RNA–Protein interactions for RNA: ENST00000494566.5

CCDC88B-210, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 2

Gene CCDC88B, Length 2,909 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-210ENST00000494566 RGS7BPQ6MZT1 257 aaPredicted RBP14.83□□□□□ -0.03
CCDC88B-210ENST00000494566 RHOUQ7L0Q8 258 aa14.83□□□□□ -0.03
CCDC88B-210ENST00000494566 ZNF227Q86WZ6 799 aa14.83□□□□□ -0.03
CCDC88B-210ENST00000494566 SDR16C5Q8N3Y7 309 aa14.83□□□□□ -0.03
CCDC88B-210ENST00000494566 JAGN1Q8N5M9 183 aa14.83□□□□□ -0.03
CCDC88B-210ENST00000494566 ACBD4Q8NC06 268 aa14.83□□□□□ -0.03
CCDC88B-210ENST00000494566 CASTOR1Q8WTX7 329 aa14.83□□□□□ -0.03
CCDC88B-210ENST00000494566 ZNF501Q96CX3 271 aaPredicted RBP14.83□□□□□ -0.03
CCDC88B-210ENST00000494566 C7orf50Q9BRJ6 194 aaKnown RBP14.83□□□□□ -0.03
CCDC88B-210ENST00000494566 MRPL22Q9NWU5 206 aaKnown RBP14.83□□□□□ -0.03
CCDC88B-210ENST00000494566 AKAP7Q9P0M2 348 aaPredicted RBP14.83□□□□□ -0.03
CCDC88B-210ENST00000494566 B9D1Q9UPM9 204 aa14.83□□□□□ -0.03
CCDC88B-210ENST00000494566 MFSD2BA6NFX1 497 aa14.83□□□□□ -0.04
CCDC88B-210ENST00000494566 OR6A2O95222 327 aa14.83□□□□□ -0.04
CCDC88B-210ENST00000494566 MFGE8Q08431 387 aaPredicted RBP14.83□□□□□ -0.04
CCDC88B-210ENST00000494566 MOGAT2Q3SYC2 334 aa14.83□□□□□ -0.04
CCDC88B-210ENST00000494566 C1orf140Q5VVS0 124 aa14.83□□□□□ -0.04
CCDC88B-210ENST00000494566 CMKLR1Q99788 373 aa14.83□□□□□ -0.04
CCDC88B-210ENST00000494566 PDCD10Q9BUL8 212 aa14.83□□□□□ -0.04
CCDC88B-210ENST00000494566 PRR13Q9NZ81 148 aa14.83□□□□□ -0.04
CCDC88B-210ENST00000494566 OR2M5A3KFT3 312 aa14.82□□□□□ -0.04
CCDC88B-210ENST00000494566 CPED1A4D0V7 1026 aa14.82□□□□□ -0.04
CCDC88B-210ENST00000494566 CTAG2O75638 210 aa14.82□□□□□ -0.04
CCDC88B-210ENST00000494566 AMY2AP04746 511 aa14.82□□□□□ -0.04
CCDC88B-210ENST00000494566 GIPP09681 153 aaPredicted RBP14.82□□□□□ -0.04
CCDC88B-210ENST00000494566 SLC6A8P48029 635 aa14.82□□□□□ -0.04
CCDC88B-210ENST00000494566 RAP2BP61225 183 aa14.82□□□□□ -0.04
CCDC88B-210ENST00000494566 ADAM8P78325 824 aa14.82□□□□□ -0.04
CCDC88B-210ENST00000494566 TMEM88Q6PEY1 159 aa14.82□□□□□ -0.04
CCDC88B-210ENST00000494566 MAMDC2Q7Z304 686 aaPredicted RBP14.82□□□□□ -0.04
CCDC88B-210ENST00000494566 SLC51BQ86UW2 128 aa14.82□□□□□ -0.04
