RNA–Protein interactions for RNA: ENST00000557433.5

SHMT2-231, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 1 (best)

Gene SHMT2, Length 1,904 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-231ENST00000557433 FAM74A1Q5RGS3 127 aa14.63□□□□□ -0.07
SHMT2-231ENST00000557433 DEGS2Q6QHC5 323 aa14.63□□□□□ -0.07
SHMT2-231ENST00000557433 C5orf46Q6UWT4 87 aa14.63□□□□□ -0.07
SHMT2-231ENST00000557433 Q6ZSR6 202 aa14.63□□□□□ -0.07
SHMT2-231ENST00000557433 OR52N5Q8NH56 324 aa14.63□□□□□ -0.07
SHMT2-231ENST00000557433 TCTN2Q96GX1 697 aa14.63□□□□□ -0.07
SHMT2-231ENST00000557433 ZNF285Q96NJ3 590 aa14.63□□□□□ -0.07
SHMT2-231ENST00000557433 SLC6A7Q99884 636 aa14.63□□□□□ -0.07
SHMT2-231ENST00000557433 WDR13Q9H1Z4 485 aa14.63□□□□□ -0.07
SHMT2-231ENST00000557433 KCNK15Q9H427 330 aa14.63□□□□□ -0.07
SHMT2-231ENST00000557433 KLK13Q9UKR3 277 aa14.63□□□□□ -0.07
SHMT2-231ENST00000557433 A0A1W2PQD3 144 aa14.62□□□□□ -0.07
SHMT2-231ENST00000557433 TMEM218A2RU14 115 aa14.62□□□□□ -0.07
SHMT2-231ENST00000557433 C9orf170A2RU37 121 aa14.62□□□□□ -0.07
SHMT2-231ENST00000557433 ALOX12BO75342 701 aa14.62□□□□□ -0.07
SHMT2-231ENST00000557433 SLC25A12O75746 678 aa14.62□□□□□ -0.07
SHMT2-231ENST00000557433 KLF8O95600 359 aaPredicted RBP14.62□□□□□ -0.07
SHMT2-231ENST00000557433 FCER2P06734 321 aa14.62□□□□□ -0.07
SHMT2-231ENST00000557433 MAOAP21397 527 aa14.62□□□□□ -0.07
SHMT2-231ENST00000557433 RPS27P42677 84 aaKnown RBP14.62□□□□□ -0.07
SHMT2-231ENST00000557433 DCAF7P61962 342 aa14.62□□□□□ -0.07
SHMT2-231ENST00000557433 SCGB2B2Q4G0G5 96 aa14.62□□□□□ -0.07
SHMT2-231ENST00000557433 TMEM244Q5VVB8 128 aa14.62□□□□□ -0.07
SHMT2-231ENST00000557433 ZNF813Q6ZN06 617 aa14.62□□□□□ -0.07
SHMT2-231ENST00000557433 DTWD2Q8NBA8 298 aa14.62□□□□□ -0.07
SHMT2-231ENST00000557433 TSNAXQ99598 290 aaKnown RBP14.62□□□□□ -0.07
SHMT2-231ENST00000557433 CMKLR1Q99788 373 aa14.62□□□□□ -0.07
SHMT2-231ENST00000557433 MRPL22Q9NWU5 206 aaKnown RBP14.62□□□□□ -0.07
SHMT2-231ENST00000557433 GTF2A1LQ9UNN4 478 aa14.62□□□□□ -0.07
SHMT2-231ENST00000557433 MRPS18BQ9Y676 258 aaKnown RBP14.62□□□□□ -0.07
SHMT2-231ENST00000557433 FANCMQ8IYD8 2048 aa14.62□□□□□ -0.07
SHMT2-231ENST00000557433 CPED1A4D0V7 1026 aa14.62□□□□□ -0.07
