RNA–Protein interactions for RNA: ENST00000555774.5

SHMT2-222, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 1 (best)

Gene SHMT2, Length 2,311 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-222ENST00000555774 TMEM82A0PJX8 343 aa12.09□□□□□ -0.47
SHMT2-222ENST00000555774 SOX1O00570 391 aaPredicted RBP12.09□□□□□ -0.47
SHMT2-222ENST00000555774 ARPC5O15511 151 aa12.09□□□□□ -0.47
SHMT2-222ENST00000555774 ZNF208O43345 1280 aa12.09□□□□□ -0.47
SHMT2-222ENST00000555774 RAD1O60671 282 aa12.09□□□□□ -0.47
SHMT2-222ENST00000555774 PIAS2O75928 621 aa12.09□□□□□ -0.47
SHMT2-222ENST00000555774 FOLR1P15328 257 aa12.09□□□□□ -0.47
SHMT2-222ENST00000555774 ZNF250P15622 560 aa12.09□□□□□ -0.47
SHMT2-222ENST00000555774 RPA2P15927 270 aa12.09□□□□□ -0.47
SHMT2-222ENST00000555774 GPR85P60893 370 aa12.09□□□□□ -0.47
SHMT2-222ENST00000555774 RNF4P78317 190 aa12.09□□□□□ -0.47
SHMT2-222ENST00000555774 PRAMEF17Q5VTA0 474 aa12.09□□□□□ -0.47
SHMT2-222ENST00000555774 RAB12Q6IQ22 244 aa12.09□□□□□ -0.47
SHMT2-222ENST00000555774 LPCAT3Q6P1A2 487 aa12.09□□□□□ -0.47
SHMT2-222ENST00000555774 H1FNTQ75WM6 255 aaPredicted RBP12.09□□□□□ -0.47
SHMT2-222ENST00000555774 ZNF627Q7L945 461 aa12.09□□□□□ -0.47
SHMT2-222ENST00000555774 ST7LQ8TDW4 575 aa12.09□□□□□ -0.47
SHMT2-222ENST00000555774 WBP1Q96G27 269 aa12.09□□□□□ -0.47
SHMT2-222ENST00000555774 KCNK17Q96T54 332 aa12.09□□□□□ -0.47
SHMT2-222ENST00000555774 TGIF2Q9GZN2 237 aa12.09□□□□□ -0.47
SHMT2-222ENST00000555774 POFUT1Q9H488 388 aa12.09□□□□□ -0.47
SHMT2-222ENST00000555774 EMC9Q9Y3B6 208 aa12.09□□□□□ -0.47
SHMT2-222ENST00000555774 SESN1Q9Y6P5 492 aa12.09□□□□□ -0.47
SHMT2-222ENST00000555774 TDRD6O60522 2096 aaKnown RBP12.08□□□□□ -0.48
SHMT2-222ENST00000555774 TNFSF12-TNFSF13A0A0A6YY99 330 aa12.08□□□□□ -0.48
SHMT2-222ENST00000555774 MFSD2BA6NFX1 497 aa12.08□□□□□ -0.48
SHMT2-222ENST00000555774 MS4A18H0YCH9 400 aa12.08□□□□□ -0.48
SHMT2-222ENST00000555774 ACSM4P0C7M7 580 aa12.08□□□□□ -0.48
SHMT2-222ENST00000555774 NAGAP17050 411 aa12.08□□□□□ -0.48
SHMT2-222ENST00000555774 ZP3P21754 424 aa12.08□□□□□ -0.48
SHMT2-222ENST00000555774 C17orf67Q0P5P2 114 aa12.08□□□□□ -0.48
SHMT2-222ENST00000555774 PMPCAQ10713 525 aa12.08□□□□□ -0.48
