RNA–Protein interactions for RNA: ENST00000505804.1

TOPBP1-204, Transcript of DNA topoisomerase II binding protein 1, humanhuman

TSL 2

Gene TOPBP1, Length 472 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TOPBP1-204ENST00000505804 ACMSDQ8TDX5 336 aa2.22□□□□□ -2.05
TOPBP1-204ENST00000505804 ZNF721Q8TF20 911 aa2.22□□□□□ -2.05
TOPBP1-204ENST00000505804 RNF139Q8WU17 664 aa2.22□□□□□ -2.05
TOPBP1-204ENST00000505804 C15orf40Q8WUR7 153 aa2.22□□□□□ -2.05
TOPBP1-204ENST00000505804 RGP1Q92546 391 aaPredicted RBP2.22□□□□□ -2.05
TOPBP1-204ENST00000505804 ZNF2Q9BSG1 426 aaPredicted RBP2.22□□□□□ -2.05
TOPBP1-204ENST00000505804 RTBDNQ9BSG5 229 aaPredicted RBP2.22□□□□□ -2.05
TOPBP1-204ENST00000505804 ING2Q9H160 280 aa2.22□□□□□ -2.05
TOPBP1-204ENST00000505804 NEUROG2Q9H2A3 272 aa2.22□□□□□ -2.05
TOPBP1-204ENST00000505804 SPNS1Q9H2V7 528 aa2.22□□□□□ -2.05
TOPBP1-204ENST00000505804 ZDHHC4Q9NPG8 344 aa2.22□□□□□ -2.05
TOPBP1-204ENST00000505804 LGALS13Q9UHV8 139 aa2.22□□□□□ -2.05
TOPBP1-204ENST00000505804 SMCO3A2RU48 225 aa2.21□□□□□ -2.06
TOPBP1-204ENST00000505804 GOLGA8OA6NCC3 632 aa2.21□□□□□ -2.06
TOPBP1-204ENST00000505804 GOLGA8NF8WBI6 632 aa2.21□□□□□ -2.06
TOPBP1-204ENST00000505804 RNF13O43567 381 aa2.21□□□□□ -2.06
TOPBP1-204ENST00000505804 CIB2O75838 187 aa2.21□□□□□ -2.06
TOPBP1-204ENST00000505804 OR2J3O76001 311 aa2.21□□□□□ -2.06
TOPBP1-204ENST00000505804 YIF1AO95070 293 aa2.21□□□□□ -2.06
TOPBP1-204ENST00000505804 MPZL1O95297 269 aa2.21□□□□□ -2.06
TOPBP1-204ENST00000505804 CD5P06127 495 aa2.21□□□□□ -2.06
TOPBP1-204ENST00000505804 TROVE2P10155 538 aaKnown RBP eCLIP2.21□□□□□ -2.06
TOPBP1-204ENST00000505804 WARSP23381 471 aaKnown RBP2.21□□□□□ -2.06
TOPBP1-204ENST00000505804 DCKP27707 260 aa2.21□□□□□ -2.06
TOPBP1-204ENST00000505804 CSNK1EP49674 416 aaKnown RBP2.21□□□□□ -2.06
TOPBP1-204ENST00000505804 VSX2P58304 361 aaPredicted RBP2.21□□□□□ -2.06
TOPBP1-204ENST00000505804 UBE2NP61088 152 aaKnown RBP2.21□□□□□ -2.06
TOPBP1-204ENST00000505804 IRF4Q15306 451 aa2.21□□□□□ -2.06
TOPBP1-204ENST00000505804 SF3A2Q15428 464 aaKnown RBP2.21□□□□□ -2.06
TOPBP1-204ENST00000505804 OR7A5Q15622 319 aa2.21□□□□□ -2.06
TOPBP1-204ENST00000505804 SAXO2Q658L1 398 aa2.21□□□□□ -2.06