SHMT2-231ENST00000557433 FAM74A7A6NL05 159 aa14.62□□□□□ -0.07
SHMT2-231ENST00000557433 OR2AT4A6NND4 320 aa14.62□□□□□ -0.07
SHMT2-231ENST00000557433 C17orf105B2RV13 164 aa14.62□□□□□ -0.07
SHMT2-231ENST00000557433 F5H0A9 414 aaPredicted RBP14.62□□□□□ -0.07
SHMT2-231ENST00000557433 F8VVB4 439 aa14.62□□□□□ -0.07
SHMT2-231ENST00000557433 F8VWA3 439 aa14.62□□□□□ -0.07
SHMT2-231ENST00000557433 H0YIG0 161 aa14.62□□□□□ -0.07
SHMT2-231ENST00000557433 SLC16A7O60669 478 aa14.62□□□□□ -0.07
SHMT2-231ENST00000557433 SRSF10O75494 262 aaKnown RBP14.62□□□□□ -0.07
SHMT2-231ENST00000557433 DXOO77932 396 aaKnown RBP14.62□□□□□ -0.07
SHMT2-231ENST00000557433 TPT1P13693 172 aaKnown RBP14.62□□□□□ -0.07
SHMT2-231ENST00000557433 PGCP20142 388 aa14.62□□□□□ -0.07
SHMT2-231ENST00000557433 HOXA1P49639 335 aaPredicted RBP14.62□□□□□ -0.07
SHMT2-231ENST00000557433 SLC37A1P57057 533 aa14.62□□□□□ -0.07
SHMT2-231ENST00000557433 PPP1CAP62136 330 aa14.62□□□□□ -0.07
SHMT2-231ENST00000557433 CXADRP78310 365 aa14.62□□□□□ -0.07
SHMT2-231ENST00000557433 CTAG1AP78358 180 aa14.62□□□□□ -0.07
SHMT2-231ENST00000557433 HHEXQ03014 270 aa14.62□□□□□ -0.07
SHMT2-231ENST00000557433 GLO1Q04760 184 aa14.62□□□□□ -0.07
SHMT2-231ENST00000557433 EIF2B1Q14232 305 aaKnown RBP14.62□□□□□ -0.07
SHMT2-231ENST00000557433 KCNAB1Q14722 419 aa14.62□□□□□ -0.07
SHMT2-231ENST00000557433 TOMM34Q15785 309 aaPredicted RBP14.62□□□□□ -0.07
SHMT2-231ENST00000557433 ACKR1Q16570 336 aa14.62□□□□□ -0.07
SHMT2-231ENST00000557433 FAM74A3Q4VXF1 159 aa14.62□□□□□ -0.07
SHMT2-231ENST00000557433 SLC35D2Q76EJ3 337 aa14.62□□□□□ -0.07
SHMT2-231ENST00000557433 OR13C3Q8NGS6 347 aa14.62□□□□□ -0.07
SHMT2-231ENST00000557433 FAM46BQ96A09 425 aa14.62□□□□□ -0.07
SHMT2-231ENST00000557433 ABHD6Q9BV23 337 aa14.62□□□□□ -0.07
SHMT2-231ENST00000557433 SLC39A1Q9NY26 324 aa14.62□□□□□ -0.07
SHMT2-231ENST00000557433 MKL2Q9ULH7 1088 aa14.62□□□□□ -0.07
SHMT2-231ENST00000557433 VSIG4Q9Y279 399 aa14.62□□□□□ -0.07
SHMT2-231ENST00000557433 MMACHCQ9Y4U1 282 aa14.62□□□□□ -0.07
SHMT2-231ENST00000557433 LRP12Q9Y561 859 aa14.62□□□□□ -0.07
SHMT2-231ENST00000557433 LRP4O75096 1905 aa14.61□□□□□ -0.07
