RNA–Protein interactions for RNA: ENST00000539417.6

RPAIN-206, Transcript of RPA interacting protein, humanhuman

TSL 2

Gene RPAIN, Length 1,471 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RPAIN-206ENST00000539417 KLHL21Q9UJP4 597 aa13.58□□□□□ -0.24
RPAIN-206ENST00000539417 GDF2Q9UK05 429 aaPredicted RBP13.58□□□□□ -0.24
RPAIN-206ENST00000539417 IQCMA0A1B0GVH7 501 aa13.57□□□□□ -0.24
RPAIN-206ENST00000539417 SMPD2O60906 423 aa13.57□□□□□ -0.24
RPAIN-206ENST00000539417 CCNOP22674 350 aa13.57□□□□□ -0.24
RPAIN-206ENST00000539417 GGT2P36268 569 aa13.57□□□□□ -0.24
RPAIN-206ENST00000539417 PPP2R2BQ00005 443 aa13.57□□□□□ -0.24
RPAIN-206ENST00000539417 PLP2Q04941 152 aa13.57□□□□□ -0.24
RPAIN-206ENST00000539417 PTGES3Q15185 160 aaKnown RBP13.57□□□□□ -0.24
RPAIN-206ENST00000539417 SWI5Q1ZZU3 235 aa13.57□□□□□ -0.24
RPAIN-206ENST00000539417 ZFP1Q6P2D0 407 aa13.57□□□□□ -0.24
RPAIN-206ENST00000539417 CFAP77Q6ZQR2 320 aa13.57□□□□□ -0.24
RPAIN-206ENST00000539417 VASH1Q7L8A9 365 aaPredicted RBP13.57□□□□□ -0.24
RPAIN-206ENST00000539417 SYT9Q86SS6 491 aa13.57□□□□□ -0.24
RPAIN-206ENST00000539417 ZNF101Q8IZC7 436 aa13.57□□□□□ -0.24
RPAIN-206ENST00000539417 FBXL14Q8N1E6 418 aa13.57□□□□□ -0.24
RPAIN-206ENST00000539417 PARP8Q8N3A8 854 aa13.57□□□□□ -0.24
RPAIN-206ENST00000539417 SVOPLQ8N434 492 aa13.57□□□□□ -0.24
RPAIN-206ENST00000539417 PROKR2Q8NFJ6 384 aa13.57□□□□□ -0.24
RPAIN-206ENST00000539417 BBS1Q8NFJ9 593 aa13.57□□□□□ -0.24
RPAIN-206ENST00000539417 CACNG6Q9BXT2 260 aa13.57□□□□□ -0.24
RPAIN-206ENST00000539417 WDR76Q9H967 626 aa13.57□□□□□ -0.24
RPAIN-206ENST00000539417 HINT3Q9NQE9 182 aaKnown RBP13.57□□□□□ -0.24
RPAIN-206ENST00000539417 CBLN4Q9NTU7 201 aa13.57□□□□□ -0.24
RPAIN-206ENST00000539417 MYEF2Q9P2K5 600 aaKnown RBP13.57□□□□□ -0.24
RPAIN-206ENST00000539417 FBXL3Q9UKT7 428 aa13.57□□□□□ -0.24
RPAIN-206ENST00000539417 EDARQ9UNE0 448 aa13.57□□□□□ -0.24
RPAIN-206ENST00000539417 C5orf49A4QMS7 147 aa13.56□□□□□ -0.24
RPAIN-206ENST00000539417 RIIAD1A6NNX1 92 aa13.56□□□□□ -0.24
RPAIN-206ENST00000539417 SYNGR3O43761 229 aa13.56□□□□□ -0.24
RPAIN-206ENST00000539417 DOK2O60496 412 aa13.56□□□□□ -0.24
