933 H7C2Y5 167 aa11.1□□□□□ -0.63
LDLR-205ENST00000557933 SULT1B1O43704 296 aa11.1□□□□□ -0.63
LDLR-205ENST00000557933 ADAP1O75689 374 aa11.1□□□□□ -0.63
LDLR-205ENST00000557933 PMP2P02689 132 aa11.1□□□□□ -0.63
LDLR-205ENST00000557933 APODP05090 189 aa11.1□□□□□ -0.63
LDLR-205ENST00000557933 FCARP24071 287 aa11.1□□□□□ -0.63
LDLR-205ENST00000557933 PPIAP62937 165 aaKnown RBP11.1□□□□□ -0.63
LDLR-205ENST00000557933 ZP2Q05996 745 aa11.1□□□□□ -0.63
LDLR-205ENST00000557933 SLC9A3R2Q15599 337 aa11.1□□□□□ -0.63
LDLR-205ENST00000557933 ALG11Q2TAA5 492 aa11.1□□□□□ -0.63
LDLR-205ENST00000557933 CLEC9AQ6UXN8 241 aa11.1□□□□□ -0.63
LDLR-205ENST00000557933 NUBPLQ8TB37 319 aa11.1□□□□□ -0.63
LDLR-205ENST00000557933 THAP3Q8WTV1 239 aaPredicted RBP11.1□□□□□ -0.63
LDLR-205ENST00000557933 ZDHHC19Q8WVZ1 309 aaPredicted RBP11.1□□□□□ -0.63
LDLR-205ENST00000557933 SLC41A2Q96JW4 573 aa11.1□□□□□ -0.63
LDLR-205ENST00000557933 DGAT2Q96PD7 388 aa11.1□□□□□ -0.63
LDLR-205ENST00000557933 MYO7BQ6PIF6 2116 aa11.09□□□□□ -0.63
LDLR-205ENST00000557933 TRBV5-5A0A0J9YX44 114 aa11.09□□□□□ -0.63
LDLR-205ENST00000557933 P2RY10O00398 339 aa11.09□□□□□ -0.63
LDLR-205ENST00000557933 HOXB2P14652 356 aa11.09□□□□□ -0.63
LDLR-205ENST00000557933 MAPK3P27361 379 aaPredicted RBP11.09□□□□□ -0.63
LDLR-205ENST00000557933 RBM34P42696 430 aaKnown RBP11.09□□□□□ -0.63
LDLR-205ENST00000557933 OR1D4P47884 311 aa11.09□□□□□ -0.63
LDLR-205ENST00000557933 IL13RA1P78552 427 aa11.09□□□□□ -0.63
LDLR-205ENST00000557933 EIF2B5Q13144 721 aaKnown RBP11.09□□□□□ -0.63
LDLR-205ENST00000557933 SNTB1Q13884 538 aaKnown RBP11.09□□□□□ -0.63
LDLR-205ENST00000557933 TMEM225Q6GV28 225 aa11.09□□□□□ -0.63
LDLR-205ENST00000557933 TMPRSS9Q7Z410 1059 aa11.09□□□□□ -0.63
LDLR-205ENST00000557933 WDFY1Q8IWB7 410 aa11.09□□□□□ -0.63
LDLR-205ENST00000557933 ZNF417Q8TAU3 575 aa11.09□□□□□ -0.63
LDLR-205ENST00000557933 BAHD1Q8TBE0 780 aaPredicted RBP11.09□□□□□ -0.63
LDLR-205ENST00000557933 METTL21AQ8WXB1 218 aa11.09□□□□□ -0.63
LDLR-205ENST00000557933 SLC6A15Q9H2J7 730 aa11.09□□□□□ -0.63
LDLR-205ENST00000557933 LOC100289279A0A1B0GTE1 492 aa11.09□□□□□ -0.63
LDLR-205ENST00000557933 WIPF3A6NGB9 483 aa11.09□□□□□ -0.63
LDLR-205ENST00000557933 PRR19A6NJB7 356 aa11.09□□□□□ -0.63
LDLR-205ENST00000557933 ARPC3O15145 178 aa11.09□□□□□ -0.63
LDLR-205ENST00000557933 FOXS1O43638 330 aa11.09□□□□□ -0.63
LDLR-205ENST00000557933 ZNF205O95201 554 aa11.09□□□□□ -0.63
LDLR-205ENST00000557933 SLC35E2P0CK97 266 aa11.09□□□□□ -0.63
LDLR-205ENST00000557933 RD3LP0DJH9 198 aa11.09□□□□□ -0.63
LDLR-205ENST00000557933 RPA2P15927 270 aa11.09□□□□□ -0.63
LDLR-205ENST00000557933 RAB3AP20336 220 aa11.09□□□□□ -0.63
LDLR-205ENST00000557933 PVALBP20472 110 aaPredicted RBP11.09□□□□□ -0.63
LDLR-205ENST00000557933 CSRP1P21291 193 aaKnown RBP11.09□□□□□ -0.63
LDLR-205ENST00000557933 HTR2CP28335 458 aa11.09□□□□□ -0.63
LDLR-205ENST00000557933 CSF2RBP32927 897 aa11.09□□□□□ -0.63
LDLR-205ENST00000557933 HRH1P35367 487 aa11.09□□□□□ -0.63