SHMT2-222ENST00000555774 GK2Q14410 553 aaPredicted RBP12.08□□□□□ -0.48
SHMT2-222ENST00000555774 MEF2DQ14814 521 aa12.08□□□□□ -0.48
SHMT2-222ENST00000555774 ZMYND11Q15326 602 aa12.08□□□□□ -0.48
SHMT2-222ENST00000555774 C2orf68Q2NKX9 166 aa12.08□□□□□ -0.48
SHMT2-222ENST00000555774 MS4A18Q3C1V0 323 aa12.08□□□□□ -0.48
SHMT2-222ENST00000555774 CLVS2Q5SYC1 327 aa12.08□□□□□ -0.48
SHMT2-222ENST00000555774 OTPQ5XKR4 325 aa12.08□□□□□ -0.48
SHMT2-222ENST00000555774 LYPD6Q86Y78 171 aa12.08□□□□□ -0.48
SHMT2-222ENST00000555774 C12orf45Q8N5I9 185 aaPredicted RBP12.08□□□□□ -0.48
SHMT2-222ENST00000555774 OR8S1Q8NH09 359 aa12.08□□□□□ -0.48
SHMT2-222ENST00000555774 EDEM2Q9BV94 578 aa12.08□□□□□ -0.48
SHMT2-222ENST00000555774 FANCFQ9NPI8 374 aa12.08□□□□□ -0.48
SHMT2-222ENST00000555774 PISDQ9UG56 409 aa12.08□□□□□ -0.48
SHMT2-222ENST00000555774 MRPS18BQ9Y676 258 aaKnown RBP12.08□□□□□ -0.48
SHMT2-222ENST00000555774 FXYD6-FXYD2A0A087WZ82 144 aa12.08□□□□□ -0.48
SHMT2-222ENST00000555774 MEIS3P1A6NDR6 274 aa12.08□□□□□ -0.48
SHMT2-222ENST00000555774 RFPL4AA6NLU0 287 aa12.08□□□□□ -0.48
SHMT2-222ENST00000555774 RFPL4AL1F8VTS6 287 aa12.08□□□□□ -0.48
SHMT2-222ENST00000555774 SDC3O75056 442 aa12.08□□□□□ -0.48
SHMT2-222ENST00000555774 SCGNO76038 276 aa12.08□□□□□ -0.48
SHMT2-222ENST00000555774 SIX6O95475 246 aa12.08□□□□□ -0.48
SHMT2-222ENST00000555774 CYB5AP00167 134 aa12.08□□□□□ -0.48
SHMT2-222ENST00000555774 OR4E1P0C645 316 aa12.08□□□□□ -0.48
SHMT2-222ENST00000555774 MPZP25189 248 aa12.08□□□□□ -0.48
SHMT2-222ENST00000555774 MMP16P51512 607 aa12.08□□□□□ -0.48
SHMT2-222ENST00000555774 CFHR1Q03591 330 aa12.08□□□□□ -0.48
SHMT2-222ENST00000555774 RGS7BPQ6MZT1 257 aaPredicted RBP12.08□□□□□ -0.48
SHMT2-222ENST00000555774 TMEM65Q6PI78 240 aa12.08□□□□□ -0.48
SHMT2-222ENST00000555774 C11orf88Q6PI97 169 aa12.08□□□□□ -0.48
SHMT2-222ENST00000555774 GSG1LQ6UXU4 331 aa12.08□□□□□ -0.48
SHMT2-222ENST00000555774 DCXRQ7Z4W1 244 aa12.08□□□□□ -0.48
SHMT2-222ENST00000555774 MDGA2Q7Z553 956 aa12.08□□□□□ -0.48
SHMT2-222ENST00000555774 PRSS58Q8IYP2 241 aa12.08□□□□□ -0.48
SHMT2-222ENST00000555774 PCNPQ8WW12 178 aaKnown RBP12.08□□□□□ -0.48
