RNA–Protein interactions for RNA: ENST00000547672.5

PTCH1-215, Transcript of patched 1, humanhuman

TSL 1 (best)

Gene PTCH1, Length 881 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCH1-215ENST00000547672 RBM24Q9BX46 236 aaKnown RBP11.92□□□□□ -0.5
PTCH1-215ENST00000547672 LINC00470Q9BZP3 86 aa11.92□□□□□ -0.5
PTCH1-215ENST00000547672 GLRX2Q9NS18 164 aa11.92□□□□□ -0.5
PTCH1-215ENST00000547672 FOXD3Q9UJU5 478 aaPredicted RBP11.92□□□□□ -0.5
PTCH1-215ENST00000547672 GDF2Q9UK05 429 aaPredicted RBP11.92□□□□□ -0.5
PTCH1-215ENST00000547672 HHLA2Q9UM44 414 aa11.92□□□□□ -0.5
PTCH1-215ENST00000547672 KCNMB2Q9Y691 235 aa11.92□□□□□ -0.5
PTCH1-215ENST00000547672 USP34Q70CQ2 3546 aa11.91□□□□□ -0.5
PTCH1-215ENST00000547672 IGHV3-15A0A0B4J1V0 119 aa11.91□□□□□ -0.5
PTCH1-215ENST00000547672 ZNF716A6NP11 495 aa11.91□□□□□ -0.5
PTCH1-215ENST00000547672 TFECO14948 347 aaPredicted RBP11.91□□□□□ -0.5
PTCH1-215ENST00000547672 GFRA3O60609 400 aa11.91□□□□□ -0.5
PTCH1-215ENST00000547672 RAMP1O60894 148 aa11.91□□□□□ -0.5
PTCH1-215ENST00000547672 UPK1BO75841 260 aa11.91□□□□□ -0.5
PTCH1-215ENST00000547672 GPANK1O95872 356 aa11.91□□□□□ -0.5
PTCH1-215ENST00000547672 CLEC2LP0C7M8 214 aa11.91□□□□□ -0.5
PTCH1-215ENST00000547672 ACHEP22303 614 aa11.91□□□□□ -0.5
PTCH1-215ENST00000547672 CTSSP25774 331 aa11.91□□□□□ -0.5
PTCH1-215ENST00000547672 CLDN18P56856 261 aa11.91□□□□□ -0.5
PTCH1-215ENST00000547672 SCAND1P57086 179 aa11.91□□□□□ -0.5
PTCH1-215ENST00000547672 NANOS3P60323 173 aaKnown RBP11.91□□□□□ -0.5
PTCH1-215ENST00000547672 NHLH1Q02575 133 aa11.91□□□□□ -0.5
PTCH1-215ENST00000547672 DBPQ10586 325 aaPredicted RBP11.91□□□□□ -0.5
PTCH1-215ENST00000547672 RSPO4Q2I0M5 234 aaPredicted RBP11.91□□□□□ -0.5
PTCH1-215ENST00000547672 BCL2L15Q5TBC7 163 aa11.91□□□□□ -0.5
PTCH1-215ENST00000547672 FAM27BQ5VT28 67 aa11.91□□□□□ -0.5
PTCH1-215ENST00000547672 OR7E24Q6IFN5 339 aa11.91□□□□□ -0.5
PTCH1-215ENST00000547672 SFXN4Q6P4A7 337 aa11.91□□□□□ -0.5
PTCH1-215ENST00000547672 IGFL3Q6UXB1 125 aa11.91□□□□□ -0.5
PTCH1-215ENST00000547672 BAIAP2L2Q6UXY1 529 aa11.91□□□□□ -0.5
PTCH1-215ENST00000547672 LRRC28Q86X40 367 aaPredicted RBP11.91□□□□□ -0.5