LDLR-205ENST00000557933 ARRB1P49407 418 aaPredicted RBP11.09□□□□□ -0.63
LDLR-205ENST00000557933 PRKXP51817 358 aa11.09□□□□□ -0.63
LDLR-205ENST00000557933 GLT8D1Q68CQ7 371 aa11.09□□□□□ -0.63
LDLR-205ENST00000557933 TAF8Q7Z7C8 310 aa11.09□□□□□ -0.63
LDLR-205ENST00000557933 OR10Z1Q8NGY1 313 aa11.09□□□□□ -0.63
LDLR-205ENST00000557933 TSLPQ969D9 159 aa11.09□□□□□ -0.63
LDLR-205ENST00000557933 ELSPBP1Q96BH3 223 aa11.09□□□□□ -0.63
LDLR-205ENST00000557933 SLC22A18Q96BI1 424 aa11.09□□□□□ -0.63
LDLR-205ENST00000557933 USB1Q9BQ65 265 aaKnown RBP11.09□□□□□ -0.63
LDLR-205ENST00000557933 SOX7Q9BT81 388 aa11.09□□□□□ -0.63
LDLR-205ENST00000557933 SEMA6CQ9H3T2 930 aa11.09□□□□□ -0.63
LDLR-205ENST00000557933 ZNF576Q9H609 170 aa11.09□□□□□ -0.63
LDLR-205ENST00000557933 PTGES2Q9H7Z7 377 aa11.09□□□□□ -0.63
LDLR-205ENST00000557933 GMEB2Q9UKD1 530 aa11.09□□□□□ -0.63
LDLR-205ENST00000557933 SLC5A6Q9Y289 635 aa11.09□□□□□ -0.63
LDLR-205ENST00000557933 A0A1W2PP11 408 aa11.08□□□□□ -0.63
LDLR-205ENST00000557933 MSGN1A6NI15 193 aa11.08□□□□□ -0.63
LDLR-205ENST00000557933 SHISA8B8ZZ34 492 aa11.08□□□□□ -0.63
LDLR-205ENST00000557933 XKRYO14609 159 aa11.08□□□□□ -0.63
LDLR-205ENST00000557933 EIF4E2O60573 245 aaKnown RBP11.08□□□□□ -0.63
LDLR-205ENST00000557933 KLF8O95600 359 aaPredicted RBP11.08□□□□□ -0.63
LDLR-205ENST00000557933 GP1BAP07359 652 aa11.08□□□□□ -0.63
LDLR-205ENST00000557933 ERCC1P07992 297 aaPredicted RBP11.08□□□□□ -0.63
LDLR-205ENST00000557933 PRPS1P60891 318 aa11.08□□□□□ -0.63
LDLR-205ENST00000557933 RPS4XP62701 263 aaKnown RBP11.08□□□□□ -0.63
LDLR-205ENST00000557933 PMPCAQ10713 525 aa11.08□□□□□ -0.63
LDLR-205ENST00000557933 KIR2DS3Q14952 304 aa11.08□□□□□ -0.63
LDLR-205ENST00000557933 ACKR1Q16570 336 aa11.08□□□□□ -0.63
LDLR-205ENST00000557933 C11orf87Q6NUJ2 197 aa11.08□□□□□ -0.63
LDLR-205ENST00000557933 H3F3CQ6NXT2 135 aa11.08□□□□□ -0.63
LDLR-205ENST00000557933 GALNTL5Q7Z4T8 443 aa11.08□□□□□ -0.63
LDLR-205ENST00000557933 NAXDQ8IW45 347 aa11.08□□□□□ -0.63
LDLR-205ENST00000557933 OR13H1Q8NG92 308 aa11.08□□□□□ -0.63
LDLR-205ENST00000557933 DCUN1D4Q92564 292 aa11.08□□□□□ -0.63
LDLR-205ENST00000557933 DCBLD2Q96PD2 775 aa11.08□□□□□ -0.63
LDLR-205ENST00000557933 FOXQ1Q9C009 403 aa11.08□□□□□ -0.63
LDLR-205ENST00000557933 PRTFDC1Q9NRG1 225 aa11.08□□□□□ -0.63
LDLR-205ENST00000557933 TO15178 435 aa11.08□□□□□ -0.64
LDLR-205ENST00000557933 SRPX2O60687 465 aaPredicted RBP11.08□□□□□ -0.64
LDLR-205ENST00000557933 HTR3BO95264 441 aa11.08□□□□□ -0.64
LDLR-205ENST00000557933 LDOC1O95751 146 aaPredicted RBP11.08□□□□□ -0.64
LDLR-205ENST00000557933 SPP1P10451 314 aa11.08□□□□□ -0.64
LDLR-205ENST00000557933 MGMTP16455 207 aa11.08□□□□□ -0.64
LDLR-205ENST00000557933 ANOS1P23352 680 aa11.08□□□□□ -0.64
LDLR-205ENST00000557933 CASRP41180 1078 aa11.08□□□□□ -0.64
LDLR-205ENST00000557933 PTCRAQ6ISU1 281 aaPredicted RBP11.08□□□□□ -0.64
LDLR-205ENST00000557933 PAPD4Q6PIY7 484 aaKnown RBP11.08□□□□□ -0.64
Retrieved 100 of 20,778 RNA–protein pairs in 43 ms