RNA–Protein interactions for RNA: ENST00000543545.5

CPSF7-221, Transcript of cleavage and polyadenylation specific factor 7, human

TSL 5

Gene CPSF7, Length 495 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CPSF7-221	ENST00000543545	HCCS	P53701	268 aa		8.85	□□□□□ -0.99
CPSF7-221	ENST00000543545	PSG4	Q00888	419 aa		8.85	□□□□□ -0.99
CPSF7-221	ENST00000543545	TMEM108	Q6UXF1	575 aa		8.85	□□□□□ -0.99
CPSF7-221	ENST00000543545	SLC35F2	Q8IXU6	374 aa		8.85	□□□□□ -0.99
CPSF7-221	ENST00000543545	TIGD4	Q8IY51	512 aa		8.85	□□□□□ -0.99
CPSF7-221	ENST00000543545	ZNF454	Q8N9F8	522 aa		8.85	□□□□□ -0.99
CPSF7-221	ENST00000543545	OR10H4	Q8NGA5	316 aa		8.85	□□□□□ -0.99
CPSF7-221	ENST00000543545	OR4F15	Q8NGB8	312 aa		8.85	□□□□□ -0.99
CPSF7-221	ENST00000543545	APH1B	Q8WW43	257 aa		8.85	□□□□□ -0.99
CPSF7-221	ENST00000543545	TBX5	Q99593	518 aa		8.85	□□□□□ -0.99
CPSF7-221	ENST00000543545	SPOCK3	Q9BQ16	436 aa		8.85	□□□□□ -0.99
CPSF7-221	ENST00000543545	YIPF3	Q9GZM5	350 aa		8.85	□□□□□ -0.99
CPSF7-221	ENST00000543545	C1orf198	Q9H425	327 aa		8.85	□□□□□ -0.99
CPSF7-221	ENST00000543545	MARCH7	Q9H992	704 aa		8.85	□□□□□ -0.99
CPSF7-221	ENST00000543545	NOX3	Q9HBY0	568 aa		8.85	□□□□□ -0.99
CPSF7-221	ENST00000543545	HAO2	Q9NYQ3	351 aa		8.85	□□□□□ -0.99
CPSF7-221	ENST00000543545	ZNF224	Q9NZL3	707 aa		8.85	□□□□□ -0.99
CPSF7-221	ENST00000543545	CYB5R1	Q9UHQ9	305 aa		8.85	□□□□□ -0.99
CPSF7-221	ENST00000543545	GDF2	Q9UK05	429 aa	Predicted RBP	8.85	□□□□□ -0.99
CPSF7-221	ENST00000543545	FBXL3	Q9UKT7	428 aa		8.85	□□□□□ -0.99
CPSF7-221	ENST00000543545	SPTBN1	Q01082	2364 aa	Known RBP	8.85	□□□□□ -0.99
CPSF7-221	ENST00000543545	ZNF670-ZNF695	F2Z2N8	137 aa		8.84	□□□□□ -0.99
CPSF7-221	ENST00000543545	FADS2	O95864	444 aa	Known RBP	8.84	□□□□□ -0.99
CPSF7-221	ENST00000543545	SERPINA5	P05154	406 aa		8.84	□□□□□ -0.99
CPSF7-221	ENST00000543545	LYN	P07948	512 aa		8.84	□□□□□ -0.99
CPSF7-221	ENST00000543545	CELA3B	P08861	270 aa		8.84	□□□□□ -0.99
CPSF7-221	ENST00000543545	SBK2	P0C263	348 aa		8.84	□□□□□ -0.99
CPSF7-221	ENST00000543545	DBT	P11182	482 aa	Known RBP	8.84	□□□□□ -0.99
CPSF7-221	ENST00000543545	CRYGS	P22914	178 aa		8.84	□□□□□ -0.99
CPSF7-221	ENST00000543545	PTAFR	P25105	342 aa		8.84	□□□□□ -0.99
CPSF7-221	ENST00000543545	COL8A1	P27658	744 aa		8.84	□□□□□ -0.99
