RNA–Protein interactions for RNA: ENST00000514096.5

LIMCH1-219, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 1 (best) BASIC

Gene LIMCH1, Length 3,543 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-219ENST00000514096 SCN3BQ9NY72 215 aa7.07□□□□□ -1.28
LIMCH1-219ENST00000514096 CHRNA9Q9UGM1 479 aa7.07□□□□□ -1.28
LIMCH1-219ENST00000514096 RIMS3Q9UJD0 308 aa7.07□□□□□ -1.28
LIMCH1-219ENST00000514096 MRTO4Q9UKD2 239 aaKnown RBP7.07□□□□□ -1.28
LIMCH1-219ENST00000514096 GAB2Q9UQC2 676 aa7.07□□□□□ -1.28
LIMCH1-219ENST00000514096 GRIP1Q9Y3R0 1128 aa7.07□□□□□ -1.28
LIMCH1-219ENST00000514096 PCDHB14Q9Y5E9 798 aa7.07□□□□□ -1.28
LIMCH1-219ENST00000514096 SERTM2A0A1B0GWG4 89 aa7.07□□□□□ -1.28
LIMCH1-219ENST00000514096 OR2M5A3KFT3 312 aa7.07□□□□□ -1.28
LIMCH1-219ENST00000514096 SLC16A6O15403 523 aa7.07□□□□□ -1.28
LIMCH1-219ENST00000514096 SEC14L2O76054 403 aa7.07□□□□□ -1.28
LIMCH1-219ENST00000514096 ZNF682O95780 498 aa7.07□□□□□ -1.28
LIMCH1-219ENST00000514096 ZNF26P17031 533 aaPredicted RBP7.07□□□□□ -1.28
LIMCH1-219ENST00000514096 ZP3P21754 424 aa7.07□□□□□ -1.28
LIMCH1-219ENST00000514096 SOX18P35713 384 aa7.07□□□□□ -1.28
LIMCH1-219ENST00000514096 UGT2B10P36537 528 aa7.07□□□□□ -1.28
LIMCH1-219ENST00000514096 MXD1Q05195 221 aa7.07□□□□□ -1.28
LIMCH1-219ENST00000514096 CRYZQ08257 329 aaKnown RBP7.07□□□□□ -1.28
LIMCH1-219ENST00000514096 ASAH1Q13510 395 aa7.07□□□□□ -1.28
LIMCH1-219ENST00000514096 ZNF791Q3KP31 576 aaPredicted RBP7.07□□□□□ -1.28
LIMCH1-219ENST00000514096 IGFL3Q6UXB1 125 aa7.07□□□□□ -1.28
LIMCH1-219ENST00000514096 HIPK1Q86Z02 1210 aa7.07□□□□□ -1.28
LIMCH1-219ENST00000514096 NANOGP1Q8N7R0 232 aa7.07□□□□□ -1.28
LIMCH1-219ENST00000514096 OR13F1Q8NGS4 319 aa7.07□□□□□ -1.28
LIMCH1-219ENST00000514096 NUBPLQ8TB37 319 aa7.07□□□□□ -1.28
LIMCH1-219ENST00000514096 CANT1Q8WVQ1 401 aa7.07□□□□□ -1.28
LIMCH1-219ENST00000514096 OR5P2Q8WZ92 322 aa7.07□□□□□ -1.28
LIMCH1-219ENST00000514096 WNT2BQ93097 391 aa7.07□□□□□ -1.28
LIMCH1-219ENST00000514096 Q96MT0 163 aa7.07□□□□□ -1.28
LIMCH1-219ENST00000514096 PHB2Q99623 299 aa7.07□□□□□ -1.28
LIMCH1-219ENST00000514096 TIMP4Q99727 224 aa7.07□□□□□ -1.28