TOPBP1-204ENST00000505804 SLC25A34Q6PIV7 304 aa2.21□□□□□ -2.06
TOPBP1-204ENST00000505804 CDH26Q8IXH8 852 aa2.21□□□□□ -2.06
TOPBP1-204ENST00000505804 METTL13Q8N6R0 699 aa2.21□□□□□ -2.06
TOPBP1-204ENST00000505804 OR2A1Q8NGT9 310 aa2.21□□□□□ -2.06
TOPBP1-204ENST00000505804 PIFOQ8TCI5 191 aa2.21□□□□□ -2.06
TOPBP1-204ENST00000505804 ELMO1Q92556 727 aa2.21□□□□□ -2.06
TOPBP1-204ENST00000505804 MRGPRFQ96AM1 343 aa2.21□□□□□ -2.06
TOPBP1-204ENST00000505804 RASD2Q96D21 266 aa2.21□□□□□ -2.06
TOPBP1-204ENST00000505804 SEH1LQ96EE3 360 aa2.21□□□□□ -2.06
TOPBP1-204ENST00000505804 NARS2Q96I59 477 aaKnown RBP2.21□□□□□ -2.06
TOPBP1-204ENST00000505804 DNAJC1Q96KC8 554 aaKnown RBP2.21□□□□□ -2.06
TOPBP1-204ENST00000505804 TIMM17AQ99595 171 aa2.21□□□□□ -2.06
TOPBP1-204ENST00000505804 CTRCQ99895 268 aa2.21□□□□□ -2.06
TOPBP1-204ENST00000505804 NUP58Q9BVL2 599 aa2.21□□□□□ -2.06
TOPBP1-204ENST00000505804 ANKRA2Q9H9E1 313 aa2.21□□□□□ -2.06
TOPBP1-204ENST00000505804 DDX19AQ9NUU7 478 aaKnown RBP2.21□□□□□ -2.06
TOPBP1-204ENST00000505804 HRASLS2Q9NWW9 162 aa2.21□□□□□ -2.06
TOPBP1-204ENST00000505804 IKBKGQ9Y6K9 419 aa2.21□□□□□ -2.06
TOPBP1-204ENST00000505804 PTPRTO14522 1441 aa2.2□□□□□ -2.06
TOPBP1-204ENST00000505804 TRAV40A0A0B4J280 105 aa2.2□□□□□ -2.06
TOPBP1-204ENST00000505804 A0A0U1RQV1 116 aa2.2□□□□□ -2.06
TOPBP1-204ENST00000505804 L7N2F9 121 aa2.2□□□□□ -2.06
TOPBP1-204ENST00000505804 UBXN8O00124 270 aa2.2□□□□□ -2.06
TOPBP1-204ENST00000505804 LSM1O15116 133 aaKnown RBP2.2□□□□□ -2.06
TOPBP1-204ENST00000505804 CCNKO75909 580 aa2.2□□□□□ -2.06
TOPBP1-204ENST00000505804 RCBTB2O95199 551 aa2.2□□□□□ -2.06
TOPBP1-204ENST00000505804 APCSP02743 223 aa2.2□□□□□ -2.06
TOPBP1-204ENST00000505804 EIF4EP06730 217 aaKnown RBP2.2□□□□□ -2.06
TOPBP1-204ENST00000505804 CD3GP09693 182 aa2.2□□□□□ -2.06
TOPBP1-204ENST00000505804 DTYMKP23919 212 aa2.2□□□□□ -2.06
TOPBP1-204ENST00000505804 SSTR5P35346 364 aa2.2□□□□□ -2.06
TOPBP1-204ENST00000505804 KIR3DL2P43630 455 aa2.2□□□□□ -2.06
TOPBP1-204ENST00000505804 TNNT2P45379 298 aaPredicted RBP2.2□□□□□ -2.06
TOPBP1-204ENST00000505804 SLC11A1P49279 550 aa2.2□□□□□ -2.06
TOPBP1-204ENST00000505804 STXBP1P61764 594 aaKnown RBP2.2□□□□□ -2.06
