RNA–Protein interactions for RNA: ENST00000495039.1

VPS50-219, Transcript of VPS50, EARP/GARPII complex subunit, humanhuman

TSL 1 (best)

Gene VPS50, Length 1,115 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS50-219ENST00000495039 KIFAP3Q92845 792 aa1.88□□□□□ -2.11
VPS50-219ENST00000495039 NTAN1Q96AB6 310 aa1.88□□□□□ -2.11
VPS50-219ENST00000495039 SEH1LQ96EE3 360 aa1.88□□□□□ -2.11
VPS50-219ENST00000495039 NARS2Q96I59 477 aaKnown RBP1.88□□□□□ -2.11
VPS50-219ENST00000495039 DNAJC1Q96KC8 554 aaKnown RBP1.88□□□□□ -2.11
VPS50-219ENST00000495039 ZNF2Q9BSG1 426 aaPredicted RBP1.88□□□□□ -2.11
VPS50-219ENST00000495039 TRMT112Q9UI30 125 aaKnown RBP1.88□□□□□ -2.11
VPS50-219ENST00000495039 TUBGCP6Q96RT7 1819 aa1.88□□□□□ -2.11
VPS50-219ENST00000495039 ADAMTS13Q76LX8 1427 aa1.88□□□□□ -2.11
VPS50-219ENST00000495039 AKNAQ7Z591 1439 aa1.88□□□□□ -2.11
VPS50-219ENST00000495039 CABIN1Q9Y6J0 2220 aa1.87□□□□□ -2.11
VPS50-219ENST00000495039 BRWD3Q6RI45 1802 aa1.87□□□□□ -2.11
VPS50-219ENST00000495039 OR6C74A6NCV1 312 aa1.87□□□□□ -2.11
VPS50-219ENST00000495039 PTPRTO14522 1441 aa1.87□□□□□ -2.11
VPS50-219ENST00000495039 NUPL2O15504 423 aaKnown RBP1.87□□□□□ -2.11
VPS50-219ENST00000495039 CLOCKO15516 846 aa1.87□□□□□ -2.11
VPS50-219ENST00000495039 KLHL41O60662 606 aa1.87□□□□□ -2.11
VPS50-219ENST00000495039 CIB2O75838 187 aa1.87□□□□□ -2.11
VPS50-219ENST00000495039 YIF1AO95070 293 aa1.87□□□□□ -2.11
VPS50-219ENST00000495039 MPZL1O95297 269 aa1.87□□□□□ -2.11
VPS50-219ENST00000495039 TSPAN13O95857 204 aa1.87□□□□□ -2.11
VPS50-219ENST00000495039 GPX4P36969 197 aaPredicted RBP1.87□□□□□ -2.11
VPS50-219ENST00000495039 CDH17Q12864 832 aa1.87□□□□□ -2.11
VPS50-219ENST00000495039 PCM1Q15154 2024 aa1.87□□□□□ -2.11
VPS50-219ENST00000495039 OR7A5Q15622 319 aa1.87□□□□□ -2.11
VPS50-219ENST00000495039 SMUG1Q53HV7 270 aa1.87□□□□□ -2.11
VPS50-219ENST00000495039 PPM1LQ5SGD2 360 aa1.87□□□□□ -2.11
VPS50-219ENST00000495039 Q6ZSR3 168 aa1.87□□□□□ -2.11
VPS50-219ENST00000495039 TMEM150AQ86TG1 271 aa1.87□□□□□ -2.11
VPS50-219ENST00000495039 PRELID2Q8N945 189 aa1.87□□□□□ -2.11
VPS50-219ENST00000495039 OR7G2Q8NG99 324 aa1.87□□□□□ -2.11
VPS50-219ENST00000495039 OR2A1Q8NGT9 310 aa1.87□□□□□ -2.11
VPS50-219ENST00000495039 PIFOQ8TCI5 191 aa1.87□□□□□ -2.11
VPS50-219ENST00000495039 RNF139Q8WU17 664 aa1.87□□□□□ -2.11
VPS50-219ENST00000495039 OR5B12Q96R08 314 aa1.87□□□□□ -2.11
VPS50-219ENST00000495039 CAMK2N2Q96S95 79 aa1.87□□□□□ -2.11
VPS50-219ENST00000495039 TIMM17AQ99595 171 aa1.87□□□□□ -2.11
VPS50-219ENST00000495039 RACGAP1Q9H0H5 632 aa1.87□□□□□ -2.11
VPS50-219ENST00000495039 ING2Q9H160 280 aa1.87□□□□□ -2.11
VPS50-219ENST00000495039 SPNS1Q9H2V7 528 aa1.87□□□□□ -2.11
VPS50-219ENST00000495039 OR51M1Q9H341 326 aa1.87□□□□□ -2.11
VPS50-219ENST00000495039 LGALS13Q9UHV8 139 aa1.87□□□□□ -2.11
VPS50-219ENST00000495039 HYOU1Q9Y4L1 999 aa1.87□□□□□ -2.11
VPS50-219ENST00000495039 KCNE3Q9Y6H6 103 aa1.87□□□□□ -2.11
VPS50-219ENST00000495039 IKBKGQ9Y6K9 419 aa1.87□□□□□ -2.11
VPS50-219ENST00000495039 NUP214P35658 2090 aaPredicted RBP1.87□□□□□ -2.11
VPS50-219ENST00000495039 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP1.86□□□□□ -2.11
VPS50-219ENST00000495039 DOCK9Q9BZ29 2069 aa1.86□□□□□ -2.11
VPS50-219ENST00000495039 KIR2DS1A0A191URI9 304 aa1.86□□□□□ -2.11
