RNA–Protein interactions for RNA: ENST00000514987.5

NUP54-217, Transcript of nucleoporin 54, humanhuman

TSL 2 BASIC

Gene NUP54, Length 1,563 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-217ENST00000514987 BIDP55957 195 aa13.28□□□□□ -0.28
NUP54-217ENST00000514987 FOXL2P58012 376 aa13.28□□□□□ -0.28
NUP54-217ENST00000514987 GALK2Q01415 458 aa13.28□□□□□ -0.28
NUP54-217ENST00000514987 MYBPHQ13203 477 aa13.28□□□□□ -0.28
NUP54-217ENST00000514987 CAMK2DQ13557 499 aa13.28□□□□□ -0.28
NUP54-217ENST00000514987 TRA2AQ13595 282 aaKnown RBP eCLIP13.28□□□□□ -0.28
NUP54-217ENST00000514987 ZNF239Q16600 458 aaKnown RBP13.28□□□□□ -0.28
NUP54-217ENST00000514987 PCGF3Q3KNV8 242 aa13.28□□□□□ -0.28
NUP54-217ENST00000514987 TMEM255AQ5JRV8 349 aa13.28□□□□□ -0.28
NUP54-217ENST00000514987 C1orf100Q5SVJ3 147 aa13.28□□□□□ -0.28
NUP54-217ENST00000514987 SLC25A25Q6KCM7 469 aa13.28□□□□□ -0.28
NUP54-217ENST00000514987 TMEM81Q6P7N7 255 aa13.28□□□□□ -0.28
NUP54-217ENST00000514987 LRFN4Q6PJG9 635 aa13.28□□□□□ -0.28
NUP54-217ENST00000514987 FAM198BQ6UWH4 519 aa13.28□□□□□ -0.28
NUP54-217ENST00000514987 MEIOBQ8N635 442 aa13.28□□□□□ -0.28
NUP54-217ENST00000514987 BEST4Q8NFU0 473 aa13.28□□□□□ -0.28
NUP54-217ENST00000514987 OR2M3Q8NG83 312 aa13.28□□□□□ -0.28
NUP54-217ENST00000514987 EDAQ92838 391 aa13.28□□□□□ -0.28
NUP54-217ENST00000514987 SNAPC3Q92966 411 aa13.28□□□□□ -0.28
NUP54-217ENST00000514987 SPACA9Q96E40 222 aaPredicted RBP13.28□□□□□ -0.28
NUP54-217ENST00000514987 ATG5Q9H1Y0 275 aa13.28□□□□□ -0.28
NUP54-217ENST00000514987 TAS2R4Q9NYW5 299 aa13.28□□□□□ -0.28
NUP54-217ENST00000514987 TNRC6BQ9UPQ9 1833 aaKnown RBP13.27□□□□□ -0.28
NUP54-217ENST00000514987 TMEM272A0A1B0GTI8 110 aa13.27□□□□□ -0.29
NUP54-217ENST00000514987 LOC102725191A0A1B0GVB3 256 aa13.27□□□□□ -0.29
NUP54-217ENST00000514987 LOC107986453A0A1B0GWG9 222 aa13.27□□□□□ -0.29
NUP54-217ENST00000514987 LOC390937A0A1W2PQ73 354 aa13.27□□□□□ -0.29
NUP54-217ENST00000514987 A6NL46 340 aa13.27□□□□□ -0.29
NUP54-217ENST00000514987 IGHG1P01857 330 aa13.27□□□□□ -0.29
NUP54-217ENST00000514987 HPXP02790 462 aa13.27□□□□□ -0.29
NUP54-217ENST00000514987 RAB6AP20340 208 aa13.27□□□□□ -0.29
NUP54-217ENST00000514987 LAP3P28838 519 aa13.27□□□□□ -0.29
NUP54-217ENST00000514987 HTR2BP41595 481 aa13.27□□□□□ -0.29
NUP54-217ENST00000514987 SNRPD2P62316 118 aaKnown RBP13.27□□□□□ -0.29
NUP54-217ENST00000514987 FMODQ06828 376 aa13.27□□□□□ -0.29
NUP54-217ENST00000514987 LINC00303Q3SY05 128 aa13.27□□□□□ -0.29
NUP54-217ENST00000514987 PHF19Q5T6S3 580 aa13.27□□□□□ -0.29
NUP54-217ENST00000514987 ZNF626Q68DY1 528 aa13.27□□□□□ -0.29
NUP54-217ENST00000514987 NHLRC1Q6VVB1 395 aa13.27□□□□□ -0.29
NUP54-217ENST00000514987 ADGRE4PQ86SQ3 457 aa13.27□□□□□ -0.29
NUP54-217ENST00000514987 CDH26Q8IXH8 852 aa13.27□□□□□ -0.29
NUP54-217ENST00000514987 OR10G3Q8NGC4 313 aa13.27□□□□□ -0.29
NUP54-217ENST00000514987 ELP5Q8TE02 316 aa13.27□□□□□ -0.29
NUP54-217ENST00000514987 NPAS1Q99742 590 aa13.27□□□□□ -0.29
NUP54-217ENST00000514987 MRPL13Q9BYD1 178 aaKnown RBP13.27□□□□□ -0.29
NUP54-217ENST00000514987 C1orf198Q9H425 327 aa13.27□□□□□ -0.29
NUP54-217ENST00000514987 MOB1AQ9H8S9 216 aa13.27□□□□□ -0.29
NUP54-217ENST00000514987 FLVCR2Q9UPI3 526 aa13.27□□□□□ -0.29