LIMCH1-219ENST00000514096 ACTRT3Q9BYD9 372 aa7.07□□□□□ -1.28
LIMCH1-219ENST00000514096 HDHD2Q9H0R4 259 aa7.07□□□□□ -1.28
LIMCH1-219ENST00000514096 C19orf12Q9NSK7 152 aa7.07□□□□□ -1.28
LIMCH1-219ENST00000514096 RHCGQ9UBD6 479 aa7.07□□□□□ -1.28
LIMCH1-219ENST00000514096 RNF6Q9Y252 685 aa7.07□□□□□ -1.28
LIMCH1-219ENST00000514096 PHF3Q92576 2039 aaKnown RBP7.06□□□□□ -1.28
LIMCH1-219ENST00000514096 LINC00862A6NCI5 91 aa7.06□□□□□ -1.28
LIMCH1-219ENST00000514096 AGAP5A6NIR3 686 aa7.06□□□□□ -1.28
LIMCH1-219ENST00000514096 LRRC3CA6NJW4 275 aa7.06□□□□□ -1.28
LIMCH1-219ENST00000514096 NPSP0C0P6 89 aa7.06□□□□□ -1.28
LIMCH1-219ENST00000514096 RPS2P15880 293 aaKnown RBP7.06□□□□□ -1.28
LIMCH1-219ENST00000514096 NCK1P16333 377 aa7.06□□□□□ -1.28
LIMCH1-219ENST00000514096 SHC1P29353 583 aa7.06□□□□□ -1.28
LIMCH1-219ENST00000514096 GRK5P34947 590 aa7.06□□□□□ -1.28
LIMCH1-219ENST00000514096 MAGEB1P43366 347 aa7.06□□□□□ -1.28
LIMCH1-219ENST00000514096 FOXF1Q12946 379 aa7.06□□□□□ -1.28
LIMCH1-219ENST00000514096 RBM39Q14498 530 aaKnown RBP7.06□□□□□ -1.28
LIMCH1-219ENST00000514096 XKR7Q5GH72 579 aa7.06□□□□□ -1.28
LIMCH1-219ENST00000514096 CARD17Q5XLA6 110 aa7.06□□□□□ -1.28
LIMCH1-219ENST00000514096 SLC27A4Q6P1M0 643 aa7.06□□□□□ -1.28
LIMCH1-219ENST00000514096 RNF165Q6ZSG1 346 aa7.06□□□□□ -1.28
LIMCH1-219ENST00000514096 Q71RC1 249 aaPredicted RBP7.06□□□□□ -1.28
LIMCH1-219ENST00000514096 RDH10Q8IZV5 341 aa7.06□□□□□ -1.28
LIMCH1-219ENST00000514096 OR6K3Q8NGY3 331 aa7.06□□□□□ -1.28
LIMCH1-219ENST00000514096 UGT2B28Q9BY64 529 aa7.06□□□□□ -1.28
LIMCH1-219ENST00000514096 C1orf21Q9H246 121 aa7.06□□□□□ -1.28
LIMCH1-219ENST00000514096 NEUROD4Q9HD90 331 aa7.06□□□□□ -1.28
LIMCH1-219ENST00000514096 SIRT3Q9NTG7 399 aaPredicted RBP7.06□□□□□ -1.28
LIMCH1-219ENST00000514096 AIG1Q9NVV5 245 aa7.06□□□□□ -1.28
LIMCH1-219ENST00000514096 FLNAP21333 2647 aaKnown RBP7.06□□□□□ -1.28
LIMCH1-219ENST00000514096 PLSCR5A0PG75 271 aa7.06□□□□□ -1.28
LIMCH1-219ENST00000514096 A8MXE2 369 aa7.06□□□□□ -1.28
LIMCH1-219ENST00000514096 LRRN3E7EW58 273 aa7.06□□□□□ -1.28
LIMCH1-219ENST00000514096 CLPSP04118 112 aa7.06□□□□□ -1.28
LIMCH1-219ENST00000514096 RRASP10301 218 aa7.06□□□□□ -1.28
