RNA–Protein interactions for RNA: ENST00000514313.1

NUP54-215, Transcript of nucleoporin 54, humanhuman

TSL 2

Gene NUP54, Length 537 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-215ENST00000514313 RAB3DO95716 219 aa4.97□□□□□ -1.61
NUP54-215ENST00000514313 OXTP01178 125 aa4.97□□□□□ -1.61
NUP54-215ENST00000514313 FABP3P05413 133 aa4.97□□□□□ -1.61
NUP54-215ENST00000514313 PNMA6AP0CW24 399 aaPredicted RBP4.97□□□□□ -1.61
NUP54-215ENST00000514313 CSNK2A2P19784 350 aaPredicted RBP4.97□□□□□ -1.61
NUP54-215ENST00000514313 F2RP25116 425 aa4.97□□□□□ -1.61
NUP54-215ENST00000514313 U2AF2P26368 475 aaKnown RBP eCLIP4.97□□□□□ -1.61
NUP54-215ENST00000514313 CXCL5P42830 114 aa4.97□□□□□ -1.61
NUP54-215ENST00000514313 ZNF138P52744 262 aa4.97□□□□□ -1.61
NUP54-215ENST00000514313 RSPO1Q2MKA7 263 aaPredicted RBP4.97□□□□□ -1.61
NUP54-215ENST00000514313 PIGGQ5H8A4 983 aa4.97□□□□□ -1.61
NUP54-215ENST00000514313 GPR107Q5VW38 600 aa4.97□□□□□ -1.61
NUP54-215ENST00000514313 H3F3CQ6NXT2 135 aa4.97□□□□□ -1.61
NUP54-215ENST00000514313 C12orf54Q6X4T0 127 aa4.97□□□□□ -1.61
NUP54-215ENST00000514313 ZNF547Q8IVP9 402 aa4.97□□□□□ -1.61
NUP54-215ENST00000514313 Q8N9W7 124 aa4.97□□□□□ -1.61
NUP54-215ENST00000514313 ELSPBP1Q96BH3 223 aa4.97□□□□□ -1.61
NUP54-215ENST00000514313 APH1AQ96BI3 265 aa4.97□□□□□ -1.61
NUP54-215ENST00000514313 WFIKKN1Q96NZ8 548 aa4.97□□□□□ -1.61
NUP54-215ENST00000514313 CSPG4P5Q96PW8 444 aa4.97□□□□□ -1.61
NUP54-215ENST00000514313 PRSS16Q9NQE7 514 aa4.97□□□□□ -1.61
NUP54-215ENST00000514313 GTF3C1Q12789 2109 aa4.97□□□□□ -1.61
NUP54-215ENST00000514313 CROCCQ5TZA2 2017 aa4.97□□□□□ -1.61
NUP54-215ENST00000514313 TP53BP1Q12888 1972 aaPredicted RBP4.96□□□□□ -1.61
NUP54-215ENST00000514313 ADAMTS9Q9P2N4 1935 aa4.96□□□□□ -1.62
NUP54-215ENST00000514313 KLLNB2CW77 178 aa4.96□□□□□ -1.62
NUP54-215ENST00000514313 ZNF33AQ06730 810 aa4.96□□□□□ -1.62
NUP54-215ENST00000514313 ABHD13Q7L211 337 aa4.96□□□□□ -1.62
NUP54-215ENST00000514313 MRPL21Q7Z2W9 205 aaKnown RBP4.96□□□□□ -1.62
NUP54-215ENST00000514313 OR51G1Q8NGK1 321 aa4.96□□□□□ -1.62
NUP54-215ENST00000514313 BLOC1S5Q8TDH9 187 aa4.96□□□□□ -1.62
NUP54-215ENST00000514313 APH1BQ8WW43 257 aa4.96□□□□□ -1.62
NUP54-215ENST00000514313 TOP1MTQ969P6 601 aa4.96□□□□□ -1.62
NUP54-215ENST00000514313 TMEM230Q96A57 120 aa4.96□□□□□ -1.62
NUP54-215ENST00000514313 ZC4H2Q9NQZ6 224 aa4.96□□□□□ -1.62
NUP54-215ENST00000514313 RPS6KB2Q9UBS0 482 aa4.96□□□□□ -1.62
NUP54-215ENST00000514313 CACNG2Q9Y698 323 aa4.96□□□□□ -1.62
NUP54-215ENST00000514313 WDR62O43379 1518 aa4.96□□□□□ -1.62
NUP54-215ENST00000514313 PLPP1O14494 284 aa4.95□□□□□ -1.62
NUP54-215ENST00000514313 SS18L1O75177 396 aaPredicted RBP4.95□□□□□ -1.62
NUP54-215ENST00000514313 TGM6O95932 706 aa4.95□□□□□ -1.62
NUP54-215ENST00000514313 MBP02144 154 aa4.95□□□□□ -1.62
NUP54-215ENST00000514313 NR2C1P13056 603 aa4.95□□□□□ -1.62
NUP54-215ENST00000514313 GPR1P46091 355 aa4.95□□□□□ -1.62
NUP54-215ENST00000514313 LHX2P50458 406 aa4.95□□□□□ -1.62
NUP54-215ENST00000514313 HMGCS1Q01581 520 aa4.95□□□□□ -1.62
NUP54-215ENST00000514313 POU2AF1Q16633 256 aa4.95□□□□□ -1.62
NUP54-215ENST00000514313 TMEM255AQ5JRV8 349 aa4.95□□□□□ -1.62
NUP54-215ENST00000514313 TPTE2P1Q5T6R2 138 aa4.95□□□□□ -1.62