SHMT2-222ENST00000555774 DVL3Q92997 716 aaPredicted RBP12.08□□□□□ -0.48
SHMT2-222ENST00000555774 ZNF501Q96CX3 271 aaPredicted RBP12.08□□□□□ -0.48
SHMT2-222ENST00000555774 DDIT4LQ96D03 193 aa12.08□□□□□ -0.48
SHMT2-222ENST00000555774 WDR89Q96FK6 387 aaPredicted RBP12.08□□□□□ -0.48
SHMT2-222ENST00000555774 REG4Q9BYZ8 158 aa12.08□□□□□ -0.48
SHMT2-222ENST00000555774 ARL6Q9H0F7 186 aa12.08□□□□□ -0.48
SHMT2-222ENST00000555774 FXYD6Q9H0Q3 95 aa12.08□□□□□ -0.48
SHMT2-222ENST00000555774 CHST11Q9NPF2 352 aa12.08□□□□□ -0.48
SHMT2-222ENST00000555774 SLC2A8Q9NY64 477 aa12.08□□□□□ -0.48
SHMT2-222ENST00000555774 CGGBP1Q9UFW8 167 aaPredicted RBP12.08□□□□□ -0.48
SHMT2-222ENST00000555774 SRPK3Q9UPE1 567 aa12.08□□□□□ -0.48
SHMT2-222ENST00000555774 TMEM269A0A1B0GVZ9 245 aa12.07□□□□□ -0.48
SHMT2-222ENST00000555774 METTL21EPA6NDL7 271 aa12.07□□□□□ -0.48
SHMT2-222ENST00000555774 ZNF736B4DX44 427 aaPredicted RBP12.07□□□□□ -0.48
SHMT2-222ENST00000555774 NMBP08949 121 aa12.07□□□□□ -0.48
SHMT2-222ENST00000555774 HLA-DOBP13765 273 aa12.07□□□□□ -0.48
SHMT2-222ENST00000555774 GLB1P16278 677 aa12.07□□□□□ -0.48
SHMT2-222ENST00000555774 AGTR1P30556 359 aa12.07□□□□□ -0.48
SHMT2-222ENST00000555774 SRSF4Q08170 494 aaKnown RBP12.07□□□□□ -0.48
SHMT2-222ENST00000555774 FGL1Q08830 312 aa12.07□□□□□ -0.48
SHMT2-222ENST00000555774 C1orf189Q5VU69 101 aa12.07□□□□□ -0.48
SHMT2-222ENST00000555774 JAGN1Q8N5M9 183 aa12.07□□□□□ -0.48
SHMT2-222ENST00000555774 OR6K3Q8NGY3 331 aa12.07□□□□□ -0.48
SHMT2-222ENST00000555774 NUBPLQ8TB37 319 aa12.07□□□□□ -0.48
SHMT2-222ENST00000555774 RNF133Q8WVZ7 376 aa12.07□□□□□ -0.48
SHMT2-222ENST00000555774 CMKLR1Q99788 373 aa12.07□□□□□ -0.48
SHMT2-222ENST00000555774 SDHAF2Q9NX18 166 aa12.07□□□□□ -0.48
SHMT2-222ENST00000555774 RAB22AQ9UL26 194 aa12.07□□□□□ -0.48
SHMT2-222ENST00000555774 RHBDD3Q9Y3P4 386 aa12.07□□□□□ -0.48
SHMT2-222ENST00000555774 SPEF1Q9Y4P9 236 aa12.07□□□□□ -0.48
SHMT2-222ENST00000555774 DISC1C4P0D8 188 aa12.06□□□□□ -0.48
SHMT2-222ENST00000555774 ETV2O00321 342 aaPredicted RBP12.06□□□□□ -0.48
SHMT2-222ENST00000555774 MPZL1O95297 269 aa12.06□□□□□ -0.48
SHMT2-222ENST00000555774 AMY2AP04746 511 aa12.06□□□□□ -0.48
Retrieved 100 of 20,778 RNA–protein pairs in 30 ms