CPSF7-221	ENST00000543545	HTR5A	P47898	357 aa		8.84	□□□□□ -0.99
CPSF7-221	ENST00000543545	GDI2	P50395	445 aa	Known RBP	8.84	□□□□□ -0.99
CPSF7-221	ENST00000543545	CSNK2B	P67870	215 aa		8.84	□□□□□ -0.99
CPSF7-221	ENST00000543545	ZNF91	Q05481	1191 aa		8.84	□□□□□ -0.99
CPSF7-221	ENST00000543545	MED21	Q13503	144 aa		8.84	□□□□□ -0.99
CPSF7-221	ENST00000543545	GGTLC2	Q14390	218 aa		8.84	□□□□□ -0.99
CPSF7-221	ENST00000543545	KLHL22	Q53GT1	634 aa		8.84	□□□□□ -0.99
CPSF7-221	ENST00000543545	CCDC92	Q53HC0	331 aa	Predicted RBP	8.84	□□□□□ -0.99
CPSF7-221	ENST00000543545	BEX5	Q5H9J7	111 aa		8.84	□□□□□ -0.99
CPSF7-221	ENST00000543545	TEX30	Q5JUR7	227 aa		8.84	□□□□□ -0.99
CPSF7-221	ENST00000543545	ELFN2	Q5R3F8	820 aa		8.84	□□□□□ -0.99
CPSF7-221	ENST00000543545	C6orf141	Q5SZD1	244 aa		8.84	□□□□□ -0.99
CPSF7-221	ENST00000543545	CFAP77	Q6ZQR2	320 aa		8.84	□□□□□ -0.99
CPSF7-221	ENST00000543545	HIST2H2AB	Q8IUE6	130 aa	Predicted RBP	8.84	□□□□□ -0.99
CPSF7-221	ENST00000543545	ZNF786	Q8N393	782 aa		8.84	□□□□□ -0.99
CPSF7-221	ENST00000543545	FAM169B	Q8N8A8	192 aa		8.84	□□□□□ -0.99
CPSF7-221	ENST00000543545	SLC30A7	Q8NEW0	376 aa		8.84	□□□□□ -0.99
CPSF7-221	ENST00000543545	OR1J2	Q8NGS2	313 aa		8.84	□□□□□ -0.99
CPSF7-221	ENST00000543545	OR1F12	Q8NHA8	337 aa		8.84	□□□□□ -0.99
CPSF7-221	ENST00000543545	OTOS	Q8NHW6	89 aa		8.84	□□□□□ -0.99
CPSF7-221	ENST00000543545	LGALS12	Q96DT0	336 aa		8.84	□□□□□ -0.99
CPSF7-221	ENST00000543545	SLAMF6	Q96DU3	332 aa		8.84	□□□□□ -0.99
CPSF7-221	ENST00000543545	PIK3IP1	Q96FE7	263 aa		8.84	□□□□□ -0.99
CPSF7-221	ENST00000543545	PLPPR2	Q96GM1	343 aa		8.84	□□□□□ -0.99
CPSF7-221	ENST00000543545	MS4A3	Q96HJ5	214 aa		8.84	□□□□□ -0.99
CPSF7-221	ENST00000543545	RADIL	Q96JH8	1075 aa		8.84	□□□□□ -0.99
CPSF7-221	ENST00000543545	PSMG3-AS1	Q96PY0	264 aa		8.84	□□□□□ -0.99
CPSF7-221	ENST00000543545	COPS4	Q9BT78	406 aa		8.84	□□□□□ -0.99
CPSF7-221	ENST00000543545	WNT5B	Q9H1J7	359 aa		8.84	□□□□□ -0.99
CPSF7-221	ENST00000543545	ESRP2	Q9H6T0	727 aa	Known RBP	8.84	□□□□□ -0.99
CPSF7-221	ENST00000543545	CDH20	Q9HBT6	801 aa		8.84	□□□□□ -0.99
CPSF7-221	ENST00000543545	ADGRL4	Q9HBW9	690 aa		8.84	□□□□□ -0.99
CPSF7-221	ENST00000543545	SCN3B	Q9NY72	215 aa		8.84	□□□□□ -0.99
CPSF7-221	ENST00000543545	NPAP1	Q9NZP6	1156 aa		8.84	□□□□□ -0.99