SHMT2-231ENST00000557433 TRBV6-7A0A0A0MS04 114 aa14.61□□□□□ -0.07
SHMT2-231ENST00000557433 DUS4LO95620 317 aaKnown RBP14.61□□□□□ -0.07
SHMT2-231ENST00000557433 MAOBP27338 520 aa14.61□□□□□ -0.07
SHMT2-231ENST00000557433 MFGE8Q08431 387 aaPredicted RBP14.61□□□□□ -0.07
SHMT2-231ENST00000557433 ZNF260Q3ZCT1 412 aa14.61□□□□□ -0.07
SHMT2-231ENST00000557433 C10orf91Q5T1B1 145 aa14.61□□□□□ -0.07
SHMT2-231ENST00000557433 DNM1P34Q6PK57 102 aa14.61□□□□□ -0.07
SHMT2-231ENST00000557433 LYPD6Q86Y78 171 aa14.61□□□□□ -0.07
SHMT2-231ENST00000557433 AVL9Q8NBF6 648 aa14.61□□□□□ -0.07
SHMT2-231ENST00000557433 BADQ92934 168 aa14.61□□□□□ -0.07
SHMT2-231ENST00000557433 NARS2Q96I59 477 aaKnown RBP14.61□□□□□ -0.07
SHMT2-231ENST00000557433 ZNF75AQ96N20 296 aa14.61□□□□□ -0.07
SHMT2-231ENST00000557433 GDF2Q9UK05 429 aaPredicted RBP14.61□□□□□ -0.07
SHMT2-231ENST00000557433 PCDHB10Q9UN67 800 aa14.61□□□□□ -0.07
SHMT2-231ENST00000557433 FARSAQ9Y285 508 aaKnown RBP14.61□□□□□ -0.07
SHMT2-231ENST00000557433 CARHSP1Q9Y2V2 147 aaKnown RBP14.61□□□□□ -0.07
SHMT2-231ENST00000557433 GPANK1O95872 356 aa14.6□□□□□ -0.07
SHMT2-231ENST00000557433 GP1BBP13224 206 aa14.6□□□□□ -0.07
SHMT2-231ENST00000557433 ZNF28P17035 718 aa14.6□□□□□ -0.07
SHMT2-231ENST00000557433 HSD11B1P28845 292 aa14.6□□□□□ -0.07
SHMT2-231ENST00000557433 CX3CR1P49238 355 aa14.6□□□□□ -0.07
SHMT2-231ENST00000557433 VEGFBP49765 207 aa14.6□□□□□ -0.07
SHMT2-231ENST00000557433 ATP1B3P54709 279 aa14.6□□□□□ -0.07
SHMT2-231ENST00000557433 IL13RA1P78552 427 aa14.6□□□□□ -0.07
SHMT2-231ENST00000557433 INSM1Q01101 510 aaPredicted RBP14.6□□□□□ -0.07
SHMT2-231ENST00000557433 ERV3-1Q14264 604 aa14.6□□□□□ -0.07
SHMT2-231ENST00000557433 CDNFQ49AH0 187 aa14.6□□□□□ -0.07
SHMT2-231ENST00000557433 SPAG16Q8N0X2 631 aa14.6□□□□□ -0.07
SHMT2-231ENST00000557433 JAGN1Q8N5M9 183 aa14.6□□□□□ -0.07
SHMT2-231ENST00000557433 ARL11Q969Q4 196 aa14.6□□□□□ -0.07
SHMT2-231ENST00000557433 MRGPRX1Q96LB2 322 aa14.6□□□□□ -0.07
SHMT2-231ENST00000557433 CDCA3Q99618 268 aaPredicted RBP14.6□□□□□ -0.07
SHMT2-231ENST00000557433 NXF5Q9H1B4 397 aaKnown RBP14.6□□□□□ -0.07
SHMT2-231ENST00000557433 MTIF3Q9H2K0 278 aaKnown RBP14.6□□□□□ -0.07
Retrieved 100 of 20,778 RNA–protein pairs in 40 ms