RNA–Protein interactions for RNA: ENST00000513643.5

RNF4-221, Transcript of ring finger protein 4, humanhuman

TSL 3

Gene RNF4, Length 516 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RNF4-221ENST00000513643 OR4K13Q8NH42 304 aa8.32□□□□□ -1.08
RNF4-221ENST00000513643 ZNRF4Q8WWF5 429 aa8.32□□□□□ -1.08
RNF4-221ENST00000513643 NEU4Q8WWR8 484 aaPredicted RBP8.32□□□□□ -1.08
RNF4-221ENST00000513643 UTP4Q969X6 686 aaKnown RBP8.32□□□□□ -1.08
RNF4-221ENST00000513643 LRGUKQ96M69 825 aa8.32□□□□□ -1.08
RNF4-221ENST00000513643 FEVQ99581 238 aa8.32□□□□□ -1.08
RNF4-221ENST00000513643 NIPSNAP1Q9BPW8 284 aa8.32□□□□□ -1.08
RNF4-221ENST00000513643 RHNO1Q9BSD3 238 aa8.32□□□□□ -1.08
RNF4-221ENST00000513643 IFT27Q9BW83 186 aa8.32□□□□□ -1.08
RNF4-221ENST00000513643 RBM4Q9BWF3 364 aaKnown RBP8.32□□□□□ -1.08
RNF4-221ENST00000513643 BCL2L14Q9BZR8 327 aa8.32□□□□□ -1.08
RNF4-221ENST00000513643 LRMDAQ9H2I8 198 aa8.32□□□□□ -1.08
RNF4-221ENST00000513643 MMADHCQ9H3L0 296 aaPredicted RBP8.32□□□□□ -1.08
RNF4-221ENST00000513643 MYOZ1Q9NP98 299 aaPredicted RBP8.32□□□□□ -1.08
RNF4-221ENST00000513643 SAMHD1Q9Y3Z3 626 aaKnown RBP8.32□□□□□ -1.08
RNF4-221ENST00000513643 LHFPL6Q9Y693 200 aa8.32□□□□□ -1.08
RNF4-221ENST00000513643 U3KQV3 271 aa8.32□□□□□ -1.08
RNF4-221ENST00000513643 CR1P17927 2039 aa8.31□□□□□ -1.08
RNF4-221ENST00000513643 ATRQ13535 2644 aa8.31□□□□□ -1.08
RNF4-221ENST00000513643 A0A1W2PPL8 197 aa8.31□□□□□ -1.08
RNF4-221ENST00000513643 LOC390937A0A1W2PQ73 354 aa8.31□□□□□ -1.08
RNF4-221ENST00000513643 C5orf49A4QMS7 147 aa8.31□□□□□ -1.08
RNF4-221ENST00000513643 H3BSA7 217 aa8.31□□□□□ -1.08
RNF4-221ENST00000513643 FKBP6O75344 327 aa8.31□□□□□ -1.08
RNF4-221ENST00000513643 GPANK1O95872 356 aa8.31□□□□□ -1.08
RNF4-221ENST00000513643 CLPTM1O96005 669 aa8.31□□□□□ -1.08
RNF4-221ENST00000513643 NGFP01138 241 aa8.31□□□□□ -1.08
RNF4-221ENST00000513643 ADH4P08319 380 aa8.31□□□□□ -1.08
RNF4-221ENST00000513643 ADRA2AP08913 450 aa8.31□□□□□ -1.08
RNF4-221ENST00000513643 FAM157BP0CG42 384 aa8.31□□□□□ -1.08
RNF4-221ENST00000513643 SLC25A16P16260 332 aa8.31□□□□□ -1.08
RNF4-221ENST00000513643 TUBG1P23258 451 aa8.31□□□□□ -1.08