CCDC88B-210ENST00000494566 LINC00346Q8IVM7 164 aa14.82□□□□□ -0.04
CCDC88B-210ENST00000494566 CADM4Q8NFZ8 388 aa14.82□□□□□ -0.04
CCDC88B-210ENST00000494566 OR1J2Q8NGS2 313 aa14.82□□□□□ -0.04
CCDC88B-210ENST00000494566 OTOSQ8NHW6 89 aa14.82□□□□□ -0.04
CCDC88B-210ENST00000494566 STT3BQ8TCJ2 826 aa14.82□□□□□ -0.04
CCDC88B-210ENST00000494566 ARPC5LQ9BPX5 153 aa14.82□□□□□ -0.04
CCDC88B-210ENST00000494566 WDR13Q9H1Z4 485 aa14.82□□□□□ -0.04
CCDC88B-210ENST00000494566 LOC101059948A0A1B0GTJ6 334 aa14.82□□□□□ -0.04
CCDC88B-210ENST00000494566 PRSS37A4D1T9 235 aa14.82□□□□□ -0.04
CCDC88B-210ENST00000494566 GGT3PA6NGU5 568 aa14.82□□□□□ -0.04
CCDC88B-210ENST00000494566 BCAT2O15382 392 aaPredicted RBP14.82□□□□□ -0.04
CCDC88B-210ENST00000494566 NUDT21O43809 227 aaKnown RBP14.82□□□□□ -0.04
CCDC88B-210ENST00000494566 CD1AP06126 327 aa14.82□□□□□ -0.04
CCDC88B-210ENST00000494566 CORO6Q6QEF8 472 aa14.82□□□□□ -0.04
CCDC88B-210ENST00000494566 UNQ6126/PRO20091Q6UXV3 157 aa14.82□□□□□ -0.04
CCDC88B-210ENST00000494566 COX15Q7KZN9 410 aa14.82□□□□□ -0.04
CCDC88B-210ENST00000494566 SPACA5Q96QH8 159 aa14.82□□□□□ -0.04
CCDC88B-210ENST00000494566 MED11Q9P086 117 aa14.82□□□□□ -0.04
CCDC88B-210ENST00000494566 STEAP1Q9UHE8 339 aa14.82□□□□□ -0.04
CCDC88B-210ENST00000494566 SESN1Q9Y6P5 492 aa14.82□□□□□ -0.04
CCDC88B-210ENST00000494566 TMEM235A6NFC5 223 aa14.82□□□□□ -0.04
CCDC88B-210ENST00000494566 FAM74A7A6NL05 159 aa14.82□□□□□ -0.04
CCDC88B-210ENST00000494566 CTDSPLO15194 276 aa14.82□□□□□ -0.04
CCDC88B-210ENST00000494566 RPL27P61353 136 aaKnown RBP14.82□□□□□ -0.04
CCDC88B-210ENST00000494566 GK2Q14410 553 aaPredicted RBP14.82□□□□□ -0.04
CCDC88B-210ENST00000494566 FAM74A3Q4VXF1 159 aa14.82□□□□□ -0.04
CCDC88B-210ENST00000494566 GLYATL3Q5SZD4 288 aa14.82□□□□□ -0.04
CCDC88B-210ENST00000494566 C8orf44Q96CB5 159 aa14.82□□□□□ -0.04
CCDC88B-210ENST00000494566 RAB33BQ9H082 229 aa14.82□□□□□ -0.04
CCDC88B-210ENST00000494566 COMMD4Q9H0A8 199 aa14.82□□□□□ -0.04
CCDC88B-210ENST00000494566 COA3Q9Y2R0 106 aaPredicted RBP14.82□□□□□ -0.04
CCDC88B-210ENST00000494566 RALGAPA1Q6GYQ0 2036 aa14.82□□□□□ -0.04
CCDC88B-210ENST00000494566 SDK2Q58EX2 2172 aa14.81□□□□□ -0.04
CCDC88B-210ENST00000494566 TRBV5-5A0A0J9YX44 114 aa14.81□□□□□ -0.04
CCDC88B-210ENST00000494566 H3BML4 177 aa14.81□□□□□ -0.04