PTCH1-215ENST00000547672 TSEN15Q8WW01 171 aaKnown RBP11.91□□□□□ -0.5
PTCH1-215ENST00000547672 ROBO4Q8WZ75 1007 aa11.91□□□□□ -0.5
PTCH1-215ENST00000547672 FOXN4Q96NZ1 517 aa11.91□□□□□ -0.5
PTCH1-215ENST00000547672 ZNF385AQ96PM9 386 aaKnown RBP11.91□□□□□ -0.5
PTCH1-215ENST00000547672 OR14A2Q96R54 314 aa11.91□□□□□ -0.5
PTCH1-215ENST00000547672 ATF6BQ99941 703 aa11.91□□□□□ -0.5
PTCH1-215ENST00000547672 HES7Q9BYE0 225 aa11.91□□□□□ -0.5
PTCH1-215ENST00000547672 ZDHHC11Q9H8X9 412 aa11.91□□□□□ -0.5
PTCH1-215ENST00000547672 ABCB9Q9NP78 766 aa11.91□□□□□ -0.5
PTCH1-215ENST00000547672 NOX4Q9NPH5 578 aa11.91□□□□□ -0.5
PTCH1-215ENST00000547672 COMMD3Q9UBI1 195 aa11.91□□□□□ -0.5
PTCH1-215ENST00000547672 OR52A1Q9UKL2 312 aa11.91□□□□□ -0.5
PTCH1-215ENST00000547672 GTF2A1LQ9UNN4 478 aa11.91□□□□□ -0.5
PTCH1-215ENST00000547672 DHDHQ9UQ10 334 aa11.91□□□□□ -0.5
PTCH1-215ENST00000547672 NOSIPQ9Y314 301 aaKnown RBP11.91□□□□□ -0.5
PTCH1-215ENST00000547672 ZNF175Q9Y473 711 aa11.91□□□□□ -0.5
PTCH1-215ENST00000547672 PCDHGA9Q9Y5G4 932 aaKnown RBP11.91□□□□□ -0.5
PTCH1-215ENST00000547672 WDFY4Q6ZS81 3184 aa11.91□□□□□ -0.5
PTCH1-215ENST00000547672 J3QRK9 145 aa11.9□□□□□ -0.5
PTCH1-215ENST00000547672 KLK10O43240 276 aa11.9□□□□□ -0.5
PTCH1-215ENST00000547672 FARS2O95363 451 aaKnown RBP11.9□□□□□ -0.5
PTCH1-215ENST00000547672 CST2P09228 141 aa11.9□□□□□ -0.5
PTCH1-215ENST00000547672 WDR38Q5JTN6 314 aa11.9□□□□□ -0.5
PTCH1-215ENST00000547672 DPPA2Q7Z7J5 298 aa11.9□□□□□ -0.5
PTCH1-215ENST00000547672 LUZP2Q86TE4 346 aa11.9□□□□□ -0.5
PTCH1-215ENST00000547672 LSRQ86X29 649 aaPredicted RBP11.9□□□□□ -0.5
PTCH1-215ENST00000547672 C15orf40Q8WUR7 153 aa11.9□□□□□ -0.5
PTCH1-215ENST00000547672 FOXJ3Q9UPW0 622 aa11.9□□□□□ -0.5
PTCH1-215ENST00000547672 V9GY05 133 aa11.9□□□□□ -0.5
PTCH1-215ENST00000547672 TRBV5-7A0A0A0MS05 114 aa11.89□□□□□ -0.51
PTCH1-215ENST00000547672 IGKV1D-43A0A0B4J1Z2 117 aa11.89□□□□□ -0.51
PTCH1-215ENST00000547672 TTLL8A6PVC2 850 aa11.89□□□□□ -0.51
PTCH1-215ENST00000547672 PRR32B1ATL7 298 aa11.89□□□□□ -0.51
PTCH1-215ENST00000547672 FAM25AB3EWG3 89 aa11.89□□□□□ -0.51
PTCH1-215ENST00000547672 FAM25CB3EWG5 89 aa11.89□□□□□ -0.51