LIMCH1-219ENST00000514096 DNASE1P24855 282 aa7.06□□□□□ -1.28
LIMCH1-219ENST00000514096 OTPQ5XKR4 325 aa7.06□□□□□ -1.28
LIMCH1-219ENST00000514096 GPALPP1Q8IXQ4 340 aa7.06□□□□□ -1.28
LIMCH1-219ENST00000514096 C8orf59Q8N0T1 100 aaPredicted RBP7.06□□□□□ -1.28
LIMCH1-219ENST00000514096 C10orf111Q8N326 155 aa7.06□□□□□ -1.28
LIMCH1-219ENST00000514096 UBAC2Q8NBM4 344 aa7.06□□□□□ -1.28
LIMCH1-219ENST00000514096 ABHD3Q8WU67 409 aa7.06□□□□□ -1.28
LIMCH1-219ENST00000514096 NUDT11Q96G61 164 aa7.06□□□□□ -1.28
LIMCH1-219ENST00000514096 CXorf58Q96LI9 332 aa7.06□□□□□ -1.28
LIMCH1-219ENST00000514096 KCNJ16Q9NPI9 418 aa7.06□□□□□ -1.28
LIMCH1-219ENST00000514096 TREM2Q9NZC2 230 aa7.06□□□□□ -1.28
LIMCH1-219ENST00000514096 APCP25054 2843 aa7.06□□□□□ -1.28
LIMCH1-219ENST00000514096 MED12LQ86YW9 2145 aa7.06□□□□□ -1.28
LIMCH1-219ENST00000514096 A0A1B0GW55 424 aa7.06□□□□□ -1.28
LIMCH1-219ENST00000514096 TMEM210A6NLX4 147 aa7.06□□□□□ -1.28
LIMCH1-219ENST00000514096 A6NNC1 897 aa7.06□□□□□ -1.28
LIMCH1-219ENST00000514096 M0R036 132 aa7.06□□□□□ -1.28
LIMCH1-219ENST00000514096 MYL12BO14950 172 aa7.06□□□□□ -1.28
LIMCH1-219ENST00000514096 KRT33AO76009 404 aa7.06□□□□□ -1.28
LIMCH1-219ENST00000514096 FBXO45P0C2W1 286 aa7.06□□□□□ -1.28
LIMCH1-219ENST00000514096 DUX4L2P0CJ85 424 aa7.06□□□□□ -1.28
LIMCH1-219ENST00000514096 DUX4L3P0CJ86 424 aa7.06□□□□□ -1.28
LIMCH1-219ENST00000514096 DUX4L4P0CJ87 422 aa7.06□□□□□ -1.28
LIMCH1-219ENST00000514096 DUX4L5P0CJ88 424 aa7.06□□□□□ -1.28
LIMCH1-219ENST00000514096 DUX4L6P0CJ89 424 aa7.06□□□□□ -1.28
LIMCH1-219ENST00000514096 DUX4L7P0CJ90 424 aa7.06□□□□□ -1.28
LIMCH1-219ENST00000514096 MYL12AP19105 171 aa7.06□□□□□ -1.28
LIMCH1-219ENST00000514096 CTBP2P56545 445 aa7.06□□□□□ -1.28
LIMCH1-219ENST00000514096 NTRK2Q16620 822 aa7.06□□□□□ -1.28
LIMCH1-219ENST00000514096 RNLSQ5VYX0 342 aa7.06□□□□□ -1.28
LIMCH1-219ENST00000514096 SPNS3Q6ZMD2 512 aa7.06□□□□□ -1.28
LIMCH1-219ENST00000514096 TMPRSS11AQ6ZMR5 421 aa7.06□□□□□ -1.28
LIMCH1-219ENST00000514096 DEF8Q6ZN54 512 aa7.06□□□□□ -1.28
LIMCH1-219ENST00000514096 REC114Q7Z4M0 266 aa7.06□□□□□ -1.28
Retrieved 100 of 20,778 RNA–protein pairs in 30 ms