VPS50-219ENST00000495039 XKRY2A2RUG3 117 aa1.86□□□□□ -2.11
VPS50-219ENST00000495039 FAM47DPA6NHR8 397 aa1.86□□□□□ -2.11
VPS50-219ENST00000495039 RRP8O43159 456 aaKnown RBP1.86□□□□□ -2.11
VPS50-219ENST00000495039 ZNF207O43670 478 aaKnown RBP1.86□□□□□ -2.11
VPS50-219ENST00000495039 WBP4O75554 376 aaKnown RBP1.86□□□□□ -2.11
VPS50-219ENST00000495039 GCM2O75603 506 aaPredicted RBP1.86□□□□□ -2.11
VPS50-219ENST00000495039 APCSP02743 223 aa1.86□□□□□ -2.11
VPS50-219ENST00000495039 ACSM4P0C7M7 580 aa1.86□□□□□ -2.11
VPS50-219ENST00000495039 POLR2MP0CAP2 368 aa1.86□□□□□ -2.11
VPS50-219ENST00000495039 PABPC4LP0CB38 370 aaKnown RBP1.86□□□□□ -2.11
VPS50-219ENST00000495039 C1GALT1C1LP0DN25 315 aa1.86□□□□□ -2.11
VPS50-219ENST00000495039 DCKP27707 260 aa1.86□□□□□ -2.11
VPS50-219ENST00000495039 SSTR5P35346 364 aa1.86□□□□□ -2.11
VPS50-219ENST00000495039 CSNK1EP49674 416 aaKnown RBP1.86□□□□□ -2.11
VPS50-219ENST00000495039 RND2P52198 227 aa1.86□□□□□ -2.11
VPS50-219ENST00000495039 KRTAP12-3P60328 96 aa1.86□□□□□ -2.11
VPS50-219ENST00000495039 STXBP1P61764 594 aaKnown RBP1.86□□□□□ -2.11
VPS50-219ENST00000495039 KIR2DS1Q14954 304 aa1.86□□□□□ -2.11
VPS50-219ENST00000495039 QPRTQ15274 297 aa1.86□□□□□ -2.11
VPS50-219ENST00000495039 PRSS8Q16651 343 aa1.86□□□□□ -2.11
VPS50-219ENST00000495039 XKR7Q5GH72 579 aa1.86□□□□□ -2.11
VPS50-219ENST00000495039 C9orf135Q5VTT2 229 aa1.86□□□□□ -2.11
VPS50-219ENST00000495039 LRP11Q86VZ4 500 aa1.86□□□□□ -2.11
VPS50-219ENST00000495039 ZNF547Q8IVP9 402 aa1.86□□□□□ -2.11
VPS50-219ENST00000495039 ZFP41Q8N8Y5 198 aa1.86□□□□□ -2.11
VPS50-219ENST00000495039 OR8U1Q8NH10 309 aa1.86□□□□□ -2.11
VPS50-219ENST00000495039 MRGPRFQ96AM1 343 aa1.86□□□□□ -2.11
VPS50-219ENST00000495039 FLYWCH2Q96CP2 140 aaKnown RBP1.86□□□□□ -2.11
VPS50-219ENST00000495039 RASD2Q96D21 266 aa1.86□□□□□ -2.11
VPS50-219ENST00000495039 RMI2Q96E14 147 aa1.86□□□□□ -2.11
VPS50-219ENST00000495039 L3HYPDHQ96EM0 354 aa1.86□□□□□ -2.11
VPS50-219ENST00000495039 GALNT14Q96FL9 552 aa1.86□□□□□ -2.11
VPS50-219ENST00000495039 DUS3LQ96G46 650 aaKnown RBP1.86□□□□□ -2.11
VPS50-219ENST00000495039 PLIN2Q99541 437 aa1.86□□□□□ -2.11
VPS50-219ENST00000495039 DOK1Q99704 481 aa1.86□□□□□ -2.11
VPS50-219ENST00000495039 TMEM9BQ9NQ34 198 aa1.86□□□□□ -2.11
VPS50-219ENST00000495039 HRASLS2Q9NWW9 162 aa1.86□□□□□ -2.11
VPS50-219ENST00000495039 FCGBPQ9Y6R7 5405 aaPredicted RBP1.86□□□□□ -2.11
VPS50-219ENST00000495039 TNS2Q63HR2 1409 aa1.85□□□□□ -2.11
VPS50-219ENST00000495039 IGLV3-12A0A075B6K2 115 aa1.85□□□□□ -2.11
VPS50-219ENST00000495039 A0A0U1RQV1 116 aa1.85□□□□□ -2.11
VPS50-219ENST00000495039 GOLGA8OA6NCC3 632 aa1.85□□□□□ -2.11
VPS50-219ENST00000495039 LYRM9A8MSI8 78 aa1.85□□□□□ -2.11
VPS50-219ENST00000495039 GOLGA8NF8WBI6 632 aa1.85□□□□□ -2.11
VPS50-219ENST00000495039 BPY2O14599 106 aa1.85□□□□□ -2.11
VPS50-219ENST00000495039 RNF13O43567 381 aa1.85□□□□□ -2.11
VPS50-219ENST00000495039 RDH16O75452 317 aa1.85□□□□□ -2.11
VPS50-219ENST00000495039 OR2J3O76001 311 aa1.85□□□□□ -2.11
VPS50-219ENST00000495039 SNX4O95219 450 aa1.85□□□□□ -2.11
VPS50-219ENST00000495039 HLA-DQA1P01909 254 aa1.85□□□□□ -2.11
VPS50-219ENST00000495039 CD3GP09693 182 aa1.85□□□□□ -2.11
Retrieved 100 of 20,778 RNA–protein pairs in 32.2 ms