PTCH1-215ENST00000547672 FAM25GB3EWG6 89 aa11.89□□□□□ -0.51
PTCH1-215ENST00000547672 EFSO43281 561 aa11.89□□□□□ -0.51
PTCH1-215ENST00000547672 TPPPO94811 219 aa11.89□□□□□ -0.51
PTCH1-215ENST00000547672 IGHG3P01860 377 aa11.89□□□□□ -0.51
PTCH1-215ENST00000547672 APOA1P02647 267 aa11.89□□□□□ -0.51
PTCH1-215ENST00000547672 YES1P07947 543 aa11.89□□□□□ -0.51
PTCH1-215ENST00000547672 EPXP11678 715 aa11.89□□□□□ -0.51
PTCH1-215ENST00000547672 ZNF24P17028 368 aa11.89□□□□□ -0.51
PTCH1-215ENST00000547672 RPS27P42677 84 aaKnown RBP11.89□□□□□ -0.51
PTCH1-215ENST00000547672 EVX1P49640 407 aa11.89□□□□□ -0.51
PTCH1-215ENST00000547672 SELENOPP49908 381 aa11.89□□□□□ -0.51
PTCH1-215ENST00000547672 PITPNAQ00169 270 aa11.89□□□□□ -0.51
PTCH1-215ENST00000547672 SRYQ05066 204 aa11.89□□□□□ -0.51
PTCH1-215ENST00000547672 SCRN3Q0VDG4 424 aa11.89□□□□□ -0.51
PTCH1-215ENST00000547672 FAM131AQ6UXB0 335 aa11.89□□□□□ -0.51
PTCH1-215ENST00000547672 LRRC69Q6ZNQ3 347 aa11.89□□□□□ -0.51
PTCH1-215ENST00000547672 LINC00346Q8IVM7 164 aa11.89□□□□□ -0.51
PTCH1-215ENST00000547672 PRSS35Q8N3Z0 413 aa11.89□□□□□ -0.51
PTCH1-215ENST00000547672 SETD6Q8TBK2 473 aa11.89□□□□□ -0.51
PTCH1-215ENST00000547672 ITFG2Q969R8 447 aa11.89□□□□□ -0.51
PTCH1-215ENST00000547672 SPTSSAQ969W0 71 aa11.89□□□□□ -0.51
PTCH1-215ENST00000547672 RNF166Q96A37 237 aaPredicted RBP11.89□□□□□ -0.51
PTCH1-215ENST00000547672 FOXRED1Q96CU9 486 aaPredicted RBP11.89□□□□□ -0.51
PTCH1-215ENST00000547672 DCLRE1CQ96SD1 692 aaKnown RBP11.89□□□□□ -0.51
PTCH1-215ENST00000547672 AMELYQ99218 206 aa11.89□□□□□ -0.51
PTCH1-215ENST00000547672 KCNJ15Q99712 375 aa11.89□□□□□ -0.51
PTCH1-215ENST00000547672 SLC6A15Q9H2J7 730 aa11.89□□□□□ -0.51
PTCH1-215ENST00000547672 BCO1Q9HAY6 547 aa11.89□□□□□ -0.51
PTCH1-215ENST00000547672 DAPK2Q9UIK4 370 aa11.89□□□□□ -0.51
PTCH1-215ENST00000547672 ING1Q9UK53 422 aaPredicted RBP11.89□□□□□ -0.51
PTCH1-215ENST00000547672 EMC9Q9Y3B6 208 aa11.89□□□□□ -0.51
PTCH1-215ENST00000547672 LHFPL6Q9Y693 200 aa11.89□□□□□ -0.51
PTCH1-215ENST00000547672 MUC6Q6W4X9 2439 aa11.89□□□□□ -0.51
PTCH1-215ENST00000547672 PIEZO1Q92508 2521 aa11.88□□□□□ -0.51
Retrieved 100 of 20,778 RNA–protein pairs in 30 ms