RNA–Protein interactions for RNA: ENST00000531141.1

CD44-233, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 2

Gene CD44, Length 537 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-233ENST00000531141 CEP290O15078 2479 aa2.16□□□□□ -2.06
CD44-233ENST00000531141 LMTK2Q8IWU2 1503 aa2.16□□□□□ -2.06
CD44-233ENST00000531141 DUOX2Q9NRD8 1548 aa2.16□□□□□ -2.06
CD44-233ENST00000531141 CENPJQ9HC77 1338 aaPredicted RBP2.16□□□□□ -2.06
CD44-233ENST00000531141 LRRIQ1Q96JM4 1722 aa2.15□□□□□ -2.07
CD44-233ENST00000531141 PEAK1Q9H792 1746 aa2.15□□□□□ -2.07
CD44-233ENST00000531141 IGHV3-74A0A0B4J1X5 117 aa2.15□□□□□ -2.07
CD44-233ENST00000531141 A0A0U1RQS6 177 aa2.15□□□□□ -2.07
CD44-233ENST00000531141 KMOO15229 486 aa2.15□□□□□ -2.07
CD44-233ENST00000531141 SLC25A14O95258 325 aaPredicted RBP2.15□□□□□ -2.07
CD44-233ENST00000531141 RHOXF2BP0C7M4 288 aa2.15□□□□□ -2.07
CD44-233ENST00000531141 IGHV1-8P0DP01 117 aa2.15□□□□□ -2.07
CD44-233ENST00000531141 CALM1P0DP23 149 aa2.15□□□□□ -2.07
CD44-233ENST00000531141 CALM2P0DP24 149 aa2.15□□□□□ -2.07
CD44-233ENST00000531141 CALM3P0DP25 149 aa2.15□□□□□ -2.07
CD44-233ENST00000531141 PGAM1P18669 254 aa2.15□□□□□ -2.07
CD44-233ENST00000531141 MX1P20591 662 aa2.15□□□□□ -2.07
CD44-233ENST00000531141 IFNA8P32881 189 aa2.15□□□□□ -2.07
CD44-233ENST00000531141 CRYBB2P43320 205 aa2.15□□□□□ -2.07
CD44-233ENST00000531141 GK3PQ14409 553 aa2.15□□□□□ -2.07
CD44-233ENST00000531141 PON3Q15166 354 aa2.15□□□□□ -2.07
CD44-233ENST00000531141 Q5W150 140 aa2.15□□□□□ -2.07
CD44-233ENST00000531141 CCDC73Q6ZRK6 1079 aa2.15□□□□□ -2.07
CD44-233ENST00000531141 BIVMQ86UB2 503 aa2.15□□□□□ -2.07
CD44-233ENST00000531141 PGAM4Q8N0Y7 254 aa2.15□□□□□ -2.07
CD44-233ENST00000531141 LYPD1Q8N2G4 141 aa2.15□□□□□ -2.07
CD44-233ENST00000531141 SDR9C7Q8NEX9 313 aa2.15□□□□□ -2.07
CD44-233ENST00000531141 OR4F6Q8NGB9 312 aa2.15□□□□□ -2.07
CD44-233ENST00000531141 PIBF1Q8WXW3 757 aa2.15□□□□□ -2.07
CD44-233ENST00000531141 PIK3IP1Q96FE7 263 aa2.15□□□□□ -2.07
CD44-233ENST00000531141 PDXPQ96GD0 296 aa2.15□□□□□ -2.07
CD44-233ENST00000531141 CTRCQ99895 268 aa2.15□□□□□ -2.07
CD44-233ENST00000531141 RSPO3Q9BXY4 272 aaPredicted RBP2.15□□□□□ -2.07
CD44-233ENST00000531141 SUN2Q9UH99 717 aa2.15□□□□□ -2.07
CD44-233ENST00000531141 ZNF222Q9UK12 451 aa2.15□□□□□ -2.07
CD44-233ENST00000531141 EIF2AK4Q9P2K8 1649 aaKnown RBP2.15□□□□□ -2.07
CD44-233ENST00000531141 PIEZO1Q92508 2521 aa2.15□□□□□ -2.07
CD44-233ENST00000531141 ARHGEF5Q12774 1597 aa2.15□□□□□ -2.07
CD44-233ENST00000531141 MUC3AQ02505 3323 aa2.14□□□□□ -2.07
CD44-233ENST00000531141 QSER1Q2KHR3 1735 aa2.14□□□□□ -2.07
CD44-233ENST00000531141 PARP4Q9UKK3 1724 aaKnown RBP2.14□□□□□ -2.07
CD44-233ENST00000531141 A0A1B0GVX0 72 aa2.14□□□□□ -2.07
CD44-233ENST00000531141 A0A1W2PP18 115 aa2.14□□□□□ -2.07
CD44-233ENST00000531141 ZNF705GA8MUZ8 300 aaPredicted RBP2.14□□□□□ -2.07
CD44-233ENST00000531141 SERPINE3A8MV23 424 aa2.14□□□□□ -2.07
CD44-233ENST00000531141 HIDE1A8MVS5 230 aa2.14□□□□□ -2.07
CD44-233ENST00000531141 UTS2O95399 124 aa2.14□□□□□ -2.07
CD44-233ENST00000531141 HRH1P35367 487 aa2.14□□□□□ -2.07
CD44-233ENST00000531141 NAMPTP43490 491 aa2.14□□□□□ -2.07