CCDC88B-210ENST00000494566 GDF9O60383 454 aa14.81□□□□□ -0.04
CCDC88B-210ENST00000494566 FADS1O60427 444 aa14.81□□□□□ -0.04
CCDC88B-210ENST00000494566 PRAF2O60831 178 aa14.81□□□□□ -0.04
CCDC88B-210ENST00000494566 GABRA1P14867 456 aa14.81□□□□□ -0.04
CCDC88B-210ENST00000494566 GLB1P16278 677 aa14.81□□□□□ -0.04
CCDC88B-210ENST00000494566 MNDAP41218 407 aa14.81□□□□□ -0.04
CCDC88B-210ENST00000494566 LUMP51884 338 aaPredicted RBP14.81□□□□□ -0.04
CCDC88B-210ENST00000494566 EPHA4P54764 986 aa14.81□□□□□ -0.04
CCDC88B-210ENST00000494566 DLX5P56178 289 aa14.81□□□□□ -0.04
CCDC88B-210ENST00000494566 RBMS2Q15434 407 aaKnown RBP14.81□□□□□ -0.04
CCDC88B-210ENST00000494566 ZNF660Q6AZW8 331 aaPredicted RBP14.81□□□□□ -0.04
CCDC88B-210ENST00000494566 OR52W1Q6IF63 320 aa14.81□□□□□ -0.04
CCDC88B-210ENST00000494566 MVB12AQ96EY5 273 aa14.81□□□□□ -0.04
CCDC88B-210ENST00000494566 C4orf45Q96LM5 186 aa14.81□□□□□ -0.04
CCDC88B-210ENST00000494566 CCNL2Q96S94 520 aaPredicted RBP14.81□□□□□ -0.04
CCDC88B-210ENST00000494566 TAS2R4Q9NYW5 299 aa14.81□□□□□ -0.04
CCDC88B-210ENST00000494566 RNF4P78317 190 aa14.81□□□□□ -0.04
CCDC88B-210ENST00000494566 INPP5JQ15735 1006 aaPredicted RBP14.81□□□□□ -0.04
CCDC88B-210ENST00000494566 LRFN4Q6PJG9 635 aa14.81□□□□□ -0.04
CCDC88B-210ENST00000494566 ZNF574Q6ZN55 896 aaPredicted RBP14.81□□□□□ -0.04
CCDC88B-210ENST00000494566 KCTD9Q7L273 389 aa14.81□□□□□ -0.04
CCDC88B-210ENST00000494566 GVQW1Q8N7I0 195 aa14.81□□□□□ -0.04
CCDC88B-210ENST00000494566 OR1S1Q8NH92 325 aa14.81□□□□□ -0.04
CCDC88B-210ENST00000494566 FAM3DQ96BQ1 224 aa14.81□□□□□ -0.04
CCDC88B-210ENST00000494566 SLC41A2Q96JW4 573 aa14.81□□□□□ -0.04
CCDC88B-210ENST00000494566 MED29Q9NX70 200 aa14.81□□□□□ -0.04
CCDC88B-210ENST00000494566 PTTG3PQ9NZH4 202 aa14.81□□□□□ -0.04
CCDC88B-210ENST00000494566 POLR2HP52434 150 aaKnown RBP14.8□□□□□ -0.04
CCDC88B-210ENST00000494566 RAG2P55895 527 aa14.8□□□□□ -0.04
CCDC88B-210ENST00000494566 OR7A5Q15622 319 aa14.8□□□□□ -0.04
CCDC88B-210ENST00000494566 SGCBQ16585 318 aa14.8□□□□□ -0.04
CCDC88B-210ENST00000494566 EMC4Q5J8M3 183 aa14.8□□□□□ -0.04
CCDC88B-210ENST00000494566 ASPHD2Q6ICH7 369 aa14.8□□□□□ -0.04
CCDC88B-210ENST00000494566 STEAP1BQ6NZ63 245 aa14.8□□□□□ -0.04
Retrieved 100 of 20,778 RNA–protein pairs in 29.9 ms