RNF4-221ENST00000513643 APLNRP35414 380 aa8.31□□□□□ -1.08
RNF4-221ENST00000513643 GUCA1AP43080 201 aaPredicted RBP8.31□□□□□ -1.08
RNF4-221ENST00000513643 MMP15P51511 669 aa8.31□□□□□ -1.08
RNF4-221ENST00000513643 MRPS11P82912 194 aaKnown RBP8.31□□□□□ -1.08
RNF4-221ENST00000513643 GALK2Q01415 458 aa8.31□□□□□ -1.08
RNF4-221ENST00000513643 HSF2Q03933 536 aa8.31□□□□□ -1.08
RNF4-221ENST00000513643 SCRN3Q0VDG4 424 aa8.31□□□□□ -1.08
RNF4-221ENST00000513643 RIN1Q13671 783 aa8.31□□□□□ -1.08
RNF4-221ENST00000513643 FLOT2Q14254 428 aa8.31□□□□□ -1.08
RNF4-221ENST00000513643 RGS7BPQ6MZT1 257 aaPredicted RBP8.31□□□□□ -1.08
RNF4-221ENST00000513643 LEG1Q6P5S2 330 aa8.31□□□□□ -1.08
RNF4-221ENST00000513643 CLEC9AQ6UXN8 241 aa8.31□□□□□ -1.08
RNF4-221ENST00000513643 COLCA1Q6ZS62 124 aa8.31□□□□□ -1.08
RNF4-221ENST00000513643 ZNF786Q8N393 782 aa8.31□□□□□ -1.08
RNF4-221ENST00000513643 OR10G2Q8NGC3 310 aa8.31□□□□□ -1.08
RNF4-221ENST00000513643 FAM168AQ92567 244 aa8.31□□□□□ -1.08
RNF4-221ENST00000513643 NRBF2Q96F24 287 aa8.31□□□□□ -1.08
RNF4-221ENST00000513643 C4orf45Q96LM5 186 aa8.31□□□□□ -1.08
RNF4-221ENST00000513643 FOXN4Q96NZ1 517 aa8.31□□□□□ -1.08
RNF4-221ENST00000513643 RAB1BQ9H0U4 201 aa8.31□□□□□ -1.08
RNF4-221ENST00000513643 MS4A5Q9H3V2 200 aa8.31□□□□□ -1.08
RNF4-221ENST00000513643 CDH20Q9HBT6 801 aa8.31□□□□□ -1.08
RNF4-221ENST00000513643 PNRC2Q9NPJ4 139 aaKnown RBP8.31□□□□□ -1.08
RNF4-221ENST00000513643 TUBG2Q9NRH3 451 aa8.31□□□□□ -1.08
RNF4-221ENST00000513643 TBCCD1Q9NVR7 557 aa8.31□□□□□ -1.08
RNF4-221ENST00000513643 MRPL22Q9NWU5 206 aaKnown RBP8.31□□□□□ -1.08
RNF4-221ENST00000513643 NKIRAS2Q9NYR9 191 aa8.31□□□□□ -1.08
RNF4-221ENST00000513643 DNAJB9Q9UBS3 223 aa8.31□□□□□ -1.08
RNF4-221ENST00000513643 CYB5R1Q9UHQ9 305 aa8.31□□□□□ -1.08
RNF4-221ENST00000513643 NDRG4Q9ULP0 352 aaKnown RBP8.31□□□□□ -1.08
RNF4-221ENST00000513643 CHD3Q12873 2000 aaKnown RBP8.3□□□□□ -1.08
RNF4-221ENST00000513643 YLPM1P49750 1951 aaKnown RBP8.3□□□□□ -1.08
RNF4-221ENST00000513643 RER1O15258 196 aa8.3□□□□□ -1.08
RNF4-221ENST00000513643 SGCEO43556 437 aa8.3□□□□□ -1.08