CD44-233ENST00000531141 RFX3P48380 749 aa2.14□□□□□ -2.07
CD44-233ENST00000531141 KRTAP10-10P60014 251 aa2.14□□□□□ -2.07
CD44-233ENST00000531141 RAP1AP62834 184 aa2.14□□□□□ -2.07
CD44-233ENST00000531141 IRX3P78415 501 aaPredicted RBP2.14□□□□□ -2.07
CD44-233ENST00000531141 TCP10Q12799 353 aa2.14□□□□□ -2.07
CD44-233ENST00000531141 GINS1Q14691 196 aa2.14□□□□□ -2.07
CD44-233ENST00000531141 PP632Q6XCG6 107 aa2.14□□□□□ -2.07
CD44-233ENST00000531141 OAFQ86UD1 273 aa2.14□□□□□ -2.07
CD44-233ENST00000531141 NBPF5PQ86XG9 351 aaPredicted RBP2.14□□□□□ -2.07
CD44-233ENST00000531141 DEFB123Q8N688 67 aa2.14□□□□□ -2.07
CD44-233ENST00000531141 OR10R2Q8NGX6 335 aa2.14□□□□□ -2.07
CD44-233ENST00000531141 OR5W2Q8NH69 310 aa2.14□□□□□ -2.07
CD44-233ENST00000531141 CREB3L1Q96BA8 519 aa2.14□□□□□ -2.07
CD44-233ENST00000531141 FAM3DQ96BQ1 224 aa2.14□□□□□ -2.07
CD44-233ENST00000531141 ZNF578Q96N58 590 aaPredicted RBP2.14□□□□□ -2.07
CD44-233ENST00000531141 GON7Q9BXV9 100 aa2.14□□□□□ -2.07
CD44-233ENST00000531141 RPF2Q9H7B2 306 aaKnown RBP2.14□□□□□ -2.07
CD44-233ENST00000531141 SIRT7Q9NRC8 400 aa2.14□□□□□ -2.07
CD44-233ENST00000531141 ZNF629Q9UEG4 869 aaPredicted RBP2.14□□□□□ -2.07
CD44-233ENST00000531141 KIAA1257Q9ULG3 409 aa2.14□□□□□ -2.07
CD44-233ENST00000531141 CRB1P82279 1406 aa2.14□□□□□ -2.07
CD44-233ENST00000531141 NAIPQ13075 1403 aa2.14□□□□□ -2.07
CD44-233ENST00000531141 UNC79Q9P2D8 2635 aa2.14□□□□□ -2.07
CD44-233ENST00000531141 FMN2Q9NZ56 1722 aa2.14□□□□□ -2.07
CD44-233ENST00000531141 SBF1O95248 1867 aa2.14□□□□□ -2.07
CD44-233ENST00000531141 PAPPAQ13219 1627 aa2.13□□□□□ -2.07
CD44-233ENST00000531141 GCC2Q8IWJ2 1684 aa2.13□□□□□ -2.07
CD44-233ENST00000531141 VAMP5O95183 116 aa2.13□□□□□ -2.07
CD44-233ENST00000531141 RAB3DO95716 219 aa2.13□□□□□ -2.07
CD44-233ENST00000531141 FABP3P05413 133 aa2.13□□□□□ -2.07
CD44-233ENST00000531141 MCF2P10911 925 aa2.13□□□□□ -2.07
CD44-233ENST00000531141 PRPS2P11908 318 aa2.13□□□□□ -2.07
CD44-233ENST00000531141 KITLGP21583 273 aa2.13□□□□□ -2.07
CD44-233ENST00000531141 TPMTP51580 245 aa2.13□□□□□ -2.07
CD44-233ENST00000531141 PLP1P60201 277 aa2.13□□□□□ -2.07
CD44-233ENST00000531141 BST2Q10589 180 aaKnown RBP2.13□□□□□ -2.07
CD44-233ENST00000531141 CLINT1Q14677 625 aa2.13□□□□□ -2.07
CD44-233ENST00000531141 STK11Q15831 433 aa2.13□□□□□ -2.07
CD44-233ENST00000531141 LY6EQ16553 131 aa2.13□□□□□ -2.07
CD44-233ENST00000531141 POU2AF1Q16633 256 aa2.13□□□□□ -2.07
CD44-233ENST00000531141 FBXW9Q5XUX1 488 aa2.13□□□□□ -2.07
CD44-233ENST00000531141 HDDC2Q7Z4H3 204 aa2.13□□□□□ -2.07
CD44-233ENST00000531141 UBALD2Q8IYN6 164 aa2.13□□□□□ -2.07
CD44-233ENST00000531141 PDIK1LQ8N165 341 aa2.13□□□□□ -2.07
CD44-233ENST00000531141 RNF182Q8N6D2 247 aa2.13□□□□□ -2.07
CD44-233ENST00000531141 ZNF615Q8N8J6 731 aa2.13□□□□□ -2.07
CD44-233ENST00000531141 SYNPRQ8TBG9 265 aa2.13□□□□□ -2.07
CD44-233ENST00000531141 ZNF721Q8TF20 911 aa2.13□□□□□ -2.07
CD44-233ENST00000531141 NT5C3BQ969T7 300 aa2.13□□□□□ -2.07
CD44-233ENST00000531141 TCHPQ9BT92 498 aa2.13□□□□□ -2.07
CD44-233ENST00000531141 GCOM2Q9BZD3 368 aaPredicted RBP2.13□□□□□ -2.07
Retrieved 100 of 20,778 RNA–protein pairs in 54.7 ms