NUP54-215ENST00000514313 MBOAT2Q6ZWT7 520 aa4.95□□□□□ -1.62
NUP54-215ENST00000514313 C6orf120Q7Z4R8 191 aa4.95□□□□□ -1.62
NUP54-215ENST00000514313 ZNF429Q86V71 674 aa4.95□□□□□ -1.62
NUP54-215ENST00000514313 TRAM1L1Q8N609 369 aa4.95□□□□□ -1.62
NUP54-215ENST00000514313 OR5T3Q8NGG3 340 aa4.95□□□□□ -1.62
NUP54-215ENST00000514313 OR51F2Q8NH61 342 aa4.95□□□□□ -1.62
NUP54-215ENST00000514313 OR51E1Q8TCB6 317 aa4.95□□□□□ -1.62
NUP54-215ENST00000514313 PIH1D2Q8WWB5 315 aa4.95□□□□□ -1.62
NUP54-215ENST00000514313 CREB3L1Q96BA8 519 aa4.95□□□□□ -1.62
NUP54-215ENST00000514313 FOXC2Q99958 501 aa4.95□□□□□ -1.62
NUP54-215ENST00000514313 MRM3Q9HC36 420 aaKnown RBP4.95□□□□□ -1.62
NUP54-215ENST00000514313 DYRK4Q9NR20 520 aa4.95□□□□□ -1.62
NUP54-215ENST00000514313 ADAM22Q9P0K1 906 aa4.95□□□□□ -1.62
NUP54-215ENST00000514313 CD84Q9UIB8 345 aa4.95□□□□□ -1.62
NUP54-215ENST00000514313 NEU3Q9UQ49 428 aa4.95□□□□□ -1.62
NUP54-215ENST00000514313 PSG8Q9UQ74 426 aa4.95□□□□□ -1.62
NUP54-215ENST00000514313 ZNF646O15015 1829 aaPredicted RBP4.95□□□□□ -1.62
NUP54-215ENST00000514313 COL22A1Q8NFW1 1626 aaPredicted RBP4.94□□□□□ -1.62
NUP54-215ENST00000514313 A0A1W2PPV4 95 aa4.94□□□□□ -1.62
NUP54-215ENST00000514313 LAD1O00515 517 aa4.94□□□□□ -1.62
NUP54-215ENST00000514313 FARS2O95363 451 aaKnown RBP4.94□□□□□ -1.62
NUP54-215ENST00000514313 SNAI1O95863 264 aaPredicted RBP4.94□□□□□ -1.62
NUP54-215ENST00000514313 CSTAP01040 98 aa4.94□□□□□ -1.62
NUP54-215ENST00000514313 EIF4EP06730 217 aaKnown RBP4.94□□□□□ -1.62
NUP54-215ENST00000514313 RAB4AP20338 218 aa4.94□□□□□ -1.62
NUP54-215ENST00000514313 CEACAM3P40198 252 aa4.94□□□□□ -1.62
NUP54-215ENST00000514313 PSMD4P55036 377 aaKnown RBP4.94□□□□□ -1.62
NUP54-215ENST00000514313 CKAP4Q07065 602 aaKnown RBP4.94□□□□□ -1.62
NUP54-215ENST00000514313 TCP10Q12799 353 aa4.94□□□□□ -1.62
NUP54-215ENST00000514313 ULK3Q6PHR2 472 aa4.94□□□□□ -1.62
NUP54-215ENST00000514313 NCCRP1Q6ZVX7 275 aaPredicted RBP4.94□□□□□ -1.62
NUP54-215ENST00000514313 MYOCDQ8IZQ8 938 aa4.94□□□□□ -1.62
NUP54-215ENST00000514313 PDCL2Q8N4E4 241 aa4.94□□□□□ -1.62
NUP54-215ENST00000514313 OR52E2Q8NGJ4 325 aa4.94□□□□□ -1.62
NUP54-215ENST00000514313 TAAR1Q96RJ0 339 aa4.94□□□□□ -1.62
NUP54-215ENST00000514313 DDX19BQ9UMR2 479 aa4.94□□□□□ -1.62
NUP54-215ENST00000514313 MAP3K15Q6ZN16 1313 aa4.94□□□□□ -1.62
NUP54-215ENST00000514313 TDRD6O60522 2096 aaKnown RBP4.93□□□□□ -1.62
NUP54-215ENST00000514313 IGHV3-64DA0A0J9YX35 117 aa4.93□□□□□ -1.62
NUP54-215ENST00000514313 LOC100653049A0A140TA62 436 aa4.93□□□□□ -1.62
NUP54-215ENST00000514313 A0A1B0GUA9 196 aa4.93□□□□□ -1.62
NUP54-215ENST00000514313 TRIM49D1C9J1S8 452 aa4.93□□□□□ -1.62
NUP54-215ENST00000514313 KRT34O76011 436 aa4.93□□□□□ -1.62
NUP54-215ENST00000514313 RAB3BP20337 219 aa4.93□□□□□ -1.62
NUP54-215ENST00000514313 GABRR2P28476 465 aa4.93□□□□□ -1.62
NUP54-215ENST00000514313 CEACAM6P40199 344 aa4.93□□□□□ -1.62
NUP54-215ENST00000514313 CDKN2BP42772 138 aa4.93□□□□□ -1.62
NUP54-215ENST00000514313 RPS10P46783 165 aaKnown RBP4.93□□□□□ -1.62
NUP54-215ENST00000514313 CYB561P49447 251 aa4.93□□□□□ -1.62
NUP54-215ENST00000514313 SERPINB8P50452 374 aa4.93□□□□□ -1.62
NUP54-215ENST00000514313 ZNF136P52737 540 aa4.93□□□□□ -1.62
Retrieved 100 of 20,778 RNA–protein pairs in 52.9 ms