RPAIN-206ENST00000539417 HLA-DQA2P01906 255 aa13.56□□□□□ -0.24
RPAIN-206ENST00000539417 DBHP09172 617 aa13.56□□□□□ -0.24
RPAIN-206ENST00000539417 SERPINF1P36955 418 aa13.56□□□□□ -0.24
RPAIN-206ENST00000539417 SLC25A1P53007 311 aa13.56□□□□□ -0.24
RPAIN-206ENST00000539417 PCBD1P61457 104 aa13.56□□□□□ -0.24
RPAIN-206ENST00000539417 HIST1H3AP68431 136 aa13.56□□□□□ -0.24
RPAIN-206ENST00000539417 AQP6Q13520 282 aa13.56□□□□□ -0.24
RPAIN-206ENST00000539417 TBC1D28Q2M2D7 210 aa13.56□□□□□ -0.24
RPAIN-206ENST00000539417 TMEM255AQ5JRV8 349 aa13.56□□□□□ -0.24
RPAIN-206ENST00000539417 HIST2H3PS2Q5TEC6 136 aa13.56□□□□□ -0.24
RPAIN-206ENST00000539417 AGAP6Q5VW22 663 aa13.56□□□□□ -0.24
RPAIN-206ENST00000539417 SLC18B1Q6NT16 456 aa13.56□□□□□ -0.24
RPAIN-206ENST00000539417 PLBD1Q6P4A8 553 aa13.56□□□□□ -0.24
RPAIN-206ENST00000539417 HIST2H3AQ71DI3 136 aa13.56□□□□□ -0.24
RPAIN-206ENST00000539417 WFDC11Q8NEX6 87 aa13.56□□□□□ -0.24
RPAIN-206ENST00000539417 OR2T4Q8NH00 348 aa13.56□□□□□ -0.24
RPAIN-206ENST00000539417 OTULINQ96BN8 352 aa13.56□□□□□ -0.24
RPAIN-206ENST00000539417 OSBPL10Q9BXB5 764 aa13.56□□□□□ -0.24
RPAIN-206ENST00000539417 MRPL37Q9BZE1 423 aaKnown RBP13.56□□□□□ -0.24
RPAIN-206ENST00000539417 ZNF442Q9H7R0 627 aa13.56□□□□□ -0.24
RPAIN-206ENST00000539417 CDH20Q9HBT6 801 aa13.56□□□□□ -0.24
RPAIN-206ENST00000539417 TVP23BQ9NYZ1 205 aa13.56□□□□□ -0.24
RPAIN-206ENST00000539417 ITPR3Q14573 2671 aa13.56□□□□□ -0.24
RPAIN-206ENST00000539417 SGCEO43556 437 aa13.55□□□□□ -0.24
RPAIN-206ENST00000539417 SNAP29O95721 258 aa13.55□□□□□ -0.24
RPAIN-206ENST00000539417 NGFP01138 241 aa13.55□□□□□ -0.24
RPAIN-206ENST00000539417 IFNGP01579 166 aa13.55□□□□□ -0.24
RPAIN-206ENST00000539417 PAX1P15863 534 aa13.55□□□□□ -0.24
RPAIN-206ENST00000539417 ZNF3P17036 446 aa13.55□□□□□ -0.24
RPAIN-206ENST00000539417 APLNRP35414 380 aa13.55□□□□□ -0.24
RPAIN-206ENST00000539417 ADAM8P78325 824 aa13.55□□□□□ -0.24
RPAIN-206ENST00000539417 GLO1Q04760 184 aa13.55□□□□□ -0.24
RPAIN-206ENST00000539417 RSPO1Q2MKA7 263 aaPredicted RBP13.55□□□□□ -0.24
RPAIN-206ENST00000539417 RFPL4BQ6ZWI9 263 aa13.55□□□□□ -0.24
RPAIN-206ENST00000539417 BCDIN3DQ7Z5W3 292 aaKnown RBP13.55□□□□□ -0.24
