RNA–Protein interactions for RNA: ENST00000553837.5

SHMT2-207, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 5

Gene SHMT2, Length 2,152 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-207ENST00000553837 CNTNAP3BQ96NU0 1288 aa11.05□□□□□ -0.64
SHMT2-207ENST00000553837 G6PC3Q9BUM1 346 aa11.05□□□□□ -0.64
SHMT2-207ENST00000553837 SLC25A18Q9H1K4 315 aa11.05□□□□□ -0.64
SHMT2-207ENST00000553837 WDR13Q9H1Z4 485 aa11.05□□□□□ -0.64
SHMT2-207ENST00000553837 PRO3102Q9H379 93 aa11.05□□□□□ -0.64
SHMT2-207ENST00000553837 EXO5Q9H790 373 aa11.05□□□□□ -0.64
SHMT2-207ENST00000553837 MKKSQ9NPJ1 570 aaPredicted RBP11.05□□□□□ -0.64
SHMT2-207ENST00000553837 ASF1BQ9NVP2 202 aa11.05□□□□□ -0.64
SHMT2-207ENST00000553837 UPB1Q9UBR1 384 aa11.05□□□□□ -0.64
SHMT2-207ENST00000553837 MPDZO75970 2070 aa11.05□□□□□ -0.64
SHMT2-207ENST00000553837 CACNA1IQ9P0X4 2223 aa11.04□□□□□ -0.64
SHMT2-207ENST00000553837 C5orf52A6NGY3 159 aa11.04□□□□□ -0.64
SHMT2-207ENST00000553837 RHPN2P1A8MT19 583 aa11.04□□□□□ -0.64
SHMT2-207ENST00000553837 IDSB3KWA1 339 aa11.04□□□□□ -0.64
SHMT2-207ENST00000553837 CLDN4O14493 209 aa11.04□□□□□ -0.64
SHMT2-207ENST00000553837 AKR7A3O95154 331 aa11.04□□□□□ -0.64
SHMT2-207ENST00000553837 IFNGP01579 166 aa11.04□□□□□ -0.64
SHMT2-207ENST00000553837 AKAIN1P0CW23 69 aa11.04□□□□□ -0.64
SHMT2-207ENST00000553837 NME1P15531 152 aaKnown RBP11.04□□□□□ -0.64
SHMT2-207ENST00000553837 VAMP1P23763 118 aa11.04□□□□□ -0.64
SHMT2-207ENST00000553837 ITPKBP27987 946 aa11.04□□□□□ -0.64
SHMT2-207ENST00000553837 CD1CP29017 333 aa11.04□□□□□ -0.64
SHMT2-207ENST00000553837 AKR1C2P52895 323 aa11.04□□□□□ -0.64
SHMT2-207ENST00000553837 AKR1C1Q04828 323 aa11.04□□□□□ -0.64
SHMT2-207ENST00000553837 DEFB133Q30KQ1 61 aa11.04□□□□□ -0.64
SHMT2-207ENST00000553837 LBHQ53QV2 105 aaPredicted RBP11.04□□□□□ -0.64
SHMT2-207ENST00000553837 OR2B11Q5JQS5 317 aa11.04□□□□□ -0.64
SHMT2-207ENST00000553837 MED25Q71SY5 747 aa11.04□□□□□ -0.64
SHMT2-207ENST00000553837 STK35Q8TDR2 534 aa11.04□□□□□ -0.64
SHMT2-207ENST00000553837 DUSP19Q8WTR2 217 aa11.04□□□□□ -0.64
SHMT2-207ENST00000553837 ZNF75AQ96N20 296 aa11.04□□□□□ -0.64
SHMT2-207ENST00000553837 PDCD1LG2Q9BQ51 273 aa11.04□□□□□ -0.64
SHMT2-207ENST00000553837 RTN4RQ9BZR6 473 aa11.04□□□□□ -0.64
SHMT2-207ENST00000553837 SLITRK2Q9H156 845 aa11.04□□□□□ -0.64
SHMT2-207ENST00000553837 C1orf198Q9H425 327 aa11.04□□□□□ -0.64
SHMT2-207ENST00000553837 LANCL2Q9NS86 450 aa11.04□□□□□ -0.64
SHMT2-207ENST00000553837 SOHLH2Q9NX45 425 aa11.04□□□□□ -0.64
SHMT2-207ENST00000553837 COMMD9Q9P000 198 aa11.04□□□□□ -0.64
SHMT2-207ENST00000553837 GNG8Q9UK08 70 aa11.04□□□□□ -0.64
SHMT2-207ENST00000553837 FAM171A2A8MVW0 826 aa11.04□□□□□ -0.64
SHMT2-207ENST00000553837 C17orf105B2RV13 164 aa11.04□□□□□ -0.64
SHMT2-207ENST00000553837 TO15178 435 aa11.04□□□□□ -0.64
SHMT2-207ENST00000553837 XRCC3O43542 346 aa11.04□□□□□ -0.64
SHMT2-207ENST00000553837 RPL4P36578 427 aaKnown RBP11.04□□□□□ -0.64
SHMT2-207ENST00000553837 PSMB10P40306 273 aa11.04□□□□□ -0.64
SHMT2-207ENST00000553837 ADH7P40394 386 aa11.04□□□□□ -0.64
SHMT2-207ENST00000553837 RPS15P62841 145 aaKnown RBP11.04□□□□□ -0.64
SHMT2-207ENST00000553837 GGTLC2Q14390 218 aa11.04□□□□□ -0.64
SHMT2-207ENST00000553837 SMCO1Q147U7 214 aa11.04□□□□□ -0.64
