RNA–Protein interactions for RNA: ENST00000533806.5

VPS28-216, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 3

Gene VPS28, Length 650 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-216ENST00000533806 SVOPLQ8N434 492 aa11.15□□□□□ -0.62
VPS28-216ENST00000533806 CYB561A3Q8NBI2 242 aa11.15□□□□□ -0.62
VPS28-216ENST00000533806 OR10H5Q8NGA6 315 aa11.15□□□□□ -0.62
VPS28-216ENST00000533806 C18orf12Q96KH6 178 aa11.15□□□□□ -0.62
VPS28-216ENST00000533806 COX4I2Q96KJ9 171 aa11.15□□□□□ -0.62
VPS28-216ENST00000533806 SORCS2Q96PQ0 1159 aa11.15□□□□□ -0.62
VPS28-216ENST00000533806 FN3KQ9H479 309 aa11.15□□□□□ -0.62
VPS28-216ENST00000533806 RERGLQ9H628 205 aa11.15□□□□□ -0.62
VPS28-216ENST00000533806 CDH20Q9HBT6 801 aa11.15□□□□□ -0.62
VPS28-216ENST00000533806 CMC2Q9NRP2 79 aa11.15□□□□□ -0.62
VPS28-216ENST00000533806 TBC1D23Q9NUY8 699 aa11.15□□□□□ -0.62
VPS28-216ENST00000533806 MRPL22Q9NWU5 206 aaKnown RBP11.15□□□□□ -0.62
VPS28-216ENST00000533806 MYEF2Q9P2K5 600 aaKnown RBP11.15□□□□□ -0.62
VPS28-216ENST00000533806 ASH2LQ9UBL3 628 aa11.15□□□□□ -0.62
VPS28-216ENST00000533806 FBXO9Q9UK97 447 aaPredicted RBP11.15□□□□□ -0.62
VPS28-216ENST00000533806 AP4S1Q9Y587 144 aa11.15□□□□□ -0.62
VPS28-216ENST00000533806 MED13LQ71F56 2210 aa11.15□□□□□ -0.63
VPS28-216ENST00000533806 ARFGEF3Q5TH69 2177 aa11.14□□□□□ -0.63
VPS28-216ENST00000533806 C5orf49A4QMS7 147 aa11.14□□□□□ -0.63
VPS28-216ENST00000533806 EBAG9O00559 213 aa11.14□□□□□ -0.63
VPS28-216ENST00000533806 RER1O15258 196 aa11.14□□□□□ -0.63
VPS28-216ENST00000533806 SGCEO43556 437 aa11.14□□□□□ -0.63
VPS28-216ENST00000533806 E2F6O75461 281 aa11.14□□□□□ -0.63
VPS28-216ENST00000533806 FAM157BP0CG42 384 aa11.14□□□□□ -0.63
VPS28-216ENST00000533806 OSMP13725 252 aa11.14□□□□□ -0.63
VPS28-216ENST00000533806 GDI2P50395 445 aaKnown RBP11.14□□□□□ -0.63
VPS28-216ENST00000533806 SLC25A1P53007 311 aa11.14□□□□□ -0.63
VPS28-216ENST00000533806 ERVS71-1P61550 626 aa11.14□□□□□ -0.63
VPS28-216ENST00000533806 RPS23P62266 143 aaKnown RBP11.14□□□□□ -0.63
VPS28-216ENST00000533806 SNRPD2P62316 118 aaKnown RBP11.14□□□□□ -0.63
VPS28-216ENST00000533806 CDK5Q00535 292 aa11.14□□□□□ -0.63
VPS28-216ENST00000533806 SCRN3Q0VDG4 424 aa11.14□□□□□ -0.63
VPS28-216ENST00000533806 TNK1Q13470 666 aa11.14□□□□□ -0.63
VPS28-216ENST00000533806 CRMP1Q14194 572 aa11.14□□□□□ -0.63
VPS28-216ENST00000533806 CLEC12BQ2HXU8 276 aa11.14□□□□□ -0.63
VPS28-216ENST00000533806 RSPO1Q2MKA7 263 aaPredicted RBP11.14□□□□□ -0.63
VPS28-216ENST00000533806 KRTAP27-1Q3LI81 207 aa11.14□□□□□ -0.63
VPS28-216ENST00000533806 ACSM5Q6NUN0 579 aa11.14□□□□□ -0.63
VPS28-216ENST00000533806 OR5K1Q8NHB7 308 aa11.14□□□□□ -0.63
VPS28-216ENST00000533806 PTP4A1Q93096 173 aa11.14□□□□□ -0.63
VPS28-216ENST00000533806 BDH2Q9BUT1 245 aa11.14□□□□□ -0.63
VPS28-216ENST00000533806 BCL2L14Q9BZR8 327 aa11.14□□□□□ -0.63
VPS28-216ENST00000533806 CYB5R1Q9UHQ9 305 aa11.14□□□□□ -0.63
VPS28-216ENST00000533806 ATPIF1Q9UII2 106 aa11.14□□□□□ -0.63
VPS28-216ENST00000533806 A0A096LNT2 108 aa11.13□□□□□ -0.63
VPS28-216ENST00000533806 FAM171A2A8MVW0 826 aa11.13□□□□□ -0.63
VPS28-216ENST00000533806 H7C1Q1 480 aa11.13□□□□□ -0.63
VPS28-216ENST00000533806 SSX4O60224 188 aa11.13□□□□□ -0.63
VPS28-216ENST00000533806 LY6HO94772 140 aa11.13□□□□□ -0.63