RPAIN-206ENST00000539417 CPOQ8IVL8 374 aa13.55□□□□□ -0.24
RPAIN-206ENST00000539417 ZCCHC24Q8N2G6 241 aaKnown RBP13.55□□□□□ -0.24
RPAIN-206ENST00000539417 MAP6Q96JE9 813 aa13.55□□□□□ -0.24
RPAIN-206ENST00000539417 GSX2Q9BZM3 304 aa13.55□□□□□ -0.24
RPAIN-206ENST00000539417 POFUT1Q9H488 388 aa13.55□□□□□ -0.24
RPAIN-206ENST00000539417 FAIMQ9NVQ4 179 aa13.55□□□□□ -0.24
RPAIN-206ENST00000539417 CYB5R1Q9UHQ9 305 aa13.55□□□□□ -0.24
RPAIN-206ENST00000539417 POLR1DQ9Y2S0 133 aa13.55□□□□□ -0.24
RPAIN-206ENST00000539417 COMMD3-BMI1R4GMX3 469 aa13.55□□□□□ -0.24
RPAIN-206ENST00000539417 ARFGEF3Q5TH69 2177 aa13.55□□□□□ -0.24
RPAIN-206ENST00000539417 HIVEP1P15822 2718 aa13.55□□□□□ -0.24
RPAIN-206ENST00000539417 OR6C6A6NF89 314 aa13.55□□□□□ -0.24
RPAIN-206ENST00000539417 ZAR1LA6NP61 321 aa13.55□□□□□ -0.24
RPAIN-206ENST00000539417 EI24O14681 340 aa13.55□□□□□ -0.24
RPAIN-206ENST00000539417 PRKYO43930 277 aa13.55□□□□□ -0.24
RPAIN-206ENST00000539417 IGHV4-39P01824 125 aa13.55□□□□□ -0.24
RPAIN-206ENST00000539417 IGFBP5P24593 272 aa13.55□□□□□ -0.24
RPAIN-206ENST00000539417 GLRXP35754 106 aa13.55□□□□□ -0.24
RPAIN-206ENST00000539417 HTR5AP47898 357 aa13.55□□□□□ -0.24
RPAIN-206ENST00000539417 GDI2P50395 445 aaKnown RBP13.55□□□□□ -0.24
RPAIN-206ENST00000539417 UCP2P55851 309 aa13.55□□□□□ -0.24
RPAIN-206ENST00000539417 GALK2Q01415 458 aa13.55□□□□□ -0.24
RPAIN-206ENST00000539417 SCRN3Q0VDG4 424 aa13.55□□□□□ -0.24
RPAIN-206ENST00000539417 TMEM154Q6P9G4 183 aa13.55□□□□□ -0.24
RPAIN-206ENST00000539417 OR10S1Q8NGN2 331 aa13.55□□□□□ -0.24
RPAIN-206ENST00000539417 OR6K6Q8NGW6 343 aa13.55□□□□□ -0.24
RPAIN-206ENST00000539417 DNAJC9Q8WXX5 260 aa13.55□□□□□ -0.24
RPAIN-206ENST00000539417 SLC29A1Q99808 456 aa13.55□□□□□ -0.24
RPAIN-206ENST00000539417 SYT3Q9BQG1 590 aa13.55□□□□□ -0.24
RPAIN-206ENST00000539417 GRIP2Q9C0E4 1043 aa13.55□□□□□ -0.24
RPAIN-206ENST00000539417 OR51V1Q9H2C8 321 aa13.55□□□□□ -0.24
RPAIN-206ENST00000539417 C1orf198Q9H425 327 aa13.55□□□□□ -0.24
RPAIN-206ENST00000539417 CXorf56Q9H5V9 222 aa13.55□□□□□ -0.24
RPAIN-206ENST00000539417 PNRC2Q9NPJ4 139 aaKnown RBP13.55□□□□□ -0.24
Retrieved 100 of 20,778 RNA–protein pairs in 42.7 ms