NUP54-217ENST00000514987 HDGFL3Q9Y3E1 203 aa13.27□□□□□ -0.29
NUP54-217ENST00000514987 CACNA1EQ15878 2313 aa13.26□□□□□ -0.29
NUP54-217ENST00000514987 UBE2QL1A1L167 161 aa13.26□□□□□ -0.29
NUP54-217ENST00000514987 DKK1O94907 266 aa13.26□□□□□ -0.29
NUP54-217ENST00000514987 KLK3P07288 261 aaPredicted RBP13.26□□□□□ -0.29
NUP54-217ENST00000514987 GIPP09681 153 aaPredicted RBP13.26□□□□□ -0.29
NUP54-217ENST00000514987 NR2C1P13056 603 aa13.26□□□□□ -0.29
NUP54-217ENST00000514987 EFNB2P52799 333 aa13.26□□□□□ -0.29
NUP54-217ENST00000514987 CLRN1P58418 232 aa13.26□□□□□ -0.29
NUP54-217ENST00000514987 RAP2BP61225 183 aa13.26□□□□□ -0.29
NUP54-217ENST00000514987 GLYATL3Q5SZD4 288 aa13.26□□□□□ -0.29
NUP54-217ENST00000514987 ASPHD2Q6ICH7 369 aa13.26□□□□□ -0.29
NUP54-217ENST00000514987 RAB12Q6IQ22 244 aa13.26□□□□□ -0.29
NUP54-217ENST00000514987 MDGA2Q7Z553 956 aa13.26□□□□□ -0.29
NUP54-217ENST00000514987 FADS6Q8N9I5 356 aa13.26□□□□□ -0.29
NUP54-217ENST00000514987 NOXO1Q8NFA2 376 aa13.26□□□□□ -0.29
NUP54-217ENST00000514987 OR4K17Q8NGC6 315 aa13.26□□□□□ -0.29
NUP54-217ENST00000514987 OR6N1Q8NGY5 312 aa13.26□□□□□ -0.29
NUP54-217ENST00000514987 POC1BQ8TC44 478 aa13.26□□□□□ -0.29
NUP54-217ENST00000514987 IFI44Q8TCB0 444 aa13.26□□□□□ -0.29
NUP54-217ENST00000514987 GPX8Q8TED1 209 aa13.26□□□□□ -0.29
NUP54-217ENST00000514987 C11orf40Q8WZ69 217 aa13.26□□□□□ -0.29
NUP54-217ENST00000514987 PPP1R14AQ96A00 147 aa13.26□□□□□ -0.29
NUP54-217ENST00000514987 ZBTB8AQ96BR9 441 aa13.26□□□□□ -0.29
NUP54-217ENST00000514987 OXGR1Q96P68 337 aa13.26□□□□□ -0.29
NUP54-217ENST00000514987 SORCS2Q96PQ0 1159 aa13.26□□□□□ -0.29
NUP54-217ENST00000514987 RASL10BQ96S79 203 aa13.26□□□□□ -0.29
NUP54-217ENST00000514987 MED29Q9NX70 200 aa13.26□□□□□ -0.29
NUP54-217ENST00000514987 B3GNT2Q9NY97 397 aa13.26□□□□□ -0.29
NUP54-217ENST00000514987 UPB1Q9UBR1 384 aa13.26□□□□□ -0.29
NUP54-217ENST00000514987 CYB5R1Q9UHQ9 305 aa13.26□□□□□ -0.29
NUP54-217ENST00000514987 H3BML4 177 aa13.25□□□□□ -0.29
NUP54-217ENST00000514987 H3BSH0 61 aa13.25□□□□□ -0.29
NUP54-217ENST00000514987 EFNA2O43921 213 aa13.25□□□□□ -0.29
NUP54-217ENST00000514987 LPLP06858 475 aa13.25□□□□□ -0.29
NUP54-217ENST00000514987 GTF2F2P13984 249 aa13.25□□□□□ -0.29
NUP54-217ENST00000514987 RAD52P43351 418 aa13.25□□□□□ -0.29
NUP54-217ENST00000514987 PER3P56645 1201 aa13.25□□□□□ -0.29
NUP54-217ENST00000514987 TAS2R19P59542 299 aa13.25□□□□□ -0.29
NUP54-217ENST00000514987 ZP1P60852 638 aa13.25□□□□□ -0.29
NUP54-217ENST00000514987 PLA2G7Q13093 441 aa13.25□□□□□ -0.29
NUP54-217ENST00000514987 IKZF1Q13422 519 aa13.25□□□□□ -0.29
NUP54-217ENST00000514987 EXT1Q16394 746 aa13.25□□□□□ -0.29
NUP54-217ENST00000514987 C6orf183Q5T699 404 aa13.25□□□□□ -0.29
NUP54-217ENST00000514987 ZBTB37Q5TC79 503 aa13.25□□□□□ -0.29
NUP54-217ENST00000514987 OTPQ5XKR4 325 aa13.25□□□□□ -0.29
NUP54-217ENST00000514987 OPN5Q6U736 354 aa13.25□□□□□ -0.29
NUP54-217ENST00000514987 NLRC3Q7RTR2 1065 aa13.25□□□□□ -0.29
NUP54-217ENST00000514987 LINC00346Q8IVM7 164 aa13.25□□□□□ -0.29
NUP54-217ENST00000514987 ELMOD2Q8IZ81 293 aa13.25□□□□□ -0.29
NUP54-217ENST00000514987 BMPERQ8N8U9 685 aa13.25□□□□□ -0.29
NUP54-217ENST00000514987 TMEM229BQ8NBD8 167 aa13.25□□□□□ -0.29
Retrieved 100 of 20,778 RNA–protein pairs in 41.1 ms