CPSF7-221	ENST00000543545	PLEKHB1	Q9UF11	243 aa	Predicted RBP	8.84	□□□□□ -0.99
CPSF7-221	ENST00000543545	IKZF2	Q9UKS7	526 aa		8.84	□□□□□ -0.99
CPSF7-221	ENST00000543545	PCDHGB1	Q9Y5G3	927 aa		8.84	□□□□□ -0.99
CPSF7-221	ENST00000543545	TMEM14A	Q9Y6G1	99 aa		8.84	□□□□□ -0.99
CPSF7-221	ENST00000543545	ARHGAP21	Q5T5U3	1957 aa		8.84	□□□□□ -0.99
CPSF7-221	ENST00000543545	SPTAN1	Q13813	2472 aa	Known RBP	8.83	□□□□□ -1
CPSF7-221	ENST00000543545	FREM1	Q5H8C1	2179 aa		8.83	□□□□□ -1
CPSF7-221	ENST00000543545	IGHV1-18	A0A0C4DH31	117 aa		8.83	□□□□□ -1
CPSF7-221	ENST00000543545	MBD3L2B	A0A1B0GVZ6	204 aa	Predicted RBP	8.83	□□□□□ -1
CPSF7-221	ENST00000543545	DAPL1	A0PJW8	107 aa		8.83	□□□□□ -1
CPSF7-221	ENST00000543545	IRGM	A1A4Y4	181 aa		8.83	□□□□□ -1
CPSF7-221	ENST00000543545	C5orf49	A4QMS7	147 aa		8.83	□□□□□ -1
CPSF7-221	ENST00000543545	EFCAB10	A6NFE3	127 aa		8.83	□□□□□ -1
CPSF7-221	ENST00000543545	PTGES3L	E9PB15	166 aa		8.83	□□□□□ -1
CPSF7-221	ENST00000543545		F5H5K5	113 aa		8.83	□□□□□ -1
CPSF7-221	ENST00000543545	DENR	O43583	198 aa	Known RBP	8.83	□□□□□ -1
CPSF7-221	ENST00000543545	XPNPEP2	O43895	674 aa		8.83	□□□□□ -1
CPSF7-221	ENST00000543545	CRYAA	P02489	173 aa		8.83	□□□□□ -1
CPSF7-221	ENST00000543545	CD3E	P07766	207 aa		8.83	□□□□□ -1
CPSF7-221	ENST00000543545	OR2T7	P0C7T2	308 aa		8.83	□□□□□ -1
CPSF7-221	ENST00000543545	CECR9	P0C854	216 aa		8.83	□□□□□ -1
CPSF7-221	ENST00000543545	CCL2	P13500	99 aa		8.83	□□□□□ -1
CPSF7-221	ENST00000543545	IGFBP2	P18065	325 aa		8.83	□□□□□ -1
CPSF7-221	ENST00000543545	ALOX5AP	P20292	161 aa		8.83	□□□□□ -1
CPSF7-221	ENST00000543545	CD40	P25942	277 aa		8.83	□□□□□ -1
CPSF7-221	ENST00000543545	STOM	P27105	288 aa		8.83	□□□□□ -1
CPSF7-221	ENST00000543545	APEX1	P27695	318 aa	Known RBP	8.83	□□□□□ -1
CPSF7-221	ENST00000543545	SLC15A1	P46059	708 aa		8.83	□□□□□ -1
CPSF7-221	ENST00000543545	GALK2	Q01415	458 aa		8.83	□□□□□ -1
CPSF7-221	ENST00000543545	RAB40B	Q12829	278 aa		8.83	□□□□□ -1
CPSF7-221	ENST00000543545	ECH1	Q13011	328 aa		8.83	□□□□□ -1
CPSF7-221	ENST00000543545	RAB35	Q15286	201 aa		8.83	□□□□□ -1
CPSF7-221	ENST00000543545	PCK2	Q16822	640 aa		8.83	□□□□□ -1
CPSF7-221	ENST00000543545	TBC1D28	Q2M2D7	210 aa		8.83	□□□□□ -1
CPSF7-221	ENST00000543545	SLC22A25	Q6T423	547 aa		8.83	□□□□□ -1

Retrieved 100 of 20,778 RNA–protein pairs in 27.6 ms