SHMT2-207ENST00000553837 CPEB4Q17RY0 729 aaKnown RBP eCLIP11.04□□□□□ -0.64
SHMT2-207ENST00000553837 C11orf87Q6NUJ2 197 aa11.04□□□□□ -0.64
SHMT2-207ENST00000553837 ZNF813Q6ZN06 617 aa11.04□□□□□ -0.64
SHMT2-207ENST00000553837 ACOT7LQ6ZUV0 252 aa11.04□□□□□ -0.64
SHMT2-207ENST00000553837 SLC35F2Q8IXU6 374 aa11.04□□□□□ -0.64
SHMT2-207ENST00000553837 POMGNT2Q8NAT1 580 aa11.04□□□□□ -0.64
SHMT2-207ENST00000553837 TSTD1Q8NFU3 115 aa11.04□□□□□ -0.64
SHMT2-207ENST00000553837 OR51S1Q8NGJ8 323 aa11.04□□□□□ -0.64
SHMT2-207ENST00000553837 TSLPQ969D9 159 aa11.04□□□□□ -0.64
SHMT2-207ENST00000553837 CNN2Q99439 309 aaKnown RBP11.04□□□□□ -0.64
SHMT2-207ENST00000553837 SEC11CQ9BY50 192 aa11.04□□□□□ -0.64
SHMT2-207ENST00000553837 NMNAT2Q9BZQ4 307 aa11.04□□□□□ -0.64
SHMT2-207ENST00000553837 TLNRD1Q9H1K6 362 aa11.04□□□□□ -0.64
SHMT2-207ENST00000553837 ZNF281Q9Y2X9 895 aa11.04□□□□□ -0.64
SHMT2-207ENST00000553837 FGF16O43320 207 aa11.03□□□□□ -0.64
SHMT2-207ENST00000553837 WISP1O95388 367 aa11.03□□□□□ -0.64
SHMT2-207ENST00000553837 OR1D4P47884 311 aa11.03□□□□□ -0.64
SHMT2-207ENST00000553837 PPM1FP49593 454 aaPredicted RBP11.03□□□□□ -0.64
SHMT2-207ENST00000553837 DIO1P49895 249 aa11.03□□□□□ -0.64
SHMT2-207ENST00000553837 RPS4XP62701 263 aaKnown RBP11.03□□□□□ -0.64
SHMT2-207ENST00000553837 LTBQ06643 244 aa11.03□□□□□ -0.64
SHMT2-207ENST00000553837 SRSF4Q08170 494 aaKnown RBP11.03□□□□□ -0.64
SHMT2-207ENST00000553837 ELOCQ15369 112 aa11.03□□□□□ -0.64
SHMT2-207ENST00000553837 TAF13Q15543 124 aa11.03□□□□□ -0.64
SHMT2-207ENST00000553837 LY6G6FQ5SQ64 297 aa11.03□□□□□ -0.64
SHMT2-207ENST00000553837 TMEM71Q6P5X7 295 aa11.03□□□□□ -0.64
SHMT2-207ENST00000553837 DPY19L2P2Q6ZN68 376 aa11.03□□□□□ -0.64
SHMT2-207ENST00000553837 MAMDC2Q7Z304 686 aaPredicted RBP11.03□□□□□ -0.64
SHMT2-207ENST00000553837 C17orf82Q86X59 251 aaPredicted RBP11.03□□□□□ -0.64
SHMT2-207ENST00000553837 DND1Q8IYX4 353 aaKnown RBP11.03□□□□□ -0.64
SHMT2-207ENST00000553837 ARL11Q969Q4 196 aa11.03□□□□□ -0.64
SHMT2-207ENST00000553837 RNF166Q96A37 237 aaPredicted RBP11.03□□□□□ -0.64
SHMT2-207ENST00000553837 TSSK2Q96PF2 358 aa11.03□□□□□ -0.64
SHMT2-207ENST00000553837 NXF5Q9H1B4 397 aaKnown RBP11.03□□□□□ -0.64
SHMT2-207ENST00000553837 LMAN1LQ9HAT1 526 aa11.03□□□□□ -0.64
SHMT2-207ENST00000553837 NCDNQ9UBB6 729 aa11.03□□□□□ -0.64
SHMT2-207ENST00000553837 LILRA5A6NI73 299 aa11.03□□□□□ -0.64
SHMT2-207ENST00000553837 H3BMH7 237 aa11.03□□□□□ -0.64
SHMT2-207ENST00000553837 STMND1H3BQB6 276 aa11.03□□□□□ -0.64
SHMT2-207ENST00000553837 PSMD9O00233 223 aa11.03□□□□□ -0.64
SHMT2-207ENST00000553837 GTF2F2P13984 249 aa11.03□□□□□ -0.64
SHMT2-207ENST00000553837 ABOP16442 354 aa11.03□□□□□ -0.64
SHMT2-207ENST00000553837 LAP3P28838 519 aa11.03□□□□□ -0.64
SHMT2-207ENST00000553837 CD38P28907 300 aa11.03□□□□□ -0.64
SHMT2-207ENST00000553837 GRPRP30550 384 aa11.03□□□□□ -0.64
SHMT2-207ENST00000553837 AQP2P41181 271 aa11.03□□□□□ -0.64
SHMT2-207ENST00000553837 CDKN2AP42771 156 aaKnown RBP11.03□□□□□ -0.64
SHMT2-207ENST00000553837 MAGEB1P43366 347 aa11.03□□□□□ -0.64
SHMT2-207ENST00000553837 NPBWR1P48145 328 aa11.03□□□□□ -0.64
SHMT2-207ENST00000553837 SLC37A1P57057 533 aa11.03□□□□□ -0.64
SHMT2-207ENST00000553837 ACY1Q03154 408 aa11.03□□□□□ -0.64
Retrieved 100 of 20,778 RNA–protein pairs in 27.3 ms