RNA–Protein interactions for RNA: ENST00000513352.1

NUP54-213, Transcript of nucleoporin 54, humanhuman

TSL 4

Gene NUP54, Length 579 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-213ENST00000513352 BSPH1Q075Z2 132 aa13.02□□□□□ -0.33
NUP54-213ENST00000513352 EIF2B1Q14232 305 aaKnown RBP13.02□□□□□ -0.33
NUP54-213ENST00000513352 MAD2L1BPQ15013 274 aaPredicted RBP13.02□□□□□ -0.33
NUP54-213ENST00000513352 OCLNQ16625 522 aa13.02□□□□□ -0.33
NUP54-213ENST00000513352 ZNF774Q6NX45 483 aa13.02□□□□□ -0.33
NUP54-213ENST00000513352 SEZ6L2Q6UXD5 910 aa13.02□□□□□ -0.33
NUP54-213ENST00000513352 SHFQ7M4L6 423 aa13.02□□□□□ -0.33
NUP54-213ENST00000513352 SYT9Q86SS6 491 aa13.02□□□□□ -0.33
NUP54-213ENST00000513352 ALDH16A1Q8IZ83 802 aa13.02□□□□□ -0.33
NUP54-213ENST00000513352 ACBD4Q8NC06 268 aa13.02□□□□□ -0.33
NUP54-213ENST00000513352 GJC3Q8NFK1 279 aa13.02□□□□□ -0.33
NUP54-213ENST00000513352 OR51G2Q8NGK0 314 aa13.02□□□□□ -0.33
NUP54-213ENST00000513352 RHOXF1Q8NHV9 184 aa13.02□□□□□ -0.33
NUP54-213ENST00000513352 CNIH3Q8TBE1 160 aa13.02□□□□□ -0.33
NUP54-213ENST00000513352 TFAP2CQ92754 450 aa13.02□□□□□ -0.33
NUP54-213ENST00000513352 RADILQ96JH8 1075 aa13.02□□□□□ -0.33
NUP54-213ENST00000513352 Q96MT0 163 aa13.02□□□□□ -0.33
NUP54-213ENST00000513352 WNT5BQ9H1J7 359 aa13.02□□□□□ -0.33
NUP54-213ENST00000513352 RASSF4Q9H2L5 321 aa13.02□□□□□ -0.33
NUP54-213ENST00000513352 WARS2Q9UGM6 360 aaKnown RBP13.02□□□□□ -0.33
NUP54-213ENST00000513352 GDF2Q9UK05 429 aaPredicted RBP13.02□□□□□ -0.33
NUP54-213ENST00000513352 PTPN13Q12923 2485 aa13.02□□□□□ -0.33
NUP54-213ENST00000513352 DPRXA6NFQ7 191 aa13.01□□□□□ -0.33
NUP54-213ENST00000513352 ABCD4O14678 606 aa13.01□□□□□ -0.33
NUP54-213ENST00000513352 IGKV3-15P01624 115 aa13.01□□□□□ -0.33
NUP54-213ENST00000513352 SERPINA5P05154 406 aa13.01□□□□□ -0.33
NUP54-213ENST00000513352 CD3EP07766 207 aa13.01□□□□□ -0.33
NUP54-213ENST00000513352 PSKH1P11801 424 aa13.01□□□□□ -0.33
NUP54-213ENST00000513352 CCNOP22674 350 aa13.01□□□□□ -0.33
NUP54-213ENST00000513352 PTAFRP25105 342 aa13.01□□□□□ -0.33
NUP54-213ENST00000513352 CD40P25942 277 aa13.01□□□□□ -0.33
NUP54-213ENST00000513352 NR1H2P55055 460 aa13.01□□□□□ -0.33
NUP54-213ENST00000513352 TBC1D28Q2M2D7 210 aa13.01□□□□□ -0.33
NUP54-213ENST00000513352 SLC18B1Q6NT16 456 aa13.01□□□□□ -0.33
NUP54-213ENST00000513352 CFAP77Q6ZQR2 320 aa13.01□□□□□ -0.33
NUP54-213ENST00000513352 SPATC1Q76KD6 591 aa13.01□□□□□ -0.33
NUP54-213ENST00000513352 SLC16A9Q7RTY1 509 aa13.01□□□□□ -0.33
NUP54-213ENST00000513352 DPY19L4Q7Z388 723 aa13.01□□□□□ -0.33
NUP54-213ENST00000513352 DCXRQ7Z4W1 244 aa13.01□□□□□ -0.33
NUP54-213ENST00000513352 MYPOPQ86VE0 399 aaPredicted RBP13.01□□□□□ -0.33
NUP54-213ENST00000513352 TIGD4Q8IY51 512 aa13.01□□□□□ -0.33
NUP54-213ENST00000513352 SLC30A7Q8NEW0 376 aa13.01□□□□□ -0.33
NUP54-213ENST00000513352 SMAP2Q8WU79 429 aaPredicted RBP13.01□□□□□ -0.33
NUP54-213ENST00000513352 THEM6Q8WUY1 208 aa13.01□□□□□ -0.33
NUP54-213ENST00000513352 ZNF184Q99676 751 aaPredicted RBP13.01□□□□□ -0.33
NUP54-213ENST00000513352 WACQ9BTA9 647 aa13.01□□□□□ -0.33
NUP54-213ENST00000513352 MARCH7Q9H992 704 aa13.01□□□□□ -0.33
NUP54-213ENST00000513352 CDH20Q9HBT6 801 aa13.01□□□□□ -0.33