VPS28-216ENST00000533806 CLPTM1O96005 669 aa11.13□□□□□ -0.63
VPS28-216ENST00000533806 NGFP01138 241 aa11.13□□□□□ -0.63
VPS28-216ENST00000533806 GRK5P34947 590 aa11.13□□□□□ -0.63
VPS28-216ENST00000533806 DAPP51397 102 aa11.13□□□□□ -0.63
VPS28-216ENST00000533806 ACTR3P61158 418 aa11.13□□□□□ -0.63
VPS28-216ENST00000533806 TEKQ02763 1124 aa11.13□□□□□ -0.63
VPS28-216ENST00000533806 PCK2Q16822 640 aa11.13□□□□□ -0.63
VPS28-216ENST00000533806 TMEM255AQ5JRV8 349 aa11.13□□□□□ -0.63
VPS28-216ENST00000533806 LINC01590Q5TEZ4 76 aa11.13□□□□□ -0.63
VPS28-216ENST00000533806 SLC18B1Q6NT16 456 aa11.13□□□□□ -0.63
VPS28-216ENST00000533806 ZCCHC24Q8N2G6 241 aaKnown RBP11.13□□□□□ -0.63
VPS28-216ENST00000533806 PARP8Q8N3A8 854 aa11.13□□□□□ -0.63
VPS28-216ENST00000533806 IQCF1Q8N6M8 205 aa11.13□□□□□ -0.63
VPS28-216ENST00000533806 DNAJC9Q8WXX5 260 aa11.13□□□□□ -0.63
VPS28-216ENST00000533806 MARS2Q96GW9 593 aaKnown RBP11.13□□□□□ -0.63
VPS28-216ENST00000533806 SYT3Q9BQG1 590 aa11.13□□□□□ -0.63
VPS28-216ENST00000533806 HCAR1Q9BXC0 346 aa11.13□□□□□ -0.63
VPS28-216ENST00000533806 ZKSCAN7Q9P0L1 754 aaPredicted RBP11.13□□□□□ -0.63
VPS28-216ENST00000533806 KLHL21Q9UJP4 597 aa11.13□□□□□ -0.63
VPS28-216ENST00000533806 NDRG4Q9ULP0 352 aaKnown RBP11.13□□□□□ -0.63
VPS28-216ENST00000533806 FZR1Q9UM11 496 aa11.13□□□□□ -0.63
VPS28-216ENST00000533806 ZFHX3Q15911 3703 aa11.12□□□□□ -0.63
VPS28-216ENST00000533806 H3BN98 237 aa11.12□□□□□ -0.63
VPS28-216ENST00000533806 IGHV3-13P01766 116 aa11.12□□□□□ -0.63
VPS28-216ENST00000533806 ADRA2AP08913 450 aa11.12□□□□□ -0.63
VPS28-216ENST00000533806 INHBBP09529 407 aa11.12□□□□□ -0.63
VPS28-216ENST00000533806 CLUP10909 449 aa11.12□□□□□ -0.63
VPS28-216ENST00000533806 PSKH1P11801 424 aa11.12□□□□□ -0.63
VPS28-216ENST00000533806 SPI1P17947 270 aa11.12□□□□□ -0.63
VPS28-216ENST00000533806 FASP25445 335 aa11.12□□□□□ -0.63
VPS28-216ENST00000533806 PYCR1P32322 319 aa11.12□□□□□ -0.63
VPS28-216ENST00000533806 ARHGDIAP52565 204 aa11.12□□□□□ -0.63
VPS28-216ENST00000533806 NUDT6P53370 316 aa11.12□□□□□ -0.63
VPS28-216ENST00000533806 GINS1Q14691 196 aa11.12□□□□□ -0.63
VPS28-216ENST00000533806 TEX30Q5JUR7 227 aa11.12□□□□□ -0.63
VPS28-216ENST00000533806 RGS7BPQ6MZT1 257 aaPredicted RBP11.12□□□□□ -0.63
VPS28-216ENST00000533806 SLC27A4Q6P1M0 643 aa11.12□□□□□ -0.63
VPS28-216ENST00000533806 CORO6Q6QEF8 472 aa11.12□□□□□ -0.63
VPS28-216ENST00000533806 LYPD4Q6UWN0 246 aa11.12□□□□□ -0.63
VPS28-216ENST00000533806 RFPL4BQ6ZWI9 263 aa11.12□□□□□ -0.63
VPS28-216ENST00000533806 C1orf174Q8IYL3 243 aa11.12□□□□□ -0.63
VPS28-216ENST00000533806 ZNF525Q8N782 197 aa11.12□□□□□ -0.63
VPS28-216ENST00000533806 GJC3Q8NFK1 279 aa11.12□□□□□ -0.63
VPS28-216ENST00000533806 OR2T4Q8NH00 348 aa11.12□□□□□ -0.63
VPS28-216ENST00000533806 OR1F12Q8NHA8 337 aa11.12□□□□□ -0.63
VPS28-216ENST00000533806 TEX47Q8TBZ9 253 aa11.12□□□□□ -0.63
VPS28-216ENST00000533806 LRTOMTQ8WZ04 291 aa11.12□□□□□ -0.63
VPS28-216ENST00000533806 C4orf45Q96LM5 186 aa11.12□□□□□ -0.63
VPS28-216ENST00000533806 ZNF556Q9HAH1 456 aa11.12□□□□□ -0.63
VPS28-216ENST00000533806 PNRC2Q9NPJ4 139 aaKnown RBP11.12□□□□□ -0.63
VPS28-216ENST00000533806 TBCCD1Q9NVR7 557 aa11.12□□□□□ -0.63
Retrieved 100 of 20,778 RNA–protein pairs in 27.9 ms