TOPBP1-204ENST00000505804 CHRNA6Q15825 494 aa2.2□□□□□ -2.06
TOPBP1-204ENST00000505804 ZNF726P1Q15940 193 aa2.2□□□□□ -2.06
TOPBP1-204ENST00000505804 PRAMEF20Q5VT98 475 aa2.2□□□□□ -2.06
TOPBP1-204ENST00000505804 C9orf135Q5VTT2 229 aa2.2□□□□□ -2.06
TOPBP1-204ENST00000505804 REEP3Q6NUK4 255 aa2.2□□□□□ -2.06
TOPBP1-204ENST00000505804 TMEM150AQ86TG1 271 aa2.2□□□□□ -2.06
TOPBP1-204ENST00000505804 CALHM1Q8IU99 346 aa2.2□□□□□ -2.06
TOPBP1-204ENST00000505804 CMTM1Q8IZ96 169 aa2.2□□□□□ -2.06
TOPBP1-204ENST00000505804 ARRDC1Q8N5I2 433 aa2.2□□□□□ -2.06
TOPBP1-204ENST00000505804 NECAP1Q8NC96 275 aa2.2□□□□□ -2.06
TOPBP1-204ENST00000505804 OR4K5Q8NGD3 323 aa2.2□□□□□ -2.06
TOPBP1-204ENST00000505804 RAB3IL1Q8TBN0 382 aa2.2□□□□□ -2.06
TOPBP1-204ENST00000505804 NTAN1Q96AB6 310 aa2.2□□□□□ -2.06
TOPBP1-204ENST00000505804 EEF1AKMT3Q96AZ1 226 aa2.2□□□□□ -2.06
TOPBP1-204ENST00000505804 FLYWCH2Q96CP2 140 aaKnown RBP2.2□□□□□ -2.06
TOPBP1-204ENST00000505804 RMI2Q96E14 147 aa2.2□□□□□ -2.06
TOPBP1-204ENST00000505804 GALNT14Q96FL9 552 aa2.2□□□□□ -2.06
TOPBP1-204ENST00000505804 FOXC2Q99958 501 aa2.2□□□□□ -2.06
TOPBP1-204ENST00000505804 EDA2RQ9HAV5 297 aa2.2□□□□□ -2.06
TOPBP1-204ENST00000505804 TRMT112Q9UI30 125 aaKnown RBP2.2□□□□□ -2.06
TOPBP1-204ENST00000505804 PITPNC1Q9UKF7 332 aa2.2□□□□□ -2.06
TOPBP1-204ENST00000505804 TSSC4Q9Y5U2 329 aaPredicted RBP2.2□□□□□ -2.06
TOPBP1-204ENST00000505804 KCNE3Q9Y6H6 103 aa2.2□□□□□ -2.06
TOPBP1-204ENST00000505804 COL1A2P08123 1366 aa2.2□□□□□ -2.06
TOPBP1-204ENST00000505804 RPL36A-HNRNPH2H7BZ11 118 aa2.19□□□□□ -2.06
TOPBP1-204ENST00000505804 FKBP6O75344 327 aa2.19□□□□□ -2.06
TOPBP1-204ENST00000505804 RDH16O75452 317 aa2.19□□□□□ -2.06
TOPBP1-204ENST00000505804 HLA-DQA1P01909 254 aa2.19□□□□□ -2.06
TOPBP1-204ENST00000505804 PABPC4LP0CB38 370 aaKnown RBP2.19□□□□□ -2.06
TOPBP1-204ENST00000505804 ZNF14P17017 642 aaPredicted RBP2.19□□□□□ -2.06
TOPBP1-204ENST00000505804 GGT1P19440 569 aa2.19□□□□□ -2.06
TOPBP1-204ENST00000505804 SLC1A1P43005 524 aa2.19□□□□□ -2.06
TOPBP1-204ENST00000505804 CHRFAM7AQ494W8 412 aa2.19□□□□□ -2.06
TOPBP1-204ENST00000505804 ZYG11AQ6WRX3 759 aa2.19□□□□□ -2.06
Retrieved 100 of 20,778 RNA–protein pairs in 25.6 ms