NUP54-213ENST00000513352 CRNNQ9UBG3 495 aaPredicted RBP13.01□□□□□ -0.33
NUP54-213ENST00000513352 CYB5R1Q9UHQ9 305 aa13.01□□□□□ -0.33
NUP54-213ENST00000513352 POU2F3Q9UKI9 436 aa13.01□□□□□ -0.33
NUP54-213ENST00000513352 AKAP8LQ9ULX6 646 aaKnown RBP eCLIP13.01□□□□□ -0.33
NUP54-213ENST00000513352 CADP27708 2225 aa13.01□□□□□ -0.33
NUP54-213ENST00000513352 DEFB108AA8MXU0 73 aa13□□□□□ -0.33
NUP54-213ENST00000513352 SIAH2O43255 324 aa13□□□□□ -0.33
NUP54-213ENST00000513352 IGLV1-44P01699 117 aa13□□□□□ -0.33
NUP54-213ENST00000513352 CRYAAP02489 173 aa13□□□□□ -0.33
NUP54-213ENST00000513352 CCL2P13500 99 aa13□□□□□ -0.33
NUP54-213ENST00000513352 ZNF14P17017 642 aaPredicted RBP13□□□□□ -0.33
NUP54-213ENST00000513352 GABRB1P18505 474 aa13□□□□□ -0.33
NUP54-213ENST00000513352 MTNR1AP48039 350 aa13□□□□□ -0.33
NUP54-213ENST00000513352 GDI2P50395 445 aaKnown RBP13□□□□□ -0.33
NUP54-213ENST00000513352 SPOCK1Q08629 439 aa13□□□□□ -0.33
NUP54-213ENST00000513352 POU4F2Q12837 409 aa13□□□□□ -0.33
NUP54-213ENST00000513352 GGTLC2Q14390 218 aa13□□□□□ -0.33
NUP54-213ENST00000513352 RAB35Q15286 201 aa13□□□□□ -0.33
NUP54-213ENST00000513352 TAF13Q15543 124 aa13□□□□□ -0.33
NUP54-213ENST00000513352 C3orf36Q3SXR2 165 aa13□□□□□ -0.33
NUP54-213ENST00000513352 CCDC92Q53HC0 331 aaPredicted RBP13□□□□□ -0.33
NUP54-213ENST00000513352 SLC25A30Q5SVS4 291 aa13□□□□□ -0.33
NUP54-213ENST00000513352 NCMAPQ5T1S8 102 aa13□□□□□ -0.33
NUP54-213ENST00000513352 ZNF787Q6DD87 383 aa13□□□□□ -0.33
NUP54-213ENST00000513352 ADAM5Q6NVV9 412 aa13□□□□□ -0.33
NUP54-213ENST00000513352 SLC22A25Q6T423 547 aa13□□□□□ -0.33
NUP54-213ENST00000513352 VASH1Q7L8A9 365 aaPredicted RBP13□□□□□ -0.33
NUP54-213ENST00000513352 THAP5Q7Z6K1 395 aa13□□□□□ -0.33
NUP54-213ENST00000513352 TMEM200AQ86VY9 491 aa13□□□□□ -0.33
NUP54-213ENST00000513352 SLC35F2Q8IXU6 374 aa13□□□□□ -0.33
NUP54-213ENST00000513352 FAM169BQ8N8A8 192 aa13□□□□□ -0.33
NUP54-213ENST00000513352 APH1BQ8WW43 257 aa13□□□□□ -0.33
NUP54-213ENST00000513352 MARVELD3Q96A59 401 aa13□□□□□ -0.33
NUP54-213ENST00000513352 RNFT2Q96EX2 444 aa13□□□□□ -0.33
NUP54-213ENST00000513352 CNBD2Q96M20 576 aa13□□□□□ -0.33
NUP54-213ENST00000513352 TBX5Q99593 518 aa13□□□□□ -0.33
NUP54-213ENST00000513352 TTTY10Q9BZA0 68 aa13□□□□□ -0.33
NUP54-213ENST00000513352 C1orf198Q9H425 327 aa13□□□□□ -0.33
NUP54-213ENST00000513352 CENPMQ9NSP4 180 aa13□□□□□ -0.33
NUP54-213ENST00000513352 LAMP5Q9UJQ1 280 aa13□□□□□ -0.33
NUP54-213ENST00000513352 HSPE1-MOB4S4R3N1 261 aa13□□□□□ -0.33
NUP54-213ENST00000513352 C5orf49A4QMS7 147 aa12.99□□□□□ -0.33
NUP54-213ENST00000513352 ATP6V1G2-DDX39BF2Z307 99 aa12.99□□□□□ -0.33
NUP54-213ENST00000513352 DBTP11182 482 aaKnown RBP12.99□□□□□ -0.33
NUP54-213ENST00000513352 STOMP27105 288 aa12.99□□□□□ -0.33
NUP54-213ENST00000513352 HCCSP53701 268 aa12.99□□□□□ -0.33
NUP54-213ENST00000513352 NAAAQ02083 359 aa12.99□□□□□ -0.33
NUP54-213ENST00000513352 ZNF91Q05481 1191 aa12.99□□□□□ -0.33
NUP54-213ENST00000513352 TMED1Q13445 227 aa12.99□□□□□ -0.33
NUP54-213ENST00000513352 DAZAP2Q15038 168 aaPredicted RBP12.99□□□□□ -0.33
NUP54-213ENST00000513352 SMN1Q16637 294 aaKnown RBP12.99□□□□□ -0.33
NUP54-213ENST00000513352 TEX30Q5JUR7 227 aa12.99□□□□□ -0.33
Retrieved 100 of 20,778 RNA–protein pairs in 82.2 ms