RNF4-221ENST00000513643 STAMBPO95630 424 aa8.3□□□□□ -1.08
RNF4-221ENST00000513643 ALDH3B1P43353 468 aa8.3□□□□□ -1.08
RNF4-221ENST00000513643 NR4A2P43354 598 aa8.3□□□□□ -1.08
RNF4-221ENST00000513643 GDI2P50395 445 aaKnown RBP8.3□□□□□ -1.08
RNF4-221ENST00000513643 RASSF2P50749 326 aa8.3□□□□□ -1.08
RNF4-221ENST00000513643 SLC25A1P53007 311 aa8.3□□□□□ -1.08
RNF4-221ENST00000513643 GLO1Q04760 184 aa8.3□□□□□ -1.08
RNF4-221ENST00000513643 KHDRBS1Q07666 443 aaKnown RBP eCLIP8.3□□□□□ -1.08
RNF4-221ENST00000513643 KRTAP21-3Q3LHN1 58 aa8.3□□□□□ -1.08
RNF4-221ENST00000513643 CLEC12AQ5QGZ9 265 aa8.3□□□□□ -1.08
RNF4-221ENST00000513643 ELFN2Q5R3F8 820 aa8.3□□□□□ -1.08
RNF4-221ENST00000513643 SLC35F1Q5T1Q4 408 aa8.3□□□□□ -1.08
RNF4-221ENST00000513643 LINC01590Q5TEZ4 76 aa8.3□□□□□ -1.08
RNF4-221ENST00000513643 OTPQ5XKR4 325 aa8.3□□□□□ -1.08
RNF4-221ENST00000513643 SLC18B1Q6NT16 456 aa8.3□□□□□ -1.08
RNF4-221ENST00000513643 DNM1P34Q6PK57 102 aa8.3□□□□□ -1.08
RNF4-221ENST00000513643 CLEC2AQ6UVW9 174 aa8.3□□□□□ -1.08
RNF4-221ENST00000513643 RFPL4BQ6ZWI9 263 aa8.3□□□□□ -1.08
RNF4-221ENST00000513643 SLC37A3Q8NCC5 494 aa8.3□□□□□ -1.08
RNF4-221ENST00000513643 OR52E2Q8NGJ4 325 aa8.3□□□□□ -1.08
RNF4-221ENST00000513643 SYNPRQ8TBG9 265 aa8.3□□□□□ -1.08
RNF4-221ENST00000513643 KLF14Q8TD94 323 aaPredicted RBP8.3□□□□□ -1.08
RNF4-221ENST00000513643 GIPC3Q8TF64 312 aa8.3□□□□□ -1.08
RNF4-221ENST00000513643 PTP4A1Q93096 173 aa8.3□□□□□ -1.08
RNF4-221ENST00000513643 SYT3Q9BQG1 590 aa8.3□□□□□ -1.08
RNF4-221ENST00000513643 TSSK6Q9BXA6 273 aa8.3□□□□□ -1.08
RNF4-221ENST00000513643 SRA1Q9HD15 236 aaKnown RBP8.3□□□□□ -1.08
RNF4-221ENST00000513643 RPRD1BQ9NQG5 326 aaKnown RBP8.3□□□□□ -1.08
RNF4-221ENST00000513643 CMC2Q9NRP2 79 aa8.3□□□□□ -1.08
RNF4-221ENST00000513643 ARMC1Q9NVT9 282 aa8.3□□□□□ -1.08
RNF4-221ENST00000513643 ASH2LQ9UBL3 628 aa8.3□□□□□ -1.08
RNF4-221ENST00000513643 BAIAP2Q9UQB8 552 aa8.3□□□□□ -1.08
RNF4-221ENST00000513643 PRPF8Q6P2Q9 2335 aaKnown RBP eCLIP8.3□□□□□ -1.082e-7■■■■■ 29.5
RNF4-221ENST00000513643 C17orf100A8MU93 164 aa8.29□□□□□ -1.08
Retrieved 100 of 20,778 RNA